Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 98% [==================================================] |                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/3b0c2bbc-91a7-449e-9b36-3321209b0ddb/final_image/FLNB_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 156.44 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 156.44 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 156.44 MB
read annotations - Elapsed time since the previous call: 0.10 seconds
read annotations - Current memory usage: 169.99 MB
Based on canonical annotations, the following gene is in your area of interest: FLNB(+)
write fasta - Elapsed time since the previous call: 0.67 seconds
write fasta - Current memory usage: 169.99 MB
Length of region: 96 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.20 seconds
write dat - Current memory usage: 172.98 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/3b0c2bbc-91a7-449e-9b36-3321209b0ddb/fasta/FLNB.fasta" "/disk1/www/rails/humanrnamap/public/result/3b0c2bbc-91a7-449e-9b36-3321209b0ddb/ct/FLNB.ct" --SHAPE "FLNB.dat"

fold - Elapsed time since the previous call: 0.15 seconds
fold - Current memory usage: 172.98 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/3b0c2bbc-91a7-449e-9b36-3321209b0ddb/ct/FLNB.ct" "/disk1/www/rails/humanrnamap/public/result/3b0c2bbc-91a7-449e-9b36-3321209b0ddb/fold_FE/FLNB.txt" -sh "FLNB.dat"

efn2 - Elapsed time since the previous call: 0.55 seconds
efn2 - Current memory usage: 172.98 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/3b0c2bbc-91a7-449e-9b36-3321209b0ddb/ct/FLNB.ct" 1 "/disk1/www/rails/humanrnamap/public/result/3b0c2bbc-91a7-449e-9b36-3321209b0ddb/fold_dbn/FLNB_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 172.98 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AUGGCACGUAUGCUGUCACCUACAUCCCCGACAAGACUGGGCGCUAUAUGAUUGGAGUCACCUACGGGGGUGACGACAUCCCACUUUCUCCUUAUC', '-structureDBN', '..((((....)))).(((........((((.......)))).......))).((..(((((((....)))))))..))..................', '-o', '/disk1/www/rails/humanrnamap/public/result/3b0c2bbc-91a7-449e-9b36-3321209b0ddb/final_image/FLNB_fold_1.svg', '-title', 'FLNB, -25.2 ± 1.1\n kcal/mol, AUC: 0.834', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,8,9,11,12,14,15,16,21,25,30,35,38,39,40,41,43,45,47,49,50,52,53,54,55,57,58,63,66,67,68,69,70,71,72,75,79,85,86,87,89,92,93,95', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,5,59,74,80,17,94,26,27,60,61,62', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '33,73,13,77,78,83,20,91,28,29', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,65,6,7,10,76,81,18,19,82,84,22,23,24,88,90,31,32,96,34,36,37,42,44,46,48,51,56']
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Text: 'C', X: 174.75, Y: 107.9787562691273, Width: 10.5, Height: 8
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Text: 'U', X: 174.75, Y: 87.9787562691273, Width: 10.5, Height: 8
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Text: 'G', X: 207.25, Y: 107.9787562691273, Width: 10.5, Height: 8
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Text: 'G', X: 207.25, Y: 127.9787562691273, Width: 10.5, Height: 8
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Text: 'U', X: 207.25, Y: 147.9787562691273, Width: 10.5, Height: 8
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Text: 'G', X: 207.25, Y: 167.9787562691273, Width: 10.5, Height: 8
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Text: 'A', X: 207.25, Y: 187.9787562691273, Width: 10.5, Height: 8
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Text: 'C', X: 207.25, Y: 207.9787562691273, Width: 10.5, Height: 8
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Text: 'C', X: 207.25, Y: 253.6576382352604, Width: 10.5, Height: 8
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Text: 'A', X: 207.25, Y: 273.6576382352604, Width: 10.5, Height: 8
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Text: 'U', X: 224.75, Y: 273.6576382352604, Width: 10.5, Height: 8
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Text: 'C', X: 242.25, Y: 273.65763823526044, Width: 10.5, Height: 8
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Text: 'C', X: 259.75, Y: 273.65763823526044, Width: 10.5, Height: 8
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Text: 'C', X: 277.25, Y: 273.65763823526044, Width: 10.5, Height: 8
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Text: 'C', X: 522.25, Y: 273.65763823526044, Width: 10.5, Height: 8
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Text: '1', X: 5.5, Y: 293.6576382352604, Width: 9.0, Height: 8
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Text: '10', X: 91.47763763996942, Y: 191.77590976203174, Width: 18.0, Height: 8
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Text: '20', X: 59.15125329278038, Y: 227.09891351316995, Width: 18.0, Height: 8
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Text: '30', X: 101.13599816310447, Y: 61.35859523339087, Width: 18.0, Height: 8
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Text: '40', X: 167.00145393061595, Y: 108.60471236263768, Width: 18.0, Height: 8
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Text: '50', X: 156.0, Y: 253.6576382352604, Width: 18.0, Height: 8
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Text: '60', X: 151.0, Y: 147.9787562691273, Width: 18.0, Height: 8
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Text: '70', X: 223.5, Y: 127.9787562691273, Width: 18.0, Height: 8
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Text: '80', X: 238.5, Y: 293.65763823526044, Width: 18.0, Height: 8
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Text: '90', X: 413.5, Y: 293.65763823526044, Width: 18.0, Height: 8
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Text: '96', X: 518.5, Y: 293.65763823526044, Width: 18.0, Height: 8
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Text: 'FLNB, -25.2 ± 1.1
 kcal/mol, AUC: 0.834', X: 197.5, Y: 306.45763823526045, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 536.5, 306.45763823526045)
Updated viewBox: -0.25 0.0 541.75 311.45763823526045
Updated SVG: /disk1/www/rails/humanrnamap/public/result/3b0c2bbc-91a7-449e-9b36-3321209b0ddb/final_image/FLNB_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/3b0c2bbc-91a7-449e-9b36-3321209b0ddb/final_image/FLNB_fold_final_1.svg
