Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_6.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 158.98 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 158.98 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 158.98 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.51 MB
Based on canonical annotations, the following gene is in your area of interest: HTT(+)
write fasta - Elapsed time since the previous call: 0.64 seconds
write fasta - Current memory usage: 172.51 MB
Length of region: 109 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.17 seconds
write dat - Current memory usage: 176.07 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/fasta/HTT.fasta" "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/ct/HTT.ct" --SHAPE "HTT.dat"

fold - Elapsed time since the previous call: 0.14 seconds
fold - Current memory usage: 176.07 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/ct/HTT.ct" "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/fold_FE/HTT.txt" -sh "HTT.dat"

efn2 - Elapsed time since the previous call: 0.62 seconds
efn2 - Current memory usage: 176.07 MB
This region has 9 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/ct/HTT.ct" 1 "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/fold_dbn/HTT_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.07 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/ct/HTT.ct" 2 "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/fold_dbn/HTT_temp2.dbn"

ct2dot - Elapsed time since the previous call: 0.03 seconds
ct2dot - Current memory usage: 176.07 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/ct/HTT.ct" 3 "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/fold_dbn/HTT_temp3.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.07 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/ct/HTT.ct" 4 "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/fold_dbn/HTT_temp4.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.07 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/ct/HTT.ct" 5 "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/fold_dbn/HTT_temp5.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.07 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/ct/HTT.ct" 6 "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/fold_dbn/HTT_temp6.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.07 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/ct/HTT.ct" 7 "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/fold_dbn/HTT_temp7.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 176.07 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/ct/HTT.ct" 8 "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/fold_dbn/HTT_temp8.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.07 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/ct/HTT.ct" 9 "/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/fold_dbn/HTT_temp9.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.07 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGAGGAGGAAGUAGAUCCAAACACACAGAAUCCUAAGUAUAUCACUGCAGCCUGUGAGAUGGUGGCAGAAAUGGUGGAGUCUCUGCAGUCGGUGUUGGCCUUGGGUCA', '-structureDBN', '..............((((((......((((.(((.......((((((((.(((........))).))))...)))))))...)))).....(((....))).)))))).', '-o', '/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_6.svg', '-title', 'HTT, -25.7 ± 1.5\n kcal/mol, AUC: 0.755', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,8,9,12,13,15,17,29,32,35,38,39,41,43,47,48,51,54,55,56,57,59,61,62,63,64,65,66,69,73,74,75,76,77,78,80,81,83,85,86,89,90,92,93,94,95,96,97,98,99,102,103,104,105,106,107', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '33,67,100,101,70,44,49,19,20,53,84,91', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,68,7,71,79,18,82,22,23,87,30,31,34,37,40,108,109,46,52', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '4,72,10,11,14,16,21,24,25,26,27,28,88,36,42,45,50,58,60']
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Text: 'A', X: 195.09773995258334, Y: 314.8745962982087, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_5.svg


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Text: '109', X: 291.5, Y: 640.5269221372384, Width: 27.0, Height: 8
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Text: 'HTT, -25.7 ± 1.5
 kcal/mol, AUC: 0.755', X: 129.3215011250757, Y: 653.3269221372384, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 396.3930022501514, 653.3269221372384)
Updated viewBox: -0.25 0.0 401.6430022501514 658.3269221372384
Updated SVG: /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_final_6.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_final_6.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGAGGAGGAAGUAGAUCCAAACACACAGAAUCCUAAGUAUAUCACUGCAGCCUGUGAGAUGGUGGCAGAAAUGGUGGAGUCUCUGCAGUCGGUGUUGGCCUUGGGUCA', '-structureDBN', '..............((((((.........................((((.(((........))).)))).....(((((...)))))....(((....))).)))))).', '-o', '/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_5.svg', '-title', 'HTT, -23.1 ± 0.8\n kcal/mol, AUC: 0.816', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,8,9,12,13,15,17,29,32,35,38,39,41,43,47,48,51,54,55,56,57,59,61,62,63,64,65,66,69,73,74,75,76,77,78,80,81,83,85,86,89,90,92,93,94,95,96,97,98,99,102,103,104,105,106,107', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '33,67,100,101,70,44,49,19,20,53,84,91', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,68,7,71,79,18,82,22,23,87,30,31,34,37,40,108,109,46,52', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '4,72,10,11,14,16,21,24,25,26,27,28,88,36,42,45,50,58,60']
Warning: Font Verdana not found. Using default font.
