Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_5.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 159.24 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 159.24 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 159.24 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.89 MB
Based on canonical annotations, the following gene is in your area of interest: TNRC18(-)
write fasta - Elapsed time since the previous call: 0.40 seconds
write fasta - Current memory usage: 172.89 MB
Length of region: 111 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.19 seconds
write dat - Current memory usage: 176.61 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/fasta/TNRC18.fasta" "/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/ct/TNRC18.ct" --SHAPE "TNRC18.dat"

fold - Elapsed time since the previous call: 0.18 seconds
fold - Current memory usage: 176.61 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/ct/TNRC18.ct" "/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/fold_FE/TNRC18.txt" -sh "TNRC18.dat"

efn2 - Elapsed time since the previous call: 0.51 seconds
efn2 - Current memory usage: 176.61 MB
This region has 8 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/ct/TNRC18.ct" 1 "/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/fold_dbn/TNRC18_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 176.61 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/ct/TNRC18.ct" 2 "/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/fold_dbn/TNRC18_temp2.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.61 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/ct/TNRC18.ct" 3 "/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/fold_dbn/TNRC18_temp3.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.61 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/ct/TNRC18.ct" 4 "/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/fold_dbn/TNRC18_temp4.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.61 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/ct/TNRC18.ct" 5 "/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/fold_dbn/TNRC18_temp5.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.61 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/ct/TNRC18.ct" 6 "/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/fold_dbn/TNRC18_temp6.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.61 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/ct/TNRC18.ct" 7 "/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/fold_dbn/TNRC18_temp7.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.61 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/ct/TNRC18.ct" 8 "/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/fold_dbn/TNRC18_temp8.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 176.61 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGGGCCGGGUGGGGGGCUGAUCGCGGCACUCCCGCGGAGGAUGGAUGGCCGAGACUUCGGGCCCCAGCGGUCCGUGCACGGUCCCCCGCCGCCGCUGCUGUCCGGCCUGGC', '-structureDBN', '(((((((((.(((((((((....)))).)))))((((.((.(((..(((((......((((((.....))))))....)))))..))))).)))).....)))))))))..', '-o', '/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_5.svg', '-title', 'TNRC18, -68.0 ± 1.7\n kcal/mol, AUC: 0.78', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,7,8,9,10,11,12,13,14,15,16,18,19,21,23,25,26,30,34,36,37,39,40,42,43,44,46,47,48,51,53,56,57,59,60,61,67,69,70,71,74,75,76,80,81,82,88,91,94,96,97,99,100,101,104,105,108,109,110', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '6,72,73,17,83,84,85,86,24,89,90,31,32,98,35,102,103,106,111,49,58,62,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '64,1,33,5,38,41,107,77,50,22,87,92,93,95', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '65,66,68,45,78,79,20,52,54,55,27,28,29']
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Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_7.svg


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Text: 'TNRC18, -68.0 ± 1.7
 kcal/mol, AUC: 0.78', X: 114.37422482480136, Y: 769.0755130346561, Width: 136.5, Height: 23
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Updated SVG: /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_final_5.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_final_5.svg
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Text: 'G', X: 124.08862222978547, Y: 179.74848928901088, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'C', X: 576.2789853418933, Y: 357.3983028352545, Width: 10.5, Height: 8
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Text: 'C', X: 576.2789853418933, Y: 377.3983028352545, Width: 10.5, Height: 8
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Text: 'U', X: 576.2789853418933, Y: 397.3983028352545, Width: 10.5, Height: 8
