Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/27609c28-f7ed-4d61-bd2d-821b627bad91/final_image/MYH10_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 157.14 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 157.14 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 157.14 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 170.71 MB
Based on canonical annotations, the following gene is in your area of interest: MYH10(-)
write fasta - Elapsed time since the previous call: 0.58 seconds
write fasta - Current memory usage: 170.71 MB
Length of region: 93 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.19 seconds
write dat - Current memory usage: 174.32 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/27609c28-f7ed-4d61-bd2d-821b627bad91/fasta/MYH10.fasta" "/disk1/www/rails/humanrnamap/public/result/27609c28-f7ed-4d61-bd2d-821b627bad91/ct/MYH10.ct" --SHAPE "MYH10.dat"

fold - Elapsed time since the previous call: 0.10 seconds
fold - Current memory usage: 174.32 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/27609c28-f7ed-4d61-bd2d-821b627bad91/ct/MYH10.ct" "/disk1/www/rails/humanrnamap/public/result/27609c28-f7ed-4d61-bd2d-821b627bad91/fold_FE/MYH10.txt" -sh "MYH10.dat"

efn2 - Elapsed time since the previous call: 0.42 seconds
efn2 - Current memory usage: 174.32 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/27609c28-f7ed-4d61-bd2d-821b627bad91/ct/MYH10.ct" 1 "/disk1/www/rails/humanrnamap/public/result/27609c28-f7ed-4d61-bd2d-821b627bad91/fold_dbn/MYH10_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 174.32 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGAAGCUCGUGCAUCCAGAGAUGAGAUUUUUGCUCAAUCCAAAGAGAGUGAAAAGAAAUUGAAGAGUCUGGAAGCAGAAAUCCUUCAAUUGCA', '-structureDBN', '.((((....(((.((((((.....(((((((..(((.((......)).)))..)))))))......)))))).)))......)))).......', '-o', '/disk1/www/rails/humanrnamap/public/result/27609c28-f7ed-4d61-bd2d-821b627bad91/final_image/MYH10_fold_1.svg', '-title', 'MYH10, -23.9 ± 1.2\n kcal/mol, AUC: 0.752', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,5,7,9,10,11,14,18,20,22,23,25,27,28,29,30,31,32,34,38,44,46,48,49,50,55,59,60,61,64,66,67,69,70,71,74,77,81,84,85,89,90,91', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '16,33,82,68,56,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,72,75,12,13,76,80,17,19,83,86,87,26,93,35,47,52,53,54,58', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '1,3,4,6,8,73,78,15,79,21,24,88,92,36,37,39,40,41,42,43,45,51,57,62']
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Text: '1', X: 277.2810204426448, Y: 664.5460855849888, Width: 9.0, Height: 8
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Text: '30', X: 96.80794075817272, Y: 205.92898403049003, Width: 18.0, Height: 8
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Text: '40', X: -4.0, Y: 69.33506142352701, Width: 18.0, Height: 8
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Text: '50', X: 109.87887825504163, Y: 94.45579708439516, Width: 18.0, Height: 8
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Text: '60', X: 206.51500410989988, Y: 243.3501329138465, Width: 18.0, Height: 8
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Text: 'MYH10, -23.9 ± 1.2
 kcal/mol, AUC: 0.752', X: 162.0711432139486, Y: 677.3460855849887, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 463.2810204426448, 677.3460855849887)
Updated viewBox: -9.0 0.0 477.2810204426448 682.3460855849887
Updated SVG: /disk1/www/rails/humanrnamap/public/result/27609c28-f7ed-4d61-bd2d-821b627bad91/final_image/MYH10_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/27609c28-f7ed-4d61-bd2d-821b627bad91/final_image/MYH10_fold_final_1.svg
