Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 97% [================================================= ] -                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/2f05a378-da0c-49f2-8092-a6f5ebed6df6/final_image/CLASP1_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 156.16 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 156.16 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 156.16 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 169.63 MB
Based on canonical annotations, the following gene is in your area of interest: CLASP1(-)
write fasta - Elapsed time since the previous call: 1.60 seconds
write fasta - Current memory usage: 170.59 MB
Length of region: 87 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.18 seconds
write dat - Current memory usage: 173.09 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/2f05a378-da0c-49f2-8092-a6f5ebed6df6/fasta/CLASP1.fasta" "/disk1/www/rails/humanrnamap/public/result/2f05a378-da0c-49f2-8092-a6f5ebed6df6/ct/CLASP1.ct" --SHAPE "CLASP1.dat"

fold - Elapsed time since the previous call: 0.09 seconds
fold - Current memory usage: 173.09 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/2f05a378-da0c-49f2-8092-a6f5ebed6df6/ct/CLASP1.ct" "/disk1/www/rails/humanrnamap/public/result/2f05a378-da0c-49f2-8092-a6f5ebed6df6/fold_FE/CLASP1.txt" -sh "CLASP1.dat"

efn2 - Elapsed time since the previous call: 0.49 seconds
efn2 - Current memory usage: 173.09 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/2f05a378-da0c-49f2-8092-a6f5ebed6df6/ct/CLASP1.ct" 1 "/disk1/www/rails/humanrnamap/public/result/2f05a378-da0c-49f2-8092-a6f5ebed6df6/fold_dbn/CLASP1_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 173.09 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CAGACAGCAUAGUGUCUCUGCCUCAGUCAGACCGCUCAUCUUCCAGCUCUCAAGAGAGUCUAAAUCGUCCGCUGUCUGCCAAAAGAA', '-structureDBN', '((((((((..((((((((((...)))..)))).))).........(((((....)))))...........)))))))).........', '-o', '/disk1/www/rails/humanrnamap/public/result/2f05a378-da0c-49f2-8092-a6f5ebed6df6/final_image/CLASP1_fold_1.svg', '-title', 'CLASP1, -19.3 ± 0.8\n kcal/mol, AUC: 0.811', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,7,10,12,13,14,15,17,19,20,23,26,27,30,34,36,39,41,42,46,48,50,54,56,58,59,61,65,67,68,71,73,74,75,77,78,85', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '16,49,11,62,47', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '64,2,4,5,6,72,76,81,18,21,86,87,32,38,55,57', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '1,66,69,70,8,9,79,80,82,83,84,22,24,25,28,29,31,33,35,37,40,43,44,45,51,52,53,60,63']
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Text: 'G', X: 205.19122224870887, Y: 345.4967574842173, Width: 10.5, Height: 8
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Text: '30', X: 11.837763923876551, Y: 300.82257460806926, Width: 18.0, Height: 8
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Text: '40', X: 89.92035803268772, Y: 156.68763462247745, Width: 18.0, Height: 8
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Text: '50', X: 198.82925378273146, Y: 32.16818212556876, Width: 18.0, Height: 8
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Text: 'CLASP1, -19.3 ± 0.8
 kcal/mol, AUC: 0.811', X: 117.72061112435443, Y: 458.2967574842173, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 376.94122224870887, 458.2967574842173)
Updated viewBox: -0.25 0.0 382.19122224870887 463.2967574842173
Updated SVG: /disk1/www/rails/humanrnamap/public/result/2f05a378-da0c-49f2-8092-a6f5ebed6df6/final_image/CLASP1_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/2f05a378-da0c-49f2-8092-a6f5ebed6df6/final_image/CLASP1_fold_final_1.svg