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Text: 'G', X: 576.2789853418933, Y: 417.3983028352545, Width: 10.5, Height: 8
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Text: 'G', X: 593.7789853418933, Y: 417.3983028352545, Width: 10.5, Height: 8
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Text: 'C', X: 611.2789853418933, Y: 417.3983028352545, Width: 10.5, Height: 8
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Text: '1', X: 544.5289853418933, Y: 437.3983028352545, Width: 9.0, Height: 8
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Text: '10', X: 484.37634418497953, Y: 301.74566167834075, Width: 18.0, Height: 8
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Text: '20', X: 296.530130884545, Y: 311.125927357953, Width: 18.0, Height: 8
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Text: '30', X: 102.98322521355419, Y: 291.49046186123314, Width: 18.0, Height: 8
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Text: '40', X: 1.554864555391834, Y: 181.29817251919195, Width: 18.0, Height: 8
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Text: '50', X: 102.43838021484723, Y: 49.61105115667203, Width: 18.0, Height: 8
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Text: '60', X: 145.54399109756002, Y: 107.79599204428973, Width: 18.0, Height: 8
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Text: '70', X: 163.8699312648316, Y: 218.15890843736406, Width: 18.0, Height: 8
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Text: '80', X: 324.3763441849795, Y: 229.24566167834075, Width: 18.0, Height: 8
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Text: '90', X: 506.5550371227175, Y: 240.16816121882164, Width: 18.0, Height: 8
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Text: '100', X: 603.5661779575411, Y: 244.7100900715746, Width: 27.0, Height: 8
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Text: '110', X: 585.5289853418933, Y: 437.3983028352545, Width: 27.0, Height: 8
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Text: '111', X: 603.0289853418933, Y: 437.3983028352545, Width: 27.0, Height: 8
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Text: 'TNRC18, -64.7 ± 1.8
 kcal/mol, AUC: 0.767', X: 242.01449267094665, Y: 450.19830283525454, Width: 142.5, Height: 23
Calculated bounding box: (1.554864555391834, 5.0, 630.5661779575411, 450.19830283525454)
Updated viewBox: -3.445135444608166 0.0 639.0113134021492 455.19830283525454
Updated SVG: /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_final_7.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_final_7.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGGGCCGGGUGGGGGGCUGAUCGCGGCACUCCCGCGGAGGAUGGAUGGCCGAGACUUCGGGCCCCAGCGGUCCGUGCACGGUCCCCCGCCGCCGCUGCUGUCCGGCCUGGC', '-structureDBN', '(((((((((((((((((((.((((((.....))))))...((((((((((((....)).))))......))))))...))))))))))))((....))....)))))))..', '-o', '/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_3.svg', '-title', 'TNRC18, -63.1 ± 1.5\n kcal/mol, AUC: 0.799', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,7,8,9,10,11,12,13,14,15,16,18,19,21,23,25,26,30,34,36,37,39,40,42,43,44,46,47,48,51,53,56,57,59,60,61,67,69,70,71,74,75,76,80,81,82,88,91,94,96,97,99,100,101,104,105,108,109,110', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '6,72,73,17,83,84,85,86,24,89,90,31,32,98,35,102,103,106,111,49,58,62,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '64,1,33,5,38,41,107,77,50,22,87,92,93,95', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '65,66,68,45,78,79,20,52,54,55,27,28,29']Output file: /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_3.svg


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Text: 'C', X: 508.8009208838299, Y: 317.2673913115183, Width: 10.5, Height: 8
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Text: 'G', X: 508.8009208838299, Y: 297.2673913115183, Width: 10.5, Height: 8
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Text: 'G', X: 508.8009208838299, Y: 277.2673913115183, Width: 10.5, Height: 8
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Text: 'G', X: 508.8009208838299, Y: 257.2673913115183, Width: 10.5, Height: 8
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Text: 'C', X: 508.8009208838299, Y: 237.26739131151828, Width: 10.5, Height: 8
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Text: 'C', X: 508.8009208838299, Y: 217.26739131151828, Width: 10.5, Height: 8
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Text: 'G', X: 508.8009208838299, Y: 197.26739131151834, Width: 10.5, Height: 8
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Text: 'G', X: 493.14827972691614, Y: 181.61475015460456, Width: 10.5, Height: 8
