Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 95% [================================================  ] \                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/39165866-3ce0-4fc9-b08d-25686a735770/final_image/MYH10_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 158.20 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 158.20 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 158.20 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 171.74 MB
Based on canonical annotations, the following gene is in your area of interest: MYH10(-)
write fasta - Elapsed time since the previous call: 0.59 seconds
write fasta - Current memory usage: 171.74 MB
Length of region: 94 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.19 seconds
write dat - Current memory usage: 175.09 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/39165866-3ce0-4fc9-b08d-25686a735770/fasta/MYH10.fasta" "/disk1/www/rails/humanrnamap/public/result/39165866-3ce0-4fc9-b08d-25686a735770/ct/MYH10.ct" --SHAPE "MYH10.dat"

fold - Elapsed time since the previous call: 0.10 seconds
fold - Current memory usage: 175.09 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/39165866-3ce0-4fc9-b08d-25686a735770/ct/MYH10.ct" "/disk1/www/rails/humanrnamap/public/result/39165866-3ce0-4fc9-b08d-25686a735770/fold_FE/MYH10.txt" -sh "MYH10.dat"

efn2 - Elapsed time since the previous call: 0.40 seconds
efn2 - Current memory usage: 175.09 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/39165866-3ce0-4fc9-b08d-25686a735770/ct/MYH10.ct" 1 "/disk1/www/rails/humanrnamap/public/result/39165866-3ce0-4fc9-b08d-25686a735770/fold_dbn/MYH10_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 175.09 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AUUGAAAGUCUGGAAGAAGCCAAGAAGAAGCUUCUGAAGGACGCGGAGGCCCUGAGCCAGCGCCUGGAGGAGAAGGCACUGGCGUAUGACAAAC', '-structureDBN', '.......((((...((((((.........))))))...))))((....)).....(((((.((((........)))).)))))...........', '-o', '/disk1/www/rails/humanrnamap/public/result/39165866-3ce0-4fc9-b08d-25686a735770/final_image/MYH10_fold_1.svg', '-title', 'MYH10, -38.6 ± 0.9\n kcal/mol, AUC: 0.938', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,8,9,11,12,13,16,19,24,27,30,32,33,35,36,39,40,43,45,46,48,49,53,54,56,60,62,65,66,67,69,70,72,75,76,80,81,82,84,85,87,88', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '64,74,77,15,79,18,83,20,34,41,42,50,57,58,59,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '17,51,10,91,92,61,78', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '1,68,5,6,7,71,73,14,21,22,23,86,25,26,89,28,29,90,31,93,94,37,38,44,47,52,55']
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Text: '20', X: 104.22013912900456, Y: 81.27767628248068, Width: 18.0, Height: 8
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Text: '30', X: 175.2798608709954, Y: 81.27767628248083, Width: 18.0, Height: 8
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Text: '40', X: 176.0, Y: 254.20800217409308, Width: 18.0, Height: 8
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Text: '50', X: 220.14213562373095, Y: 308.350137797824, Width: 18.0, Height: 8
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Text: '60', X: 291.0, Y: 214.2080021740931, Width: 18.0, Height: 8
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Text: '70', X: 341.67024523321106, Y: 46.842492750994325, Width: 18.0, Height: 8
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Text: '80', X: 363.5, Y: 234.2080021740931, Width: 18.0, Height: 8
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Text: '90', X: 466.0, Y: 314.2080021740931, Width: 18.0, Height: 8
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Text: '94', X: 536.0, Y: 314.2080021740931, Width: 18.0, Height: 8
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Text: 'MYH10, -38.6 ± 0.9
 kcal/mol, AUC: 0.938', X: 206.25, Y: 327.0080021740931, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 554.0, 327.0080021740931)
Updated viewBox: -0.25 0.0 559.25 332.0080021740931
Updated SVG: /disk1/www/rails/humanrnamap/public/result/39165866-3ce0-4fc9-b08d-25686a735770/final_image/MYH10_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/39165866-3ce0-4fc9-b08d-25686a735770/final_image/MYH10_fold_final_1.svg
