Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 99% [==================================================] -                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/3bc9c77e-90c5-420e-85e3-d86287338b56/final_image/ZBTB20_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 159.19 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 159.19 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 159.19 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.81 MB
Based on canonical annotations, the following gene is in your area of interest: ZBTB20(-)
write fasta - Elapsed time since the previous call: 0.57 seconds
write fasta - Current memory usage: 172.81 MB
Length of region: 106 nt.
98.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.19 seconds
write dat - Current memory usage: 176.35 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/3bc9c77e-90c5-420e-85e3-d86287338b56/fasta/ZBTB20.fasta" "/disk1/www/rails/humanrnamap/public/result/3bc9c77e-90c5-420e-85e3-d86287338b56/ct/ZBTB20.ct" --SHAPE "ZBTB20.dat"

fold - Elapsed time since the previous call: 0.14 seconds
fold - Current memory usage: 176.35 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/3bc9c77e-90c5-420e-85e3-d86287338b56/ct/ZBTB20.ct" "/disk1/www/rails/humanrnamap/public/result/3bc9c77e-90c5-420e-85e3-d86287338b56/fold_FE/ZBTB20.txt" -sh "ZBTB20.dat"

efn2 - Elapsed time since the previous call: 0.41 seconds
efn2 - Current memory usage: 176.35 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/3bc9c77e-90c5-420e-85e3-d86287338b56/ct/ZBTB20.ct" 1 "/disk1/www/rails/humanrnamap/public/result/3bc9c77e-90c5-420e-85e3-d86287338b56/fold_dbn/ZBTB20_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.35 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CAUAUUCCUACUGUACAUUUAUCCUUCCCAAAUAUGUCACAUUCUAAAAUAGUUGACAAAUUAUUUUGUGGAAAGAGGAAGAAGCUGGAUUGGAGUGGGAGAUCUA', '-structureDBN', '....((((((((.((.((((((((((((((((((((((((...........).)))))...)).)))).)))...))))......))))))).)))))))).....', '-o', '/disk1/www/rails/humanrnamap/public/result/3bc9c77e-90c5-420e-85e3-d86287338b56/final_image/ZBTB20_fold_1.svg', '-title', 'ZBTB20, -25.4 ± 1.8\n kcal/mol, AUC: 0.754', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,5,6,9,12,13,14,18,19,20,22,25,26,33,35,36,37,42,43,45,50,52,53,54,55,61,62,64,65,66,67,68,69,70,71,75,77,78,81,84,86,87,88,90,91,92,93,95,96,97,98,99,101,103,104,105', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '38,39,8,72,106,23,24,57,56,27,29,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,2,79,83,85,89,28,31,32,100,40,47,49,58,60,63', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '4,7,73,10,11,74,76,15,16,17,80,82,21,94,34,102,41,44,46,48,51,59']
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Text: '50', X: 166.97772784600025, Y: 334.2207185601691, Width: 18.0, Height: 8
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Text: '60', X: -4.0, Y: 244.19784178026967, Width: 18.0, Height: 8
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Text: 'ZBTB20, -25.4 ± 1.8
 kcal/mol, AUC: 0.754', X: 76.11075934884968, Y: 429.98713053672856, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 288.98902373006973, 429.98713053672856)
Updated viewBox: -9.0 0.0 302.98902373006973 434.98713053672856
Updated SVG: /disk1/www/rails/humanrnamap/public/result/3bc9c77e-90c5-420e-85e3-d86287338b56/final_image/ZBTB20_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/3bc9c77e-90c5-420e-85e3-d86287338b56/final_image/ZBTB20_fold_final_1.svg