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Text: 'U', X: 137.52709148025198, Y: 278.10149080092526, Width: 10.5, Height: 8
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Text: 'C', X: 145.99243749185075, Y: 245.44858087076676, Width: 10.5, Height: 8
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Text: 'U', X: 153.3391644922396, Y: 230.2264961256305, Width: 10.5, Height: 8
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Text: 'A', X: 162.60655590798052, Y: 216.09137256926186, Width: 10.5, Height: 8
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Text: 'A', X: 173.63661940007538, Y: 203.28418860998687, Width: 10.5, Height: 8
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Text: 'G', X: 186.2413122440684, Y: 192.02328367677006, Width: 10.5, Height: 8
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Text: 'U', X: 200.20574711995368, Y: 182.50063592504085, Width: 10.5, Height: 8
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Text: 'A', X: 215.29185555410635, Y: 174.8785893547725, Width: 10.5, Height: 8
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Text: 'U', X: 231.2424465581496, Y: 169.28708613756072, Width: 10.5, Height: 8
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Text: 'A', X: 247.78559127226947, Y: 165.82145133654075, Width: 10.5, Height: 8
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Text: 'U', X: 264.6392588627054, Y: 164.54076778567975, Width: 10.5, Height: 8
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Text: 'C', X: 281.5161246397083, Y: 165.46686883382853, Width: 10.5, Height: 8
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Text: 'A', X: 298.1284684262135, Y: 168.58396612543157, Width: 10.5, Height: 8
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Text: 'C', X: 314.1930796688591, Y: 173.83891876356387, Width: 10.5, Height: 8
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Text: 'U', X: 323.9100793598391, Y: 156.35807447601604, Width: 10.5, Height: 8
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Text: 'G', X: 333.6270790508191, Y: 138.87723018846822, Width: 10.5, Height: 8
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Text: 'C', X: 343.3440787417991, Y: 121.3963859009204, Width: 10.5, Height: 8
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Text: 'A', X: 345.36575979175655, Y: 104.01362990276328, Width: 10.5, Height: 8
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Text: 'G', X: 359.0617697713768, Y: 93.12020477577192, Width: 10.5, Height: 8
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Text: 'C', X: 368.77870819711353, Y: 75.63932643312438, Width: 10.5, Height: 8
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Text: 'C', X: 378.4956466228502, Y: 58.15844809047695, Width: 10.5, Height: 8
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Text: 'U', X: 374.65090645721284, Y: 41.08600004946743, Width: 10.5, Height: 8
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Text: 'G', X: 380.70752062669726, Y: 24.66747594234289, Width: 10.5, Height: 8
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Text: 'U', X: 394.7181908587479, Y: 14.181693725313835, Width: 10.5, Height: 8
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Text: 'G', X: 412.17826270836485, Y: 13.0, Width: 10.5, Height: 8
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Text: 'A', X: 427.47404397062627, Y: 21.502328188871843, Width: 10.5, Height: 8
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Text: 'G', X: 435.68769646137656, Y: 36.95504386655875, Width: 10.5, Height: 8
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Text: 'A', X: 434.1783996067717, Y: 54.389851925694586, Width: 10.5, Height: 8
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Text: 'U', X: 423.43141647219784, Y: 68.20118287384804, Width: 10.5, Height: 8
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Text: 'G', X: 406.9020739296523, Y: 73.94847303229898, Width: 10.5, Height: 8
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Text: 'G', X: 397.18513550391566, Y: 91.42935137494652, Width: 10.5, Height: 8
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Text: 'U', X: 387.468197078179, Y: 108.91022971759406, Width: 10.5, Height: 8
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Text: 'G', X: 385.44653790836185, Y: 126.29306303673667, Width: 10.5, Height: 8
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Text: 'G', X: 371.75045070906435, Y: 137.1865103987629, Width: 10.5, Height: 8
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Text: 'C', X: 362.03345101808435, Y: 154.66735468631072, Width: 10.5, Height: 8