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Text: 'G', X: 473.14827972691614, Y: 181.61475015460456, Width: 10.5, Height: 8
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Text: 'U', X: 453.14827972691614, Y: 181.61475015460456, Width: 10.5, Height: 8
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Text: 'G', X: 433.14827972691614, Y: 181.61475015460456, Width: 10.5, Height: 8
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Text: 'G', X: 413.14827972691614, Y: 181.61475015460456, Width: 10.5, Height: 8
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Text: 'G', X: 393.14827972691614, Y: 181.61475015460456, Width: 10.5, Height: 8
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Text: 'G', X: 373.14827972691614, Y: 181.61475015460456, Width: 10.5, Height: 8
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Text: 'G', X: 353.14827972691614, Y: 181.61475015460456, Width: 10.5, Height: 8
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Text: 'G', X: 333.14827972691614, Y: 181.61475015460456, Width: 10.5, Height: 8
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Text: 'C', X: 313.14827972691614, Y: 181.61475015460456, Width: 10.5, Height: 8
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Text: 'U', X: 293.14827972691614, Y: 181.61475015460456, Width: 10.5, Height: 8
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Text: 'G', X: 273.14827972691614, Y: 181.61475015460456, Width: 10.5, Height: 8
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Text: 'A', X: 263.39573073607573, Y: 196.43130683141248, Width: 10.5, Height: 8
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Text: 'U', X: 248.57917405926787, Y: 206.18385582225284, Width: 10.5, Height: 8
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Text: 'C', X: 248.57917405926787, Y: 226.18385582225284, Width: 10.5, Height: 8
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Text: 'G', X: 248.57917405926787, Y: 246.18385582225284, Width: 10.5, Height: 8
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Text: 'C', X: 248.57917405926787, Y: 266.18385582225284, Width: 10.5, Height: 8
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Text: 'G', X: 248.57917405926787, Y: 286.18385582225284, Width: 10.5, Height: 8
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Text: 'G', X: 248.57917405926787, Y: 306.18385582225284, Width: 10.5, Height: 8
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Text: 'C', X: 255.22734366408577, Y: 322.37189612190747, Width: 10.5, Height: 8
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Text: 'A', X: 248.50112440804628, Y: 338.5276623481609, Width: 10.5, Height: 8
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Text: 'C', X: 232.32917405926787, Y: 345.21487624890534, Width: 10.5, Height: 8
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Text: 'U', X: 216.15722371048935, Y: 338.5276623481609, Width: 10.5, Height: 8
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Text: 'C', X: 209.43100445444998, Y: 322.37189612190747, Width: 10.5, Height: 8
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Text: 'C', X: 216.07917405926787, Y: 306.18385582225284, Width: 10.5, Height: 8
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Text: 'C', X: 216.07917405926787, Y: 286.18385582225284, Width: 10.5, Height: 8
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Text: 'G', X: 216.07917405926787, Y: 266.18385582225284, Width: 10.5, Height: 8
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Text: 'C', X: 216.07917405926787, Y: 246.18385582225284, Width: 10.5, Height: 8
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Text: 'G', X: 216.07917405926787, Y: 226.18385582225284, Width: 10.5, Height: 8
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Text: 'G', X: 216.07917405926787, Y: 206.18385582225284, Width: 10.5, Height: 8
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Text: 'A', X: 201.4782388114652, Y: 196.6454419922626, Width: 10.5, Height: 8
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Text: 'G', X: 191.7387616591177, Y: 182.17784947306376, Width: 10.5, Height: 8
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Text: 'G', X: 188.39547922098473, Y: 165.06086635565816, Width: 10.5, Height: 8
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Text: 'A', X: 191.9752224454221, Y: 147.99176892932155, Width: 10.5, Height: 8
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Text: 'U', X: 177.83308682169104, Y: 133.84963330559066, Width: 10.5, Height: 8
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Text: 'G', X: 163.6909511979602, Y: 119.7074976818597, Width: 10.5, Height: 8
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Text: 'G', X: 149.54881557422914, Y: 105.56536205812876, Width: 10.5, Height: 8
