Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/final_image/HTT_fold_4.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 156.11 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 156.11 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 156.11 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 169.65 MB
Based on canonical annotations, the following gene is in your area of interest: HTT(+)
write fasta - Elapsed time since the previous call: 0.66 seconds
write fasta - Current memory usage: 169.65 MB
Length of region: 120 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.18 seconds
write dat - Current memory usage: 172.56 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/fasta/HTT.fasta" "/disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/ct/HTT.ct" --SHAPE "HTT.dat"

fold - Elapsed time since the previous call: 0.18 seconds
fold - Current memory usage: 172.56 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/ct/HTT.ct" "/disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/fold_FE/HTT.txt" -sh "HTT.dat"

efn2 - Elapsed time since the previous call: 0.49 seconds
efn2 - Current memory usage: 172.56 MB
This region has 6 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/ct/HTT.ct" 1 "/disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/fold_dbn/HTT_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 172.56 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/ct/HTT.ct" 2 "/disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/fold_dbn/HTT_temp2.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 172.56 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/ct/HTT.ct" 3 "/disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/fold_dbn/HTT_temp3.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 172.56 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/ct/HTT.ct" 4 "/disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/fold_dbn/HTT_temp4.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 172.56 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/ct/HTT.ct" 5 "/disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/fold_dbn/HTT_temp5.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 172.56 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/ct/HTT.ct" 6 "/disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/fold_dbn/HTT_temp6.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 172.56 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGGGGGCAUUGGGCAGCUCACCGCUGCUAAGGAGGAGUCUGGUGGCCGAAGCCGUAGUGGGAGUAUUGUGGAACUUAUAGCUGGAGGGGGUUCCUCAUGCAGCCCUGUCCUUUCAAGAAA', '-structureDBN', '.(((((((..((((.((((.(((((((...((....(((....))).....)))))))))))))...(((.....))).((..(((((...)))))..)).)))))))))))........', '-o', '/disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/final_image/HTT_fold_4.svg', '-title', 'HTT, -43.3 ± 1.6\n kcal/mol, AUC: 0.596', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,5,6,9,10,11,12,13,16,18,23,25,26,28,31,32,34,35,37,38,40,41,42,43,44,45,48,51,54,55,57,58,59,60,61,63,64,66,67,68,69,70,71,75,76,78,80,82,83,84,86,87,88,89,90,91,92,95,98,99,102,106,107,108,111,112,113,117', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,72,73,77,14,15,17,81,85,24,27,93,33,39,103,105,109', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '96,97,36,101,104,74,79,114,52,53,118,119,56,94', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '65,7,8,19,20,21,22,29,30,100,46,47,110,49,50,115,116,120,62']
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Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/final_image/HTT_fold_3.svg


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Text: 'HTT, -43.3 ± 1.6
 kcal/mol, AUC: 0.596', X: 108.63061626155215, Y: 641.3920867289119, Width: 142.5, Height: 23
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Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/final_image/HTT_fold_final_4.svg
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Text: 'G', X: 190.38537383642552, Y: 181.48777323312413, Width: 10.5, Height: 8
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Text: 'G', X: 200.4096310031548, Y: 198.79425376081304, Width: 10.5, Height: 8
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Text: 'C', X: 220.02231272444436, Y: 448.38591693964474, Width: 10.5, Height: 8
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Text: 'C', X: 220.02231272444436, Y: 468.38591693964474, Width: 10.5, Height: 8
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Text: 'U', X: 220.02231272444436, Y: 488.38591693964474, Width: 10.5, Height: 8
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Text: 'U', X: 220.02231272444436, Y: 508.38591693964474, Width: 10.5, Height: 8
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Text: 'U', X: 237.52231272444436, Y: 508.38591693964474, Width: 10.5, Height: 8
