Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 97% [================================================= ] |                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/3018c36c-630f-492f-9ddc-cb6263650d7d/final_image/ZBTB20_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 159.14 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 159.14 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 159.14 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.84 MB
Based on canonical annotations, the following gene is in your area of interest: ZBTB20(-)
write fasta - Elapsed time since the previous call: 0.56 seconds
write fasta - Current memory usage: 172.84 MB
Length of region: 97 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.19 seconds
write dat - Current memory usage: 176.20 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/3018c36c-630f-492f-9ddc-cb6263650d7d/fasta/ZBTB20.fasta" "/disk1/www/rails/humanrnamap/public/result/3018c36c-630f-492f-9ddc-cb6263650d7d/ct/ZBTB20.ct" --SHAPE "ZBTB20.dat"

fold - Elapsed time since the previous call: 0.11 seconds
fold - Current memory usage: 176.20 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/3018c36c-630f-492f-9ddc-cb6263650d7d/ct/ZBTB20.ct" "/disk1/www/rails/humanrnamap/public/result/3018c36c-630f-492f-9ddc-cb6263650d7d/fold_FE/ZBTB20.txt" -sh "ZBTB20.dat"

efn2 - Elapsed time since the previous call: 0.49 seconds
efn2 - Current memory usage: 176.20 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/3018c36c-630f-492f-9ddc-cb6263650d7d/ct/ZBTB20.ct" 1 "/disk1/www/rails/humanrnamap/public/result/3018c36c-630f-492f-9ddc-cb6263650d7d/fold_dbn/ZBTB20_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.20 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AAAGGAACAGUGUUAGUGAAAAAGGAAAAAUGGGCGAAACCAUCUUGAUCCGAUGCGAAUGCAGUAAUGUUCUAUAUACCAUUUCAUCAGUUAUUUC', '-structureDBN', '...((((((.(((...((.....(((.((((((......)))).))..)))....))...)))....))))))........................', '-o', '/disk1/www/rails/humanrnamap/public/result/3018c36c-630f-492f-9ddc-cb6263650d7d/final_image/ZBTB20_fold_1.svg', '-title', 'ZBTB20, -12.2 ± 1.1\n kcal/mol, AUC: 0.539', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '4,5,10,11,12,13,14,16,17,18,24,25,31,32,33,34,36,43,45,46,47,49,52,54,55,57,60,61,64,65,68,69,70,71,73,75,77,82,83,84,87,90,91,92,94,95,96', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,19,26,37,41,42,28', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '2,3,66,6,7,15,80,20,85,89,93,44,53,59,62,63', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,8,9,72,74,76,78,79,81,21,22,23,86,88,27,29,30,97,35,38,39,40,48,50,51,56,58']
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Text: 'ZBTB20, -12.2 ± 1.1
 kcal/mol, AUC: 0.539', X: 322.47500760463817, Y: 476.2513181239841, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 3.3660381764231033, 786.4500152092763, 476.2513181239841)
Updated viewBox: -0.25 -1.6339618235768967 791.7000152092763 482.885279947561
Updated SVG: /disk1/www/rails/humanrnamap/public/result/3018c36c-630f-492f-9ddc-cb6263650d7d/final_image/ZBTB20_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/3018c36c-630f-492f-9ddc-cb6263650d7d/final_image/ZBTB20_fold_final_1.svg