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Text: 'A', X: 135.4066799504983, Y: 91.4232264343978, Width: 10.5, Height: 8
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Text: 'U', X: 121.26454432676724, Y: 77.28109081066685, Width: 10.5, Height: 8
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Text: 'G', X: 103.05734019459442, Y: 77.28109081066685, Width: 10.5, Height: 8
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Text: 'G', X: 88.91520457086347, Y: 91.4232264343978, Width: 10.5, Height: 8
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Text: 'C', X: 74.77306894713251, Y: 105.56536205812876, Width: 10.5, Height: 8
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Text: 'C', X: 60.630933323401564, Y: 119.7074976818597, Width: 10.5, Height: 8
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Text: 'G', X: 51.25222368903678, Y: 134.48228516782598, Width: 10.5, Height: 8
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Text: 'A', X: 44.473208569465214, Y: 153.29836749142936, Width: 10.5, Height: 8
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Text: 'G', X: 42.003461613344825, Y: 170.62325137471476, Width: 10.5, Height: 8
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Text: 'A', X: 27.008819569709203, Y: 179.64610910272, Width: 10.5, Height: 8
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Text: 'C', X: 10.54471389352716, Y: 173.71445875226135, Width: 10.5, Height: 8
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Text: 'U', X: 4.75, Y: 157.2016593987674, Width: 10.5, Height: 8
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Text: 'U', X: 13.897074793609704, Y: 142.2824679221257, Width: 10.5, Height: 8
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Text: 'C', X: 20.67608991318116, Y: 123.46638559852232, Width: 10.5, Height: 8
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Text: 'G', X: 22.875252263247148, Y: 106.10511591689902, Width: 10.5, Height: 8
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Text: 'G', X: 37.649962934838754, Y: 96.7265272932969, Width: 10.5, Height: 8
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Text: 'G', X: 51.792098558569705, Y: 82.58439166956595, Width: 10.5, Height: 8
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Text: 'C', X: 65.93423418230066, Y: 68.442256045835, Width: 10.5, Height: 8
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Text: 'C', X: 80.07636980603161, Y: 54.30012042210399, Width: 10.5, Height: 8
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Text: 'C', X: 79.85756992392817, Y: 36.90269560360673, Width: 10.5, Height: 8
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Text: 'C', X: 88.43033848279515, Y: 21.76248744982729, Width: 10.5, Height: 8
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Text: 'A', X: 103.46154194077849, Y: 13.0, Width: 10.5, Height: 8
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Text: 'G', X: 120.86034258058328, Y: 13.0, Width: 10.5, Height: 8
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Text: 'C', X: 135.89154603856673, Y: 21.76248744982729, Width: 10.5, Height: 8
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Text: 'G', X: 144.4643145974337, Y: 36.902695603606844, Width: 10.5, Height: 8
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Text: 'G', X: 144.24551471533005, Y: 54.30012042210399, Width: 10.5, Height: 8
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Text: 'U', X: 158.3876503390611, Y: 68.442256045835, Width: 10.5, Height: 8
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Text: 'C', X: 172.52978596279195, Y: 82.58439166956595, Width: 10.5, Height: 8
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Text: 'C', X: 186.671921586523, Y: 96.7265272932969, Width: 10.5, Height: 8
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Text: 'G', X: 200.81405721025385, Y: 110.86866291702785, Width: 10.5, Height: 8
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Text: 'U', X: 214.95619283398491, Y: 125.0107985407588, Width: 10.5, Height: 8
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Text: 'G', X: 232.02529026032153, Y: 121.43105531632153, Width: 10.5, Height: 8
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Text: 'C', X: 249.14227337772707, Y: 124.7743377544544, Width: 10.5, Height: 8
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Text: 'G', X: 293.14827972691614, Y: 149.11475015460456, Width: 10.5, Height: 8
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Text: 'G', X: 313.14827972691614, Y: 149.11475015460456, Width: 10.5, Height: 8
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Text: 'U', X: 333.14827972691614, Y: 149.11475015460456, Width: 10.5, Height: 8