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Text: 'C', X: 255.02231272444436, Y: 508.38591693964474, Width: 10.5, Height: 8
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Text: 'A', X: 272.52231272444436, Y: 508.38591693964474, Width: 10.5, Height: 8
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Text: 'A', X: 290.02231272444436, Y: 508.38591693964474, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 307.52231272444436, Y: 508.38591693964474, Width: 10.5, Height: 8
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Text: 'A', X: 325.02231272444436, Y: 508.38591693964474, Width: 10.5, Height: 8
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Text: 'A', X: 342.52231272444436, Y: 508.38591693964474, Width: 10.5, Height: 8
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Text: 'A', X: 360.02231272444436, Y: 508.38591693964474, Width: 10.5, Height: 8
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Text: '1', X: 170.77231272444436, Y: 528.3859169396447, Width: 9.0, Height: 8
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Text: '10', X: 169.6441388827364, Y: 341.8786789598059, Width: 18.0, Height: 8
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Text: '20', X: 159.0906370541019, Y: 245.3315258226043, Width: 18.0, Height: 8
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Text: '30', X: 47.25471102404566, Y: 94.54460581355852, Width: 18.0, Height: 8
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Text: '40', X: 76.86975867211065, Y: 19.901458282135422, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/final_image/HTT_fold_1.svg


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Text: '60', X: 204.19665288458043, Y: 180.268776677647, Width: 18.0, Height: 8
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Text: '70', X: 350.22232079399504, Y: 216.83708916428816, Width: 18.0, Height: 8
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Text: '80', X: 346.10367250461496, Y: 311.04363136952554, Width: 18.0, Height: 8
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Text: '90', X: 422.21368411227945, Y: 481.14615225470214, Width: 18.0, Height: 8
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Text: '100', X: 285.1178051198811, Y: 350.2036983566354, Width: 27.0, Height: 8
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Text: '110', X: 231.77231272444436, Y: 468.38591693964474, Width: 27.0, Height: 8
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Text: '120', X: 351.77231272444436, Y: 528.3859169396447, Width: 27.0, Height: 8
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Text: 'HTT, -41.1 ± 1.4
 kcal/mol, AUC: 0.617', X: 147.53546252799828, Y: 541.1859169396447, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 440.21368411227945, 541.1859169396447)
Updated viewBox: -0.25 0.0 445.46368411227945 546.1859169396447
Updated SVG: /disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/final_image/HTT_fold_final_3.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/final_image/HTT_fold_final_3.svg
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Text: 'G', X: 344.26783668204666, Y: 141.63821464187347, Width: 10.5, Height: 8
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Text: 'G', X: 364.26783668204666, Y: 141.63821464187347, Width: 10.5, Height: 8
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Text: 'C', X: 226.33725365429825, Y: 252.06879766962186, Width: 10.5, Height: 8
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Text: 'C', X: 226.33725365429825, Y: 272.06879766962186, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/final_image/HTT_fold_5.svg


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Text: 'G', X: 243.83725365429825, Y: 312.06879766962186, Width: 10.5, Height: 8
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Text: 'HTT, -40.2 ± 1.4
 kcal/mol, AUC: 0.782', X: 178.08601093965234, Y: 358.6451809102978, Width: 142.5, Height: 23
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Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/final_image/HTT_fold_final_1.svg
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Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'U', X: 112.37146710290202, Y: 610.5940531200356, Width: 10.5, Height: 8
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Text: 'C', X: 129.87146710290202, Y: 610.5940531200356, Width: 10.5, Height: 8
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Text: 'A', X: 147.37146710290202, Y: 610.5940531200356, Width: 10.5, Height: 8
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Text: 'A', X: 164.87146710290202, Y: 610.5940531200356, Width: 10.5, Height: 8
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Text: 'G', X: 182.37146710290202, Y: 610.5940531200356, Width: 10.5, Height: 8
