Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 98% [==================================================] \                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/07934642-5e15-488b-8b9f-47924fc095f7/final_image/IQGAP1_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 159.11 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 159.11 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 159.11 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.73 MB
Based on canonical annotations, the following gene is in your area of interest: IQGAP1(+)
write fasta - Elapsed time since the previous call: 0.68 seconds
write fasta - Current memory usage: 172.73 MB
Length of region: 91 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.19 seconds
write dat - Current memory usage: 176.19 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/07934642-5e15-488b-8b9f-47924fc095f7/fasta/IQGAP1.fasta" "/disk1/www/rails/humanrnamap/public/result/07934642-5e15-488b-8b9f-47924fc095f7/ct/IQGAP1.ct" --SHAPE "IQGAP1.dat"

fold - Elapsed time since the previous call: 0.10 seconds
fold - Current memory usage: 176.19 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/07934642-5e15-488b-8b9f-47924fc095f7/ct/IQGAP1.ct" "/disk1/www/rails/humanrnamap/public/result/07934642-5e15-488b-8b9f-47924fc095f7/fold_FE/IQGAP1.txt" -sh "IQGAP1.dat"

efn2 - Elapsed time since the previous call: 0.44 seconds
efn2 - Current memory usage: 176.19 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/07934642-5e15-488b-8b9f-47924fc095f7/ct/IQGAP1.ct" 1 "/disk1/www/rails/humanrnamap/public/result/07934642-5e15-488b-8b9f-47924fc095f7/fold_dbn/IQGAP1_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 176.19 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CAGAUGGAGUCUCAGACAGGAGAGGCAAGCAAACUGCCCUAUGAUGUGACCCCUGAGCAGGCGCUAGCUCAUGAAGAAGUGAAGACACGGC', '-structureDBN', '.....((.(((.((..((..((.((((.......)))))).)).)).))))).(((((........))))).......(((....)))...', '-o', '/disk1/www/rails/humanrnamap/public/result/07934642-5e15-488b-8b9f-47924fc095f7/final_image/IQGAP1_fold_1.svg', '-title', 'IQGAP1, -24.8 ± 1.2\n kcal/mol, AUC: 0.789', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,5,6,7,9,10,12,15,19,20,22,24,25,29,35,36,40,42,43,45,46,47,48,54,55,57,60,61,63,65,67,69,72,73,76,79,80,81,84,89,90', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '68,37,38,39,50,51,52,53,56,26,27', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '32,66,70,8,41,11,13,14,17,49,82,21,87,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,2,4,71,74,75,77,78,16,18,83,85,86,23,88,91,28,30,33,34,44,58,59,62']
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Text: 'G', X: 159.75, Y: 188.89391645245786, Width: 10.5, Height: 8
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Text: 'C', X: 159.75, Y: 168.89391645245786, Width: 10.5, Height: 8
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Text: 'C', X: 167.24999272779968, Y: 113.05885426580471, Width: 10.5, Height: 8
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Text: 'G', X: 184.75000727220032, Y: 113.05885426580471, Width: 10.5, Height: 8
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Text: 'C', X: 199.43675460670462, Y: 122.57462863191193, Width: 10.5, Height: 8
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Text: 'U', X: 206.5882106905483, Y: 138.54670379248796, Width: 10.5, Height: 8
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Text: 'A', X: 203.9050680742837, Y: 155.8398022642777, Width: 10.5, Height: 8
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Text: 'G', X: 192.25, Y: 168.89391645245786, Width: 10.5, Height: 8
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Text: 'C', X: 192.25, Y: 188.89391645245786, Width: 10.5, Height: 8
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Text: 'C', X: 192.25, Y: 228.89391645245783, Width: 10.5, Height: 8
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Text: 'A', X: 192.25, Y: 248.89391645245786, Width: 10.5, Height: 8
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Text: 'U', X: 209.75, Y: 248.89391645245786, Width: 10.5, Height: 8
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Text: 'G', X: 227.25, Y: 248.89391645245786, Width: 10.5, Height: 8
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Text: 'A', X: 244.75, Y: 248.89391645245786, Width: 10.5, Height: 8
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Text: 'A', X: 262.25, Y: 248.89391645245786, Width: 10.5, Height: 8
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Text: 'G', X: 279.75, Y: 248.89391645245786, Width: 10.5, Height: 8
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Text: 'A', X: 297.25, Y: 248.89391645245786, Width: 10.5, Height: 8
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Text: 'A', X: 314.75, Y: 248.89391645245786, Width: 10.5, Height: 8
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Text: 'G', X: 332.25, Y: 248.89391645245786, Width: 10.5, Height: 8
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Text: 'U', X: 332.25, Y: 228.89391645245786, Width: 10.5, Height: 8
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Text: 'G', X: 332.25, Y: 208.89391645245786, Width: 10.5, Height: 8
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Text: 'A', X: 364.75, Y: 228.89391645245786, Width: 10.5, Height: 8
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Text: 'C', X: 364.75, Y: 248.89391645245786, Width: 10.5, Height: 8
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Text: 'C', X: 417.25, Y: 248.89391645245786, Width: 10.5, Height: 8
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Text: '30', X: 381.36987152269484, Y: 11.40471617144965, Width: 18.0, Height: 8
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Text: '40', X: 234.1277031527154, Y: 85.6413070671367, Width: 18.0, Height: 8
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Text: '50', X: 144.3344630859885, Y: 207.45429763460686, Width: 18.0, Height: 8
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Text: '60', X: 121.83981339315883, Y: 135.88413533817442, Width: 18.0, Height: 8
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Text: '70', X: 208.5, Y: 228.89391645245783, Width: 18.0, Height: 8
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Text: '80', X: 308.5, Y: 228.89391645245786, Width: 18.0, Height: 8
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Text: '90', X: 396.0, Y: 268.89391645245786, Width: 18.0, Height: 8
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Text: '91', X: 413.5, Y: 268.89391645245786, Width: 18.0, Height: 8
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Text: 'IQGAP1, -24.8 ± 1.2
 kcal/mol, AUC: 0.789', X: 145.0, Y: 281.69391645245787, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 3.4047161714496497, 431.5, 281.69391645245787)
Updated viewBox: -0.25 -1.5952838285503503 436.75 288.2892002810082
Updated SVG: /disk1/www/rails/humanrnamap/public/result/07934642-5e15-488b-8b9f-47924fc095f7/final_image/IQGAP1_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/07934642-5e15-488b-8b9f-47924fc095f7/final_image/IQGAP1_fold_final_1.svg