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Text: 'C', X: 353.14827972691614, Y: 149.11475015460456, Width: 10.5, Height: 8
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Text: 'C', X: 373.14827972691614, Y: 149.11475015460456, Width: 10.5, Height: 8
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Text: 'C', X: 393.14827972691614, Y: 149.11475015460456, Width: 10.5, Height: 8
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Text: 'C', X: 413.14827972691614, Y: 149.11475015460456, Width: 10.5, Height: 8
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Text: 'C', X: 433.14827972691614, Y: 149.11475015460456, Width: 10.5, Height: 8
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Text: 'G', X: 453.14827972691614, Y: 149.11475015460456, Width: 10.5, Height: 8
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Text: 'C', X: 473.14827972691614, Y: 149.11475015460456, Width: 10.5, Height: 8
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Text: 'C', X: 493.14827972691614, Y: 149.11475015460456, Width: 10.5, Height: 8
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Text: 'G', X: 500.8914240498731, Y: 138.94203785028503, Width: 10.5, Height: 8
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Text: 'C', X: 495.56498060369336, Y: 119.66435644886514, Width: 10.5, Height: 8
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Text: 'C', X: 487.58059688939494, Y: 104.0919170670781, Width: 10.5, Height: 8
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Text: 'C', X: 511.48397643171313, Y: 83.40770043685455, Width: 10.5, Height: 8
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Text: 'C', X: 532.2176563271803, Y: 130.28656725024314, Width: 10.5, Height: 8
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Text: 'U', X: 560.6289782546181, Y: 169.37010238726947, Width: 10.5, Height: 8
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Text: 'C', X: 541.3009208838299, Y: 197.26739131151834, Width: 10.5, Height: 8
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Text: 'G', X: 541.3009208838299, Y: 217.26739131151828, Width: 10.5, Height: 8
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Text: 'G', X: 541.3009208838299, Y: 237.26739131151828, Width: 10.5, Height: 8
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Text: 'C', X: 541.3009208838299, Y: 257.2673913115183, Width: 10.5, Height: 8
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Warning: Font Verdana not found. Using default font.
Text: '90', X: 471.57697266465414, Y: 140.03724969508545, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Text: '111', X: 568.0509208838299, Y: 337.2673913115183, Width: 27.0, Height: 8
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Text: 'TNRC18, -63.1 ± 1.5
 kcal/mol, AUC: 0.799', X: 224.52546044191496, Y: 365.4868510118507, Width: 142.5, Height: 23/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_8.svg


Calculated bounding box: (4.75, 5.0, 595.5881134994777, 365.4868510118507)
Updated viewBox: -0.25 0.0 600.8381134994777 370.4868510118507
Updated SVG: /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_final_3.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_final_3.svg
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Text: '10', X: 567.3925351511017, Y: 159.44294853901374, Width: 18.0, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_1.svg


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Text: 'TNRC18, -63.0 ± 1.5
 kcal/mol, AUC: 0.751', X: 283.52258815400774, Y: 307.8955896959275, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 713.5823689236632, 307.8955896959275)
Updated viewBox: -0.25 0.0 718.8323689236632 312.8955896959275
Updated SVG: /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_final_8.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_final_8.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGGGCCGGGUGGGGGGCUGAUCGCGGCACUCCCGCGGAGGAUGGAUGGCCGAGACUUCGGGCCCCAGCGGUCCGUGCACGGUCCCCCGCCGCCGCUGCUGUCCGGCCUGGC', '-structureDBN', '(((((((((((((((((((.((((((.....))))))((..(((....)))...)).((((((.....))))))....))))))))))))((....))....)))))))..', '-o', '/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_1.svg', '-title', 'TNRC18, -62.0 ± 1.3\n kcal/mol, AUC: 0.816', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,7,8,9,10,11,12,13,14,15,16,18,19,21,23,25,26,30,34,36,37,39,40,42,43,44,46,47,48,51,53,56,57,59,60,61,67,69,70,71,74,75,76,80,81,82,88,91,94,96,97,99,100,101,104,105,108,109,110', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '6,72,73,17,83,84,85,86,24,89,90,31,32,98,35,102,103,106,111,49,58,62,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '64,1,33,5,38,41,107,77,50,22,87,92,93,95', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '65,66,68,45,78,79,20,52,54,55,27,28,29']