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Text: 'A', X: 199.87146710290202, Y: 610.5940531200356, Width: 10.5, Height: 8
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Text: 'A', X: 217.37146710290202, Y: 610.5940531200356, Width: 10.5, Height: 8
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Text: 'A', X: 234.87146710290202, Y: 610.5940531200356, Width: 10.5, Height: 8
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Text: '1', X: 45.62146710290202, Y: 630.5940531200356, Width: 9.0, Height: 8
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Text: '10', X: 44.49329326119407, Y: 444.0868151401968, Width: 18.0, Height: 8
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Text: '20', X: 43.15868070410167, Y: 333.2311616731639, Width: 18.0, Height: 8
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Text: '30', X: -0.916653109670925, Y: 131.59903372938652, Width: 18.0, Height: 8
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Text: '40', X: 102.09209941046942, Y: 8.0, Width: 18.0, Height: 8
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Text: '50', X: 108.48045328074727, Y: 168.27298163345927, Width: 18.0, Height: 8
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Text: '60', X: 99.13964102751743, Y: 277.2503964795085, Width: 18.0, Height: 8
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Text: '70', X: 228.84135551635433, Y: 321.5532353729219, Width: 18.0, Height: 8
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Text: '80', X: 401.1905452781643, Y: 236.30180734321766, Width: 18.0, Height: 8
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Text: '90', X: 330.9897280126241, Y: 356.50973966896726, Width: 18.0, Height: 8
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Text: '100', X: 177.72928258825795, Y: 450.6908912744582, Width: 27.0, Height: 8
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Text: '110', X: 106.62146710290202, Y: 570.5940531200356, Width: 27.0, Height: 8
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Text: '120', X: 226.62146710290202, Y: 630.5940531200356, Width: 27.0, Height: 8
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Text: 'HTT, -39.4 ± 1.6
 kcal/mol, AUC: 0.568', X: 150.75311763122943, Y: 643.3940531200356, Width: 142.5, Height: 23
Calculated bounding box: (-0.916653109670925, 0.0, 439.25623526245886, 643.3940531200356)
Updated viewBox: -5.916653109670925 -5.0 450.17288837212976 653.3940531200356
Updated SVG: /disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/final_image/HTT_fold_final_5.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/final_image/HTT_fold_final_5.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGGGGGCAUUGGGCAGCUCACCGCUGCUAAGGAGGAGUCUGGUGGCCGAAGCCGUAGUGGGAGUAUUGUGGAACUUAUAGCUGGAGGGGGUUCCUCAUGCAGCCCUGUCCUUUCAAGAAA', '-structureDBN', '.(((((((..((((.((.(((((((.((....)).)))..)))))).....((((((((....))))))))........((..(((((...)))))..)).)))))))))))........', '-o', '/disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/final_image/HTT_fold_6.svg', '-title', 'HTT, -38.1 ± 1.6\n kcal/mol, AUC: 0.534', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,5,6,9,10,11,12,13,16,18,23,25,26,28,31,32,34,35,37,38,40,41,42,43,44,45,48,51,54,55,57,58,59,60,61,63,64,66,67,68,69,70,71,75,76,78,80,82,83,84,86,87,88,89,90,91,92,95,98,99,102,106,107,108,111,112,113,117', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,72,73,77,14,15,17,81,85,24,27,93,33,39,103,105,109', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '96,97,36,101,104,74,79,114,52,53,118,119,56,94', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '65,7,8,19,20,21,22,29,30,100,46,47,110,49,50,115,116,120,62']Output file: /disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/final_image/HTT_fold_6.svg


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Text: 'G', X: 199.7517650993482, Y: 467.90659716326115, Width: 10.5, Height: 8
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Text: 'G', X: 199.7517650993482, Y: 447.90659716326115, Width: 10.5, Height: 8
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Text: 'G', X: 199.7517650993482, Y: 427.90659716326115, Width: 10.5, Height: 8
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Text: 'G', X: 199.7517650993482, Y: 407.90659716326115, Width: 10.5, Height: 8
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Text: 'G', X: 199.7517650993482, Y: 387.90659716326115, Width: 10.5, Height: 8
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Text: 'C', X: 199.7517650993482, Y: 367.90659716326115, Width: 10.5, Height: 8
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Text: 'A', X: 199.7517650993482, Y: 347.90659716326115, Width: 10.5, Height: 8
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Text: 'U', X: 193.07339466543561, Y: 331.7135094877193, Width: 10.5, Height: 8
