Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 97% [================================================= ] |                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/0df24993-29f7-4634-8720-4422406cbb1e/final_image/TFRC_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 159.08 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 159.08 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 159.08 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.77 MB
Based on canonical annotations, the following gene is in your area of interest: TFRC(-)
write fasta - Elapsed time since the previous call: 0.56 seconds
write fasta - Current memory usage: 172.77 MB
Length of region: 97 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.19 seconds
write dat - Current memory usage: 176.19 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/0df24993-29f7-4634-8720-4422406cbb1e/fasta/TFRC.fasta" "/disk1/www/rails/humanrnamap/public/result/0df24993-29f7-4634-8720-4422406cbb1e/ct/TFRC.ct" --SHAPE "TFRC.dat"

fold - Elapsed time since the previous call: 0.11 seconds
fold - Current memory usage: 176.19 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/0df24993-29f7-4634-8720-4422406cbb1e/ct/TFRC.ct" "/disk1/www/rails/humanrnamap/public/result/0df24993-29f7-4634-8720-4422406cbb1e/fold_FE/TFRC.txt" -sh "TFRC.dat"

efn2 - Elapsed time since the previous call: 0.40 seconds
efn2 - Current memory usage: 176.19 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/0df24993-29f7-4634-8720-4422406cbb1e/ct/TFRC.ct" 1 "/disk1/www/rails/humanrnamap/public/result/0df24993-29f7-4634-8720-4422406cbb1e/fold_dbn/TFRC_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 176.19 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'ACACCUAUAAGGAACUGAUUGAGAGGAUUCCUGAGUUGAACAAAGUGGCACGAGCAGCUGCAGAGGUCGCUGGUCAGUUCGUGAUUAAACUAACCCA', '-structureDBN', '...........(((((((((.((..((((.((((((((................))))).))).)))).))))))))))).................', '-o', '/disk1/www/rails/humanrnamap/public/result/0df24993-29f7-4634-8720-4422406cbb1e/final_image/TFRC_fold_1.svg', '-title', 'TFRC, -21.6 ± 1.0\n kcal/mol, AUC: 0.519', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '6,8,11,12,16,17,19,20,21,23,25,26,28,29,32,33,35,36,37,38,45,46,47,48,52,54,57,59,60,63,65,66,67,69,71,72,73,74,77,78,79,81,82,83,85,86,91', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,97,5,7,9,10,13,87,56,92,31', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '2,3,4,68,70,76,14,80,18,84,88,89,27,30,95,34,39,42,43,44,50,53,55,58,61', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,96,40,41,75,15,49,51,22,24,94,90,93,62']
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Text: 'TFRC, -21.6 ± 1.0
 kcal/mol, AUC: 0.519', X: 200.0, Y: 568.5445145778791, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 541.5, 568.5445145778791)
Updated viewBox: -0.25 0.0 546.75 573.5445145778791
Updated SVG: /disk1/www/rails/humanrnamap/public/result/0df24993-29f7-4634-8720-4422406cbb1e/final_image/TFRC_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/0df24993-29f7-4634-8720-4422406cbb1e/final_image/TFRC_fold_final_1.svg
