Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/141b7d0e-f4e2-4760-b8bc-49af70934a74/final_image/ZMIZ1_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 159.34 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 159.34 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 159.34 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.94 MB
Based on canonical annotations, the following gene is in your area of interest: ZMIZ1(+)
write fasta - Elapsed time since the previous call: 0.43 seconds
write fasta - Current memory usage: 172.94 MB
Length of region: 91 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.18 seconds
write dat - Current memory usage: 176.55 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/141b7d0e-f4e2-4760-b8bc-49af70934a74/fasta/ZMIZ1.fasta" "/disk1/www/rails/humanrnamap/public/result/141b7d0e-f4e2-4760-b8bc-49af70934a74/ct/ZMIZ1.ct" --SHAPE "ZMIZ1.dat"

fold - Elapsed time since the previous call: 0.12 seconds
fold - Current memory usage: 176.55 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/141b7d0e-f4e2-4760-b8bc-49af70934a74/ct/ZMIZ1.ct" "/disk1/www/rails/humanrnamap/public/result/141b7d0e-f4e2-4760-b8bc-49af70934a74/fold_FE/ZMIZ1.txt" -sh "ZMIZ1.dat"

efn2 - Elapsed time since the previous call: 0.44 seconds
efn2 - Current memory usage: 176.55 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/141b7d0e-f4e2-4760-b8bc-49af70934a74/ct/ZMIZ1.ct" 1 "/disk1/www/rails/humanrnamap/public/result/141b7d0e-f4e2-4760-b8bc-49af70934a74/fold_dbn/ZMIZ1_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.55 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AUGGUCCUGAACUCUGGAGAGAUCCUUCCCUGAUCCUUUCGGACGACUACUUGGAGCCAUAAGUAACCUCAGCAAAAACGAGGCCUCUGCA', '-structureDBN', '(((((((.....(((((((.((((.......)))).))))))).........))).)))).((...((((.........))))...))...', '-o', '/disk1/www/rails/humanrnamap/public/result/141b7d0e-f4e2-4760-b8bc-49af70934a74/final_image/ZMIZ1_fold_1.svg', '-title', 'ZMIZ1, -19.1 ± 1.0\n kcal/mol, AUC: 0.713', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,5,8,9,13,15,16,17,19,21,23,26,27,31,32,34,37,38,39,41,42,45,48,51,52,53,54,56,60,63,64,69,72,80,82,83,86,88,89', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '18,68,24,43,76,14,79', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '67,36,6,7,70,74,11,75,77,87,55,58,28,29', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '1,65,66,71,73,10,12,78,81,20,84,22,85,25,90,91,30,33,35,40,44,46,47,49,50,57,59,61,62']
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Text: '30', X: 37.89232459493454, Y: 8.0, Width: 18.0, Height: 8
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Text: '50', X: 357.1766885258935, Y: 183.1076920779196, Width: 18.0, Height: 8
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Text: '80', X: 430.3669441181868, Y: 227.27931352622073, Width: 18.0, Height: 8
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Text: 'ZMIZ1, -19.1 ± 1.0
 kcal/mol, AUC: 0.713', X: 170.04354162359567, Y: 393.00963941783317, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 481.58708324719134, 393.00963941783317)
Updated viewBox: -0.25 -5.0 486.83708324719134 403.00963941783317
Updated SVG: /disk1/www/rails/humanrnamap/public/result/141b7d0e-f4e2-4760-b8bc-49af70934a74/final_image/ZMIZ1_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/141b7d0e-f4e2-4760-b8bc-49af70934a74/final_image/ZMIZ1_fold_final_1.svg
