Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 96% [================================================= ] |                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/16c9d3e0-4968-4391-a189-261b11f6fda6/final_image/CLASP1_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 157.18 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 157.18 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 157.18 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 170.75 MB
Based on canonical annotations, the following gene is in your area of interest: CLASP1(-)
write fasta - Elapsed time since the previous call: 1.52 seconds
write fasta - Current memory usage: 170.75 MB
Length of region: 98 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.19 seconds
write dat - Current memory usage: 174.36 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/16c9d3e0-4968-4391-a189-261b11f6fda6/fasta/CLASP1.fasta" "/disk1/www/rails/humanrnamap/public/result/16c9d3e0-4968-4391-a189-261b11f6fda6/ct/CLASP1.ct" --SHAPE "CLASP1.dat"

fold - Elapsed time since the previous call: 0.11 seconds
fold - Current memory usage: 174.36 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/16c9d3e0-4968-4391-a189-261b11f6fda6/ct/CLASP1.ct" "/disk1/www/rails/humanrnamap/public/result/16c9d3e0-4968-4391-a189-261b11f6fda6/fold_FE/CLASP1.txt" -sh "CLASP1.dat"

efn2 - Elapsed time since the previous call: 0.41 seconds
efn2 - Current memory usage: 174.36 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/16c9d3e0-4968-4391-a189-261b11f6fda6/ct/CLASP1.ct" 1 "/disk1/www/rails/humanrnamap/public/result/16c9d3e0-4968-4391-a189-261b11f6fda6/fold_dbn/CLASP1_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 174.36 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CCUGCAGAACUUACUGAAGAGCCAAAGAACACUGAGUCGAGUUGAACUGAAAAGGUUGUGUGAGAUCUUCACUCGGAUGUUUGCUGACCCUCAUAGCA', '-structureDBN', '....(((......)))..(((.((..(((((((((((.(((((..((............))..)).))).)))))).)))))..))...)))......', '-o', '/disk1/www/rails/humanrnamap/public/result/16c9d3e0-4968-4391-a189-261b11f6fda6/final_image/CLASP1_fold_1.svg', '-title', 'CLASP1, -17.3 ± 1.2\n kcal/mol, AUC: 0.662', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,4,7,11,12,15,16,19,21,27,33,34,36,37,39,41,42,43,44,48,49,54,55,56,57,58,59,60,61,62,64,66,68,69,73,75,76,78,79,80,81,82,83,85,86,91,94,96', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,2,67,24,90,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '35,71,40,72,77,46,63,20,52,89,28,29,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '65,5,6,70,8,9,10,74,13,14,17,18,84,22,23,87,25,26,88,92,93,95,32,97,98,38,45,47,50,51,53']
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Text: 'CLASP1, -17.3 ± 1.2
 kcal/mol, AUC: 0.662', X: 228.7634651809728, Y: 390.1207745836572, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 599.0269303619456, 390.1207745836572)
Updated viewBox: -0.25 0.0 604.2769303619456 395.1207745836572
Updated SVG: /disk1/www/rails/humanrnamap/public/result/16c9d3e0-4968-4391-a189-261b11f6fda6/final_image/CLASP1_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/16c9d3e0-4968-4391-a189-261b11f6fda6/final_image/CLASP1_fold_final_1.svg