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Text: 'G', X: 109.96964308800148, Y: 201.91244243431333, Width: 10.5, Height: 8
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Text: 'U', X: 72.42552796867369, Y: 233.26662840552586, Width: 10.5, Height: 8
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Text: 'U', X: 106.32340101391742, Y: 146.3785462377641, Width: 10.5, Height: 8
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Text: 'G', X: 96.82888708685937, Y: 115.36484836969396, Width: 10.5, Height: 8
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Text: 'G', X: 82.68675146312842, Y: 101.22271274596301, Width: 10.5, Height: 8
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Text: 'G', X: 68.54461583939747, Y: 87.08057712223206, Width: 10.5, Height: 8
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Text: 'C', X: 54.402480215666515, Y: 72.9384414985011, Width: 10.5, Height: 8
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Text: 'C', X: 40.260344591935564, Y: 58.796305874770155, Width: 10.5, Height: 8
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Text: 'C', X: 321.53822228169145, Y: 134.52114636192573, Width: 10.5, Height: 8
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Text: 'C', X: 361.53822228169145, Y: 134.52114636192573, Width: 10.5, Height: 8
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_2.svg


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Text: 'TNRC18, -62.0 ± 1.3
 kcal/mol, AUC: 0.816', X: 188.7204317193026, Y: 356.3962083655611, Width: 142.5, Height: 23
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Updated viewBox: -0.25 0.0 529.228056054253 361.3962083655611
Updated SVG: /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_final_1.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGGGCCGGGUGGGGGGCUGAUCGCGGCACUCCCGCGGAGGAUGGAUGGCCGAGACUUCGGGCCCCAGCGGUCCGUGCACGGUCCCCCGCCGCCGCUGCUGUCCGGCCUGGC', '-structureDBN', '(((((((((((((((((((.((.((((..(((..........)))..)))).))...((((((.....))))))....))))))))))))((....))....)))))))..', '-o', '/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_2.svg', '-title', 'TNRC18, -61.8 ± 1.6\n kcal/mol, AUC: 0.811', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,7,8,9,10,11,12,13,14,15,16,18,19,21,23,25,26,30,34,36,37,39,40,42,43,44,46,47,48,51,53,56,57,59,60,61,67,69,70,71,74,75,76,80,81,82,88,91,94,96,97,99,100,101,104,105,108,109,110', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '6,72,73,17,83,84,85,86,24,89,90,31,32,98,35,102,103,106,111,49,58,62,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '64,1,33,5,38,41,107,77,50,22,87,92,93,95', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '65,66,68,45,78,79,20,52,54,55,27,28,29']
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Text: 'G', X: 247.52256355277297, Y: 101.761598089475, Width: 10.5, Height: 8
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Text: 'U', X: 267.52256355277297, Y: 101.761598089475, Width: 10.5, Height: 8
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Text: 'C', X: 287.52256355277297, Y: 101.761598089475, Width: 10.5, Height: 8
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Text: 'C', X: 307.52256355277297, Y: 101.761598089475, Width: 10.5, Height: 8
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Text: 'C', X: 327.52256355277297, Y: 101.761598089475, Width: 10.5, Height: 8
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Text: 'C', X: 347.52256355277297, Y: 101.761598089475, Width: 10.5, Height: 8
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Text: 'C', X: 367.52256355277297, Y: 101.761598089475, Width: 10.5, Height: 8
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Text: 'G', X: 387.52256355277297, Y: 101.761598089475, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_4.svg


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Text: 'TNRC18, -61.8 ± 1.6
 kcal/mol, AUC: 0.811', X: 191.7126023548434, Y: 445.29018378033317, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 529.9623973253346, 445.29018378033317)
Updated viewBox: -0.25 0.0 535.2123973253346 450.29018378033317
Updated SVG: /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_final_2.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_final_2.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGGGCCGGGUGGGGGGCUGAUCGCGGCACUCCCGCGGAGGAUGGAUGGCCGAGACUUCGGGCCCCAGCGGUCCGUGCACGGUCCCCCGCCGCCGCUGCUGUCCGGCCUGGC', '-structureDBN', '(((((((((((((((((((.....((....))((((((...(((..((((((....)).)))))))....))))))..))))))))))))((....))....)))))))..', '-o', '/disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_4.svg', '-title', 'TNRC18, -60.6 ± 1.3\n kcal/mol, AUC: 0.789', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,7,8,9,10,11,12,13,14,15,16,18,19,21,23,25,26,30,34,36,37,39,40,42,43,44,46,47,48,51,53,56,57,59,60,61,67,69,70,71,74,75,76,80,81,82,88,91,94,96,97,99,100,101,104,105,108,109,110', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '6,72,73,17,83,84,85,86,24,89,90,31,32,98,35,102,103,106,111,49,58,62,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '64,1,33,5,38,41,107,77,50,22,87,92,93,95', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '65,66,68,45,78,79,20,52,54,55,27,28,29']