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Text: 'A', X: 352.31645132710435, Y: 172.14819897385854, Width: 10.5, Height: 8
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Text: 'G', X: 342.59945163612434, Y: 189.62904326140637, Width: 10.5, Height: 8
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Text: 'A', X: 355.9746896836653, Y: 200.914122223098, Width: 10.5, Height: 8
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Text: 'A', X: 367.70561044939427, Y: 213.9000953475192, Width: 10.5, Height: 8
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Text: 'A', X: 377.5778274673566, Y: 228.349639670793, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_4.svg


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Text: 'G', X: 394.4270199378768, Y: 277.7346179048766, Width: 10.5, Height: 8
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Text: 'U', X: 414.4270199378768, Y: 277.7346179048766, Width: 10.5, Height: 8
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Text: 'G', X: 434.4270199378768, Y: 277.7346179048766, Width: 10.5, Height: 8
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Text: 'G', X: 454.4270199378768, Y: 277.7346179048766, Width: 10.5, Height: 8
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Text: 'A', X: 474.4270199378768, Y: 277.7346179048766, Width: 10.5, Height: 8
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Text: 'G', X: 491.9017678247983, Y: 278.6748190434337, Width: 10.5, Height: 8
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Text: 'U', X: 500.3788457833034, Y: 293.9846179048766, Width: 10.5, Height: 8
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Text: 'C', X: 491.9017678247983, Y: 309.2944167663194, Width: 10.5, Height: 8
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Text: 'U', X: 474.4270199378768, Y: 310.2346179048766, Width: 10.5, Height: 8
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Text: 'C', X: 454.4270199378768, Y: 310.2346179048766, Width: 10.5, Height: 8
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Text: 'U', X: 434.4270199378768, Y: 310.2346179048766, Width: 10.5, Height: 8
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Text: 'G', X: 414.4270199378768, Y: 310.2346179048766, Width: 10.5, Height: 8
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Text: 'C', X: 394.4270199378768, Y: 310.2346179048766, Width: 10.5, Height: 8
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Text: 'U', X: 372.5529223487214, Y: 367.49677124751213, Width: 10.5, Height: 8
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Text: 'C', X: 359.53797813873575, Y: 383.4732126856709, Width: 10.5, Height: 8
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Text: 'G', X: 344.1527880711374, Y: 397.1820193587489, Width: 10.5, Height: 8
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Text: 'G', X: 282.25, Y: 462.4116378427534, Width: 10.5, Height: 8
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Text: 'C', X: 282.25, Y: 522.4116378427534, Width: 10.5, Height: 8
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Text: 'A', X: 299.75, Y: 522.4116378427534, Width: 10.5, Height: 8
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Text: '1', X: 5.5, Y: 542.4116378427534, Width: 9.0, Height: 8
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Text: '10', X: 158.5, Y: 542.4116378427534, Width: 18.0, Height: 8
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Text: '20', X: 230.1651038424262, Y: 434.6286777329582, Width: 18.0, Height: 8
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Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Updated SVG: /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_final_4.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_final_4.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGAGGAGGAAGUAGAUCCAAACACACAGAAUCCUAAGUAUAUCACUGCAGCCUGUGAGAUGGUGGCAGAAAUGGUGGAGUCUCUGCAGUCGGUGUUGGCCUUGGGUCA', '-structureDBN', '...(((((((......)))............))))........((((((.(((........))).(((((.((......)).))))).).))))).(((((...)))))', '-o', '/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_2.svg', '-title', 'HTT, -26.2 ± 1.1\n kcal/mol, AUC: 0.824', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,8,9,12,13,15,17,29,32,35,38,39,41,43,47,48,51,54,55,56,57,59,61,62,63,64,65,66,69,73,74,75,76,77,78,80,81,83,85,86,89,90,92,93,94,95,96,97,98,99,102,103,104,105,106,107', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '33,67,100,101,70,44,49,19,20,53,84,91', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,68,7,71,79,18,82,22,23,87,30,31,34,37,40,108,109,46,52', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '4,72,10,11,14,16,21,24,25,26,27,28,88,36,42,45,50,58,60']Output file: /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_2.svg