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Text: 'U', X: 199.77654827928907, Y: 315.53066512248404, Width: 10.5, Height: 8
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Text: 'G', X: 215.94911140410835, Y: 308.8027440398554, Width: 10.5, Height: 8
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Text: 'G', X: 230.09124702783927, Y: 294.66060841612443, Width: 10.5, Height: 8
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Text: 'G', X: 244.23338265157022, Y: 280.5184727923935, Width: 10.5, Height: 8
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Text: 'C', X: 258.3755182753012, Y: 266.37633716866253, Width: 10.5, Height: 8
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Text: 'A', X: 249.42529248690752, Y: 245.88801276266724, Width: 10.5, Height: 8
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Text: 'G', X: 247.01158731696825, Y: 223.6607320927082, Width: 10.5, Height: 8
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Text: 'C', X: 227.71167313384686, Y: 218.41541870606017, Width: 10.5, Height: 8
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Text: 'U', X: 209.50635645562645, Y: 217.21805390241985, Width: 10.5, Height: 8
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Text: 'C', X: 199.42096138288807, Y: 202.0143686894831, Width: 10.5, Height: 8
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Text: 'A', X: 185.27882575915712, Y: 187.87223306575214, Width: 10.5, Height: 8
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Text: 'C', X: 171.13669013542616, Y: 173.7300974420212, Width: 10.5, Height: 8
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Text: 'C', X: 156.9945545116952, Y: 159.58796181829024, Width: 10.5, Height: 8
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Text: 'G', X: 140.87167177685225, Y: 152.9096451249672, Width: 10.5, Height: 8
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Text: 'C', X: 120.87167177685227, Y: 152.9096451249672, Width: 10.5, Height: 8
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Text: 'U', X: 100.87167177685227, Y: 152.9096451249672, Width: 10.5, Height: 8
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Text: 'G', X: 84.69613534676954, Y: 159.58802227645646, Width: 10.5, Height: 8
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Text: 'C', X: 68.52059891668675, Y: 152.9096451249672, Width: 10.5, Height: 8
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Text: 'U', X: 48.52059891668675, Y: 152.9096451249672, Width: 10.5, Height: 8
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Text: 'A', X: 31.384154249095545, Y: 156.45837951220636, Width: 10.5, Height: 8
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Text: 'A', X: 17.81296730256177, Y: 145.4096630049002, Width: 10.5, Height: 8
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Text: 'G', X: 17.81296730256177, Y: 127.9096272450343, Width: 10.5, Height: 8
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Text: 'G', X: 31.384154249095545, Y: 116.86091073772815, Width: 10.5, Height: 8
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Text: 'A', X: 48.52059891668675, Y: 120.4096451249672, Width: 10.5, Height: 8
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Text: 'G', X: 68.52059891668675, Y: 120.4096451249672, Width: 10.5, Height: 8
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Text: 'G', X: 84.69613534676954, Y: 113.73126797347794, Width: 10.5, Height: 8
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Text: 'A', X: 100.87167177685227, Y: 120.4096451249672, Width: 10.5, Height: 8
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Text: 'G', X: 120.87167177685227, Y: 120.4096451249672, Width: 10.5, Height: 8
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Text: 'U', X: 140.87167177685225, Y: 120.4096451249672, Width: 10.5, Height: 8
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Text: 'C', X: 157.0647594523941, Y: 113.7312746910547, Width: 10.5, Height: 8
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Text: 'U', X: 173.24760381762937, Y: 120.43442830490807, Width: 10.5, Height: 8
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Text: 'G', X: 179.975524900258, Y: 136.60699142972743, Width: 10.5, Height: 8
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Text: 'G', X: 194.11766052398895, Y: 150.74912705345838, Width: 10.5, Height: 8
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Text: 'U', X: 208.2597961477199, Y: 164.89126267718933, Width: 10.5, Height: 8
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Text: 'G', X: 222.40193177145085, Y: 179.03339830092028, Width: 10.5, Height: 8
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Text: 'G', X: 236.23530738714996, Y: 187.0530581584879, Width: 10.5, Height: 8
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Text: 'C', X: 255.5352215702714, Y: 192.29837154513592, Width: 10.5, Height: 8