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Text: 'G', X: 64.82905839167711, Y: 251.58856905626573, Width: 10.5, Height: 8
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Text: 'A', X: 60.20591810349856, Y: 234.71020386391507, Width: 10.5, Height: 8
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Text: 'U', X: 64.07550014463413, Y: 217.64330688416334, Width: 10.5, Height: 8
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Text: 'G', X: 52.210603700730076, Y: 201.54286489099337, Width: 10.5, Height: 8
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Text: 'G', X: 40.34570725682602, Y: 185.4424228978233, Width: 10.5, Height: 8
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Text: 'A', X: 26.066723736691984, Y: 177.2764475411655, Width: 10.5, Height: 8
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Text: 'G', X: 27.581263142900298, Y: 146.60499380702055, Width: 10.5, Height: 8
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Text: 'G', X: 27.581263142900298, Y: 126.60499380702055, Width: 10.5, Height: 8
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Text: 'C', X: 27.581263142900298, Y: 106.60499380702055, Width: 10.5, Height: 8
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Text: 'C', X: 27.581263142900298, Y: 86.60499380702055, Width: 10.5, Height: 8
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Text: 'A', X: 8.972689185365766, Y: 20.447570583363586, Width: 10.5, Height: 8
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Text: 'C', X: 24.808880141602913, Y: 13.0, Width: 10.5, Height: 8
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Text: 'U', X: 40.58267402998035, Y: 20.578830910079432, Width: 10.5, Height: 8
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Text: 'U', X: 44.66417687835224, Y: 37.59625098761535, Width: 10.5, Height: 8
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Text: 'G', X: 63.89689763514389, Y: 69.52603208736082, Width: 10.5, Height: 8
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Text: 'G', X: 60.0812631429003, Y: 86.60499380702055, Width: 10.5, Height: 8
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Text: 'G', X: 60.0812631429003, Y: 106.60499380702055, Width: 10.5, Height: 8
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Text: 'C', X: 60.0812631429003, Y: 126.60499380702055, Width: 10.5, Height: 8
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Text: 'C', X: 60.0812631429003, Y: 146.60499380702055, Width: 10.5, Height: 8
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Text: 'C', X: 66.50892549572745, Y: 166.1619661764792, Width: 10.5, Height: 8
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Text: 'C', X: 78.3738219396314, Y: 182.2624081696493, Width: 10.5, Height: 8
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Text: 'A', X: 90.23871838353534, Y: 198.36285016281937, Width: 10.5, Height: 8
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Text: 'G', X: 146.31962842294365, Y: 312.9951050216518, Width: 10.5, Height: 8
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Text: 'U', X: 153.92215183085, Y: 331.4937978898583, Width: 10.5, Height: 8
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Text: 'G', X: 161.52467523875657, Y: 349.9924907580649, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_6.svg


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Text: 'G', X: 242.83000326739221, Y: 377.67454597202357, Width: 10.5, Height: 8
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Text: 'U', X: 262.8300032673922, Y: 377.67454597202357, Width: 10.5, Height: 8
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Text: 'C', X: 302.8300032673922, Y: 377.67454597202357, Width: 10.5, Height: 8
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Text: 'TNRC18, -60.6 ± 1.3
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Calculated bounding box: (3.8312631429002977, 5.0, 525.2698370399538, 578.6271871289373)
Updated viewBox: -1.1687368570997023 0.0 531.4385738970535 583.6271871289373
Updated SVG: /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_final_4.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/0ecd2a2e-23b6-4f70-bd64-f2b4a11d3e34/final_image/TNRC18_fold_final_4.svg
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