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Text: 'HTT, -26.2 ± 1.1
 kcal/mol, AUC: 0.824', X: 147.1915799277942, Y: 349.09958586139214, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 432.1331598555884, 349.09958586139214)
Updated viewBox: -0.25 0.0 437.3831598555884 354.09958586139214
Updated SVG: /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_final_2.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_final_2.svg/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_8.svg


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Text: 'A', X: 106.42125718020225, Y: 404.8764830375661, Width: 10.5, Height: 8
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Text: 'G', X: 123.92125718020225, Y: 404.8764830375661, Width: 10.5, Height: 8
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Text: 'G', X: 123.92125718020225, Y: 384.8764830375661, Width: 10.5, Height: 8
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Text: 'A', X: 123.92125718020225, Y: 364.8764830375661, Width: 10.5, Height: 8
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Text: 'G', X: 111.3435076804127, Y: 352.7089157534796, Width: 10.5, Height: 8
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Text: 'G', X: 106.59664871771827, Y: 335.86502053650224, Width: 10.5, Height: 8
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Text: 'A', X: 110.97013692945242, Y: 318.9203435860835, Width: 10.5, Height: 8
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Text: 'A', X: 123.27593967187315, Y: 306.4778078735827, Width: 10.5, Height: 8
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Text: 'G', X: 140.17125718020225, Y: 301.91735588008737, Width: 10.5, Height: 8
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Text: 'U', X: 157.06657468853135, Y: 306.4778078735827, Width: 10.5, Height: 8
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Text: 'A', X: 169.3723774309521, Y: 318.9203435860835, Width: 10.5, Height: 8
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Text: 'G', X: 173.74586564268623, Y: 335.86502053650224, Width: 10.5, Height: 8
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Text: 'A', X: 168.9990066799918, Y: 352.7089157534796, Width: 10.5, Height: 8
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Text: 'U', X: 156.42125718020225, Y: 364.8764830375661, Width: 10.5, Height: 8
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Text: 'C', X: 156.42125718020225, Y: 384.8764830375661, Width: 10.5, Height: 8
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Text: 'C', X: 156.42125718020225, Y: 404.8764830375661, Width: 10.5, Height: 8
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Text: 'A', X: 173.92125718020225, Y: 404.8764830375661, Width: 10.5, Height: 8
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Text: 'A', X: 191.42125718020225, Y: 404.8764830375661, Width: 10.5, Height: 8
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Text: 'A', X: 208.92125718020225, Y: 404.8764830375661, Width: 10.5, Height: 8
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Text: 'C', X: 226.42125718020225, Y: 404.8764830375661, Width: 10.5, Height: 8
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Text: 'A', X: 243.92125718020225, Y: 404.8764830375661, Width: 10.5, Height: 8
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Text: 'C', X: 261.42125718020225, Y: 404.8764830375661, Width: 10.5, Height: 8
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Text: 'A', X: 261.42125718020225, Y: 384.8764830375661, Width: 10.5, Height: 8
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Text: 'C', X: 261.42125718020225, Y: 364.8764830375661, Width: 10.5, Height: 8
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Text: 'A', X: 254.742880028713, Y: 348.70094660748333, Width: 10.5, Height: 8
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Text: 'G', X: 261.42125718020225, Y: 332.52541017740054, Width: 10.5, Height: 8
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Text: 'A', X: 261.42125718020225, Y: 312.52541017740054, Width: 10.5, Height: 8
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Text: 'A', X: 246.14558955669065, Y: 303.98703571335204, Width: 10.5, Height: 8
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Text: 'U', X: 234.77299464721636, Y: 290.6861355612076, Width: 10.5, Height: 8
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Text: 'C', X: 228.71147006848537, Y: 274.26944345793186, Width: 10.5, Height: 8