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Text: 'C', X: 265.4991444258352, Y: 177.911911197699, Width: 10.5, Height: 8
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Text: 'G', X: 278.56638327334673, Y: 166.27158178216763, Width: 10.5, Height: 8
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Text: 'A', X: 294.0042423396543, Y: 158.03007054642802, Width: 10.5, Height: 8
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Text: 'A', X: 310.94710232932823, Y: 153.64948892176818, Width: 10.5, Height: 8
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Text: 'G', X: 328.4449567379798, Y: 153.37546138002875, Width: 10.5, Height: 8
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Text: 'C', X: 345.51667985771826, Y: 157.22335297452383, Width: 10.5, Height: 8
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Text: 'C', X: 356.17524305746014, Y: 140.30014315731984, Width: 10.5, Height: 8
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Text: 'G', X: 366.833806257202, Y: 123.37693334011584, Width: 10.5, Height: 8
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Text: 'U', X: 377.49236945694383, Y: 106.45372352291184, Width: 10.5, Height: 8
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Text: 'A', X: 388.15093265668565, Y: 89.53051370570785, Width: 10.5, Height: 8
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Text: 'G', X: 398.80949585642753, Y: 72.60730388850385, Width: 10.5, Height: 8
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Text: 'U', X: 409.4680590561694, Y: 55.68409407129985, Width: 10.5, Height: 8
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Text: 'G', X: 420.12662225591123, Y: 38.760884254095856, Width: 10.5, Height: 8
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Text: 'G', X: 426.25631735029253, Y: 22.369481335293983, Width: 10.5, Height: 8
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Text: 'G', X: 442.83777242174693, Y: 16.774251285517096, Width: 10.5, Height: 8
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Text: 'A', X: 457.64561127038615, Y: 26.10051314273079, Width: 10.5, Height: 8
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Text: 'G', X: 459.7621309653264, Y: 43.472087509423034, Width: 10.5, Height: 8
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Text: 'U', X: 447.6268382088677, Y: 56.08104945367637, Width: 10.5, Height: 8
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Text: 'A', X: 436.9682750091258, Y: 73.00425927088037, Width: 10.5, Height: 8
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Text: 'U', X: 426.309711809384, Y: 89.92746908808437, Width: 10.5, Height: 8
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Text: 'U', X: 415.6511486096422, Y: 106.85067890528836, Width: 10.5, Height: 8
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Text: 'G', X: 404.9925854099003, Y: 123.77388872249236, Width: 10.5, Height: 8
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Text: 'U', X: 394.3340222101584, Y: 140.69709853969636, Width: 10.5, Height: 8
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Text: 'G', X: 383.6754590104166, Y: 157.62030835690035, Width: 10.5, Height: 8
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Text: 'G', X: 373.0168958106747, Y: 174.54351817410435, Width: 10.5, Height: 8
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Text: 'A', X: 383.86181367140324, Y: 188.2780642748698, Width: 10.5, Height: 8
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Text: 'A', X: 391.17331053111513, Y: 204.17749865696095, Width: 10.5, Height: 8
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Text: 'C', X: 394.54142198133525, Y: 221.3503209427385, Width: 10.5, Height: 8
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Text: 'U', X: 393.77729396866505, Y: 238.83363036573542, Width: 10.5, Height: 8
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Text: 'U', X: 388.92377206833, Y: 255.64711677287207, Width: 10.5, Height: 8
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Text: 'A', X: 380.2529990813283, Y: 270.8480277918828, Width: 10.5, Height: 8
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Text: 'U', X: 368.2511556607935, Y: 283.584030088874, Width: 10.5, Height: 8
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Text: 'A', X: 353.5911995789735, Y: 293.1410007218261, Width: 10.5, Height: 8
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Text: 'G', X: 337.09513217686214, Y: 298.9830688714626, Width: 10.5, Height: 8
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Text: 'C', X: 337.09513217686214, Y: 318.9830688714626, Width: 10.5, Height: 8
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Text: 'U', X: 347.4748154942639, Y: 333.0725080925937, Width: 10.5, Height: 8
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Text: 'G', X: 347.4748154942639, Y: 350.5725116164647, Width: 10.5, Height: 8
