Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
  0% [=                                                 ] /                     
  6% [====                                              ] -                     
 12% [=======                                           ] \                     
 18% [==========                                        ] |                     
 25% [=============                                     ] /                     
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 37% [===================                               ] \                     
 43% [======================                            ] |                     
 50% [==========================                        ] /                     
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 62% [================================                  ] \                     
 68% [===================================               ] |                     
 75% [======================================            ] /                     
 81% [=========================================         ] -                     
 87% [============================================      ] \                     
 93% [===============================================   ] |                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/0bac070b-7950-40fe-949a-decabdd30a71/final_image/MAVS_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 159.10 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 159.10 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 159.10 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.66 MB
Based on canonical annotations, the following gene is in your area of interest: MAVS(+)
write fasta - Elapsed time since the previous call: 0.28 seconds
write fasta - Current memory usage: 172.66 MB
Length of region: 80 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.19 seconds
write dat - Current memory usage: 176.00 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/0bac070b-7950-40fe-949a-decabdd30a71/fasta/MAVS.fasta" "/disk1/www/rails/humanrnamap/public/result/0bac070b-7950-40fe-949a-decabdd30a71/ct/MAVS.ct" --SHAPE "MAVS.dat"

fold - Elapsed time since the previous call: 0.08 seconds
fold - Current memory usage: 176.00 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/0bac070b-7950-40fe-949a-decabdd30a71/ct/MAVS.ct" "/disk1/www/rails/humanrnamap/public/result/0bac070b-7950-40fe-949a-decabdd30a71/fold_FE/MAVS.txt" -sh "MAVS.dat"

efn2 - Elapsed time since the previous call: 0.51 seconds
efn2 - Current memory usage: 176.00 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/0bac070b-7950-40fe-949a-decabdd30a71/ct/MAVS.ct" 1 "/disk1/www/rails/humanrnamap/public/result/0bac070b-7950-40fe-949a-decabdd30a71/fold_dbn/MAVS_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 176.00 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AAACUGGCAGUAUCUACCAAAAGCCGAACAUACGUAUAAACUGAUCCAGCAGUUCCACUCCUGGGUAUGUACACCACAGA', '-structureDBN', '....((((..............)))).............((..((((((.(((...))).))))))..))..........', '-o', '/disk1/www/rails/humanrnamap/public/result/0bac070b-7950-40fe-949a-decabdd30a71/final_image/MAVS_fold_1.svg', '-title', 'MAVS, -14.9 ± 0.9\n kcal/mol, AUC: 0.636', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '64,65,66,68,5,6,7,69,70,10,11,13,15,79,23,26,31,34,35,37,42,43,45,49,52,53,54,59,62,63', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '38,8,40,75,46,47,48,78,50,55,56', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,3,4,67,71,74,76,77,80,18,19,24,25,30,57,60,61', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '2,72,9,73,12,14,16,17,20,21,22,27,28,29,32,33,36,39,41,44,51,58']
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Text: 'MAVS, -14.9 ± 0.9
 kcal/mol, AUC: 0.636', X: 216.25, Y: 309.7817806717252, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 574.0, 309.7817806717252)
Updated viewBox: -0.25 0.0 579.25 314.7817806717252
Updated SVG: /disk1/www/rails/humanrnamap/public/result/0bac070b-7950-40fe-949a-decabdd30a71/final_image/MAVS_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/0bac070b-7950-40fe-949a-decabdd30a71/final_image/MAVS_fold_final_1.svg
