Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 95% [================================================  ] \                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/20da9367-af25-4fdc-8c95-e3cd5c9cc786/final_image/FLNB_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 159.04 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 159.04 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 159.04 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.72 MB
Based on canonical annotations, the following gene is in your area of interest: FLNB(+)
write fasta - Elapsed time since the previous call: 1.17 seconds
write fasta - Current memory usage: 172.72 MB
Length of region: 94 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.18 seconds
write dat - Current memory usage: 176.10 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/20da9367-af25-4fdc-8c95-e3cd5c9cc786/fasta/FLNB.fasta" "/disk1/www/rails/humanrnamap/public/result/20da9367-af25-4fdc-8c95-e3cd5c9cc786/ct/FLNB.ct" --SHAPE "FLNB.dat"

fold - Elapsed time since the previous call: 0.11 seconds
fold - Current memory usage: 176.10 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/20da9367-af25-4fdc-8c95-e3cd5c9cc786/ct/FLNB.ct" "/disk1/www/rails/humanrnamap/public/result/20da9367-af25-4fdc-8c95-e3cd5c9cc786/fold_FE/FLNB.txt" -sh "FLNB.dat"

efn2 - Elapsed time since the previous call: 0.42 seconds
efn2 - Current memory usage: 176.10 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/20da9367-af25-4fdc-8c95-e3cd5c9cc786/ct/FLNB.ct" 1 "/disk1/www/rails/humanrnamap/public/result/20da9367-af25-4fdc-8c95-e3cd5c9cc786/fold_dbn/FLNB_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.10 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CAGCCCGUACAUGGCCUUCAUCCACCCAGCCACGGGAGGCUACAACCCUGAUCUGGUUCGAGCAUACGGGCCAGGUUUGGAGAAAUCUGGAUGC', '-structureDBN', '.((((.......))).).((((((...((((......)))).....((.(((((((((((......))))))))))).)).......)))))).', '-o', '/disk1/www/rails/humanrnamap/public/result/20da9367-af25-4fdc-8c95-e3cd5c9cc786/final_image/FLNB_fold_1.svg', '-title', 'FLNB, -29.9 ± 0.9\n kcal/mol, AUC: 0.865', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,7,8,12,13,14,17,18,21,29,34,35,36,38,39,41,49,50,52,54,55,56,57,58,60,62,65,68,69,70,74,75,76,77,78,79,80,82,86,88,89,90,92,93', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '48,71,72,73,91,59', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '67,4,15,16,19,20,51,83,85,24,87,28,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,2,66,5,6,9,10,11,81,84,22,23,25,26,27,30,94,32,33,37,40,42,43,44,45,46,47,53,61,63']
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Text: 'G', X: 88.37335966425488, Y: 346.77789178227823, Width: 10.5, Height: 8
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Text: 'C', X: 68.37335966425488, Y: 346.77789178227823, Width: 10.5, Height: 8
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Text: 'C', X: 48.37335966425488, Y: 346.77789178227823, Width: 10.5, Height: 8
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Text: 'G', X: 68.37335966425488, Y: 314.27789178227823, Width: 10.5, Height: 8
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Text: 'C', X: 88.37335966425488, Y: 314.27789178227823, Width: 10.5, Height: 8
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Text: 'U', X: 108.37335966425488, Y: 314.27789178227823, Width: 10.5, Height: 8
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Text: 'G', X: 273.26963897218104, Y: 185.11854272281823, Width: 10.5, Height: 8
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Text: '40', X: 84.62335966425488, Y: 294.27789178227823, Width: 18.0, Height: 8
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Text: '50', X: 194.27684484805505, Y: 211.47702958324857, Width: 18.0, Height: 8
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Text: '60', X: 291.9716650676313, Y: 39.022886813849254, Width: 18.0, Height: 8
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Text: '70', X: 326.3290611606799, Y: 125.34656307843238, Width: 18.0, Height: 8
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Text: '94', X: 202.30151618487454, Y: 514.4560483028979, Width: 18.0, Height: 8
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Text: 'FLNB, -29.9 ± 0.9
 kcal/mol, AUC: 0.865', X: 118.01338026009182, Y: 527.2560483028979, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 373.77676052018364, 527.2560483028979)
Updated viewBox: -0.25 0.0 379.02676052018364 532.2560483028979
Updated SVG: /disk1/www/rails/humanrnamap/public/result/20da9367-af25-4fdc-8c95-e3cd5c9cc786/final_image/FLNB_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/20da9367-af25-4fdc-8c95-e3cd5c9cc786/final_image/FLNB_fold_final_1.svg