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Text: 'G', X: 337.09513217686214, Y: 364.6619508375958, Width: 10.5, Height: 8
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Text: 'A', X: 337.09513217686214, Y: 384.6619508375958, Width: 10.5, Height: 8
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Text: 'G', X: 337.09513217686214, Y: 404.6619508375958, Width: 10.5, Height: 8
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Text: 'G', X: 337.09513217686214, Y: 424.6619508375958, Width: 10.5, Height: 8
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Text: 'G', X: 337.09513217686214, Y: 444.6619508375957, Width: 10.5, Height: 8
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Text: 'G', X: 336.154931038305, Y: 462.13669872451715, Width: 10.5, Height: 8
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Text: 'G', X: 320.84513217686214, Y: 470.61377668302225, Width: 10.5, Height: 8
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Text: 'U', X: 305.5353333154193, Y: 462.1366987245172, Width: 10.5, Height: 8
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Text: 'U', X: 304.59513217686214, Y: 444.6619508375957, Width: 10.5, Height: 8
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Text: 'C', X: 304.59513217686214, Y: 424.6619508375958, Width: 10.5, Height: 8
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Text: 'C', X: 304.59513217686214, Y: 404.6619508375958, Width: 10.5, Height: 8
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Text: 'U', X: 304.59513217686214, Y: 384.6619508375958, Width: 10.5, Height: 8
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Text: 'C', X: 304.59513217686214, Y: 364.6619508375958, Width: 10.5, Height: 8
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Text: 'A', X: 294.21544885946037, Y: 350.5725116164647, Width: 10.5, Height: 8
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Text: 'U', X: 294.21544885946037, Y: 333.0725080925937, Width: 10.5, Height: 8
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Text: 'G', X: 304.59513217686214, Y: 318.9830688714626, Width: 10.5, Height: 8
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Text: 'C', X: 304.59513217686214, Y: 298.9830688714626, Width: 10.5, Height: 8
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Text: 'A', X: 292.56328436970955, Y: 295.16611420066374, Width: 10.5, Height: 8
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Text: 'G', X: 281.356488663864, Y: 289.3573075572252, Width: 10.5, Height: 8
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Text: 'C', X: 267.21435304013306, Y: 303.4994431809563, Width: 10.5, Height: 8
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Text: 'C', X: 253.0722174164021, Y: 317.64157880468724, Width: 10.5, Height: 8
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Text: 'C', X: 238.93008179267116, Y: 331.7837144284182, Width: 10.5, Height: 8
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Text: 'U', X: 232.2517650993482, Y: 347.90659716326115, Width: 10.5, Height: 8
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Text: 'G', X: 232.2517650993482, Y: 367.90659716326115, Width: 10.5, Height: 8
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Text: 'U', X: 232.2517650993482, Y: 387.90659716326115, Width: 10.5, Height: 8
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Text: 'C', X: 232.2517650993482, Y: 407.90659716326115, Width: 10.5, Height: 8
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Text: 'C', X: 232.2517650993482, Y: 427.90659716326115, Width: 10.5, Height: 8
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Text: 'U', X: 232.2517650993482, Y: 447.90659716326115, Width: 10.5, Height: 8
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Text: 'U', X: 232.2517650993482, Y: 467.90659716326115, Width: 10.5, Height: 8
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Text: 'U', X: 249.7517650993482, Y: 467.90659716326115, Width: 10.5, Height: 8
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Text: 'C', X: 267.25176509934823, Y: 467.90659716326115, Width: 10.5, Height: 8
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Text: 'A', X: 284.75176509934823, Y: 467.90659716326115, Width: 10.5, Height: 8
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Text: 'A', X: 337.25176509934823, Y: 467.90659716326115, Width: 10.5, Height: 8
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Text: 'A', X: 354.75176509934823, Y: 467.90659716326115, Width: 10.5, Height: 8
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Text: 'A', X: 372.25176509934823, Y: 467.90659716326115, Width: 10.5, Height: 8
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Text: '1', X: 183.0017650993482, Y: 487.90659716326115, Width: 9.0, Height: 8
