Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 94% [================================================  ] -                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/2623f358-a45b-4042-b2b1-87268195e190/final_image/TEX2_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 158.78 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 158.78 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 158.78 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.40 MB
Based on canonical annotations, the following gene is in your area of interest: TEX2(-)
write fasta - Elapsed time since the previous call: 0.62 seconds
write fasta - Current memory usage: 172.40 MB
Length of region: 90 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.19 seconds
write dat - Current memory usage: 176.00 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/2623f358-a45b-4042-b2b1-87268195e190/fasta/TEX2.fasta" "/disk1/www/rails/humanrnamap/public/result/2623f358-a45b-4042-b2b1-87268195e190/ct/TEX2.ct" --SHAPE "TEX2.dat"

fold - Elapsed time since the previous call: 0.10 seconds
fold - Current memory usage: 176.00 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/2623f358-a45b-4042-b2b1-87268195e190/ct/TEX2.ct" "/disk1/www/rails/humanrnamap/public/result/2623f358-a45b-4042-b2b1-87268195e190/fold_FE/TEX2.txt" -sh "TEX2.dat"

efn2 - Elapsed time since the previous call: 0.56 seconds
efn2 - Current memory usage: 176.00 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/2623f358-a45b-4042-b2b1-87268195e190/ct/TEX2.ct" 1 "/disk1/www/rails/humanrnamap/public/result/2623f358-a45b-4042-b2b1-87268195e190/fold_dbn/TEX2_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.00 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AAUAACAACUACAGCAUCAAGGAGGAGGAGUGUGAUUCUGAGGGGGAUGGCUACGGAAGUGAUUCCAACAUCCCCAGAAGUGACCACCCA', '-structureDBN', '..........................((.((((.(((((...(((((((.....((((....))))..))))))))).))).).))))).', '-o', '/disk1/www/rails/humanrnamap/public/result/2623f358-a45b-4042-b2b1-87268195e190/final_image/TEX2_fold_1.svg', '-title', 'TEX2, -27.7 ± 0.9\n kcal/mol, AUC: 0.818', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,10,14,17,21,22,24,25,27,28,30,31,32,33,34,36,37,39,40,42,43,44,45,46,48,49,50,52,55,56,59,60,61,63,64,71,77,80,81,82', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '66,69,7,72,73,74,75,47,57', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,68,6,70,9,15,16,18,83,85,86,23,87,88,26,89,90,29,58', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '1,2,67,4,5,8,11,12,13,76,78,79,19,20,84,35,38,41,51,53,54,62']
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Text: 'TEX2, -27.7 ± 0.9
 kcal/mol, AUC: 0.818', X: 287.5163669989475, Y: 465.87175798140595, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.4522283389142103, 728.4233967554758, 465.87175798140595)
Updated viewBox: -0.25 -4.54777166108579 733.6733967554758 475.41952964249174
Updated SVG: /disk1/www/rails/humanrnamap/public/result/2623f358-a45b-4042-b2b1-87268195e190/final_image/TEX2_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/2623f358-a45b-4042-b2b1-87268195e190/final_image/TEX2_fold_final_1.svg
