Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 97% [================================================= ] |                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/077b2301-9c2e-49b3-a7ec-1b6a5bdb8918/final_image/BCOR_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 158.39 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 158.39 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 158.39 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.03 MB
Based on canonical annotations, the following gene is in your area of interest: BCOR(-)
write fasta - Elapsed time since the previous call: 0.26 seconds
write fasta - Current memory usage: 172.03 MB
Length of region: 97 nt.
94.3% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.20 seconds
write dat - Current memory usage: 175.28 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/077b2301-9c2e-49b3-a7ec-1b6a5bdb8918/fasta/BCOR.fasta" "/disk1/www/rails/humanrnamap/public/result/077b2301-9c2e-49b3-a7ec-1b6a5bdb8918/ct/BCOR.ct" --SHAPE "BCOR.dat"

fold - Elapsed time since the previous call: 0.12 seconds
fold - Current memory usage: 175.28 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/077b2301-9c2e-49b3-a7ec-1b6a5bdb8918/ct/BCOR.ct" "/disk1/www/rails/humanrnamap/public/result/077b2301-9c2e-49b3-a7ec-1b6a5bdb8918/fold_FE/BCOR.txt" -sh "BCOR.dat"

efn2 - Elapsed time since the previous call: 0.41 seconds
efn2 - Current memory usage: 175.28 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/077b2301-9c2e-49b3-a7ec-1b6a5bdb8918/ct/BCOR.ct" 1 "/disk1/www/rails/humanrnamap/public/result/077b2301-9c2e-49b3-a7ec-1b6a5bdb8918/fold_dbn/BCOR_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.28 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CAGCAGCACCGUGAUUUCAUCGCCCUGAGAGAGGAGUUGGGGCGCAUCAGUGACUUCCACGAAACUUAUACUUUCAAACAGCCAGUCUUCACCGUAA', '-structureDBN', '.........(((((..((((((((((((........)))))))).....))))..).))))....................................', '-o', '/disk1/www/rails/humanrnamap/public/result/077b2301-9c2e-49b3-a7ec-1b6a5bdb8918/final_image/BCOR_fold_1.svg', '-title', 'BCOR, -21.4 ± 1.1\n kcal/mol, AUC: 0.657', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,6,11,12,13,15,16,17,20,22,26,27,29,31,33,34,36,37,38,39,40,41,42,44,45,47,50,51,52,55,56,61,63,66,67,69,72,73,74,78,81,85,86,88,89,94,95', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '64,18,83,21,23,24,25', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,2,4,5,68,7,70,76,77,82,84,87,90,91,28,96,35,43,48,53,57,59', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '65,71,8,9,10,75,14,79,80,19,92,93,30,32,97,46,49,54,58,60,62']
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Text: '70', X: 449.7909168608371, Y: 266.39705909149956, Width: 18.0, Height: 8
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Text: 'BCOR, -21.4 ± 1.1
 kcal/mol, AUC: 0.657', X: 399.39545843041856, Y: 279.1970590914996, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 940.2909168608371, 279.1970590914996)
Updated viewBox: -0.25 0.0 945.5409168608371 284.1970590914996
Updated SVG: /disk1/www/rails/humanrnamap/public/result/077b2301-9c2e-49b3-a7ec-1b6a5bdb8918/final_image/BCOR_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/077b2301-9c2e-49b3-a7ec-1b6a5bdb8918/final_image/BCOR_fold_final_1.svg