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Text: '20', X: 167.3866901354262, Y: 202.0143686894831, Width: 18.0, Height: 8
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Text: '30', X: -4.0, Y: 153.99623462729903, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/final_image/HTT_fold_2.svg


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Text: '50', X: 304.51848524494636, Y: 133.82967533749706, Width: 18.0, Height: 8
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Text: '60', X: 408.5952424042419, Y: 8.0, Width: 18.0, Height: 8
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Text: '70', X: 396.8486688276206, Y: 168.27887155664217, Width: 18.0, Height: 8
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Text: '80', X: 350.3338876574035, Y: 309.5368448413406, Width: 18.0, Height: 8
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Text: '90', X: 317.09513217686214, Y: 490.61377668302225, Width: 18.0, Height: 8
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Text: '100', X: 279.7157399308114, Y: 310.094473531855, Width: 27.0, Height: 8
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Text: '110', X: 244.00176509934823, Y: 427.90659716326115, Width: 27.0, Height: 8
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Text: '120', X: 364.00176509934823, Y: 487.90659716326115, Width: 27.0, Height: 8
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Text: 'HTT, -38.1 ± 1.6
 kcal/mol, AUC: 0.534', X: 172.78754913394405, Y: 503.41377668302226, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 0.0, 470.2621309653264, 503.41377668302226)
Updated viewBox: -9.0 -5.0 484.2621309653264 513.4137766830222
Updated SVG: /disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/final_image/HTT_fold_final_6.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/final_image/HTT_fold_final_6.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGGGGGCAUUGGGCAGCUCACCGCUGCUAAGGAGGAGUCUGGUGGCCGAAGCCGUAGUGGGAGUAUUGUGGAACUUAUAGCUGGAGGGGGUUCCUCAUGCAGCCCUGUCCUUUCAAGAAA', '-structureDBN', '.(((((((..((((.(((...(((((((..(((....))))))))).).)))....(((((............))))).((..(((((...)))))..)).)))))))))))........', '-o', '/disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/final_image/HTT_fold_2.svg', '-title', 'HTT, -39.0 ± 1.7\n kcal/mol, AUC: 0.706', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,5,6,9,10,11,12,13,16,18,23,25,26,28,31,32,34,35,37,38,40,41,42,43,44,45,48,51,54,55,57,58,59,60,61,63,64,66,67,68,69,70,71,75,76,78,80,82,83,84,86,87,88,89,90,91,92,95,98,99,102,106,107,108,111,112,113,117', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,72,73,77,14,15,17,81,85,24,27,93,33,39,103,105,109', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '96,97,36,101,104,74,79,114,52,53,118,119,56,94', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '65,7,8,19,20,21,22,29,30,100,46,47,110,49,50,115,116,120,62']
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Text: 'A', X: 294.4063654447677, Y: 505.0896396566028, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 311.9063654447677, Y: 505.0896396566028, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 122.6563654447677, Y: 525.0896396566028, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: 121.5281916030597, Y: 338.582401676764, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: 107.90904112855097, Y: 255.26497983156736, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: -4.0, Y: 99.91602891698432, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 69.35293950616615, Y: 69.59800987926769, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 184.59225527147632, Y: 205.63171431390953, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 335.74460697117985, Y: 215.56090607373216, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 445.9253220206755, Y: 277.84089985005755, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 299.4498956239859, Y: 312.9698641674566, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 362.52478453369366, Y: 487.93796739204936, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '100', X: 235.96029935101504, Y: 347.6078846132919, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '110', X: 183.6563654447677, Y: 465.0896396566028, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '120', X: 303.6563654447677, Y: 525.0896396566028, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'HTT, -39.0 ± 1.7
 kcal/mol, AUC: 0.706', X: 167.56013837676912, Y: 537.8896396566028, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 463.9253220206755, 537.8896396566028)
Updated viewBox: -9.0 0.0 477.9253220206755 542.8896396566028
Updated SVG: /disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/final_image/HTT_fold_final_2.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/057ce46b-fa26-42a6-9907-8ef46f455406/final_image/HTT_fold_final_2.svg