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Text: 'C', X: 228.71147006848537, Y: 256.7694474627233, Width: 10.5, Height: 8
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Text: 'U', X: 234.77299464721634, Y: 240.35275535944746, Width: 10.5, Height: 8
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Text: 'A', X: 246.1455895566906, Y: 227.05185520730302, Width: 10.5, Height: 8
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Text: 'A', X: 261.42125718020225, Y: 218.51348074325446, Width: 10.5, Height: 8
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Text: 'G', X: 261.42125718020225, Y: 198.51348074325446, Width: 10.5, Height: 8
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Text: 'U', X: 248.91146726867703, Y: 186.27601585943577, Width: 10.5, Height: 8
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Text: 'A', X: 244.3201648416433, Y: 169.38902878545758, Width: 10.5, Height: 8
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Text: 'U', X: 248.91148190138017, Y: 152.5020456898847, Width: 10.5, Height: 8
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Text: 'A', X: 238.78470104948508, Y: 135.25535587480175, Width: 10.5, Height: 8
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Text: 'U', X: 228.65792019759002, Y: 118.00866605971868, Width: 10.5, Height: 8
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Text: 'C', X: 218.53113934569492, Y: 100.7619762446356, Width: 10.5, Height: 8
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Text: 'A', X: 208.40435849379983, Y: 83.51528642955253, Width: 10.5, Height: 8
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Text: 'C', X: 192.93613504681866, Y: 74.66018660684114, Width: 10.5, Height: 8
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Text: 'U', X: 172.93613504681866, Y: 74.66018660684114, Width: 10.5, Height: 8
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Text: 'G', X: 152.93613504681866, Y: 74.66018660684114, Width: 10.5, Height: 8
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Text: 'C', X: 132.93613504681866, Y: 74.66018660684114, Width: 10.5, Height: 8
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Text: 'A', X: 116.7605986167359, Y: 81.3385637583304, Width: 10.5, Height: 8
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Text: 'G', X: 100.58506218665315, Y: 74.66018660684114, Width: 10.5, Height: 8
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Text: 'C', X: 80.58506218665315, Y: 74.66018660684114, Width: 10.5, Height: 8
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Text: 'C', X: 60.58506218665315, Y: 74.66018660684114, Width: 10.5, Height: 8
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Text: 'U', X: 47.53094799847298, Y: 86.31525468112483, Width: 10.5, Height: 8
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Text: 'G', X: 30.23784952668322, Y: 88.99839729738943, Width: 10.5, Height: 8
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Text: 'U', X: 14.265774366107223, Y: 81.84694121354579, Width: 10.5, Height: 8
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Text: 'G', X: 4.75, Y: 67.1601938790414, Width: 10.5, Height: 8
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Text: 'A', X: 4.75, Y: 49.66017933464087, Width: 10.5, Height: 8
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Text: 'G', X: 14.265774366107223, Y: 34.973432000136484, Width: 10.5, Height: 8
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Text: 'A', X: 30.23784952668322, Y: 27.821975916292843, Width: 10.5, Height: 8
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Text: 'U', X: 47.53094799847298, Y: 30.505118532557447, Width: 10.5, Height: 8
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Text: 'G', X: 60.58506218665312, Y: 42.16018660684114, Width: 10.5, Height: 8
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Text: 'G', X: 80.58506218665312, Y: 42.16018660684114, Width: 10.5, Height: 8
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Text: 'U', X: 100.58506218665315, Y: 42.16018660684114, Width: 10.5, Height: 8
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Text: 'G', X: 116.76059861673588, Y: 35.48180945535188, Width: 10.5, Height: 8
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Text: 'G', X: 132.93613504681866, Y: 42.16018660684114, Width: 10.5, Height: 8
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Text: 'C', X: 152.93613504681866, Y: 42.16018660684114, Width: 10.5, Height: 8
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Text: 'A', X: 172.93613504681866, Y: 42.16018660684114, Width: 10.5, Height: 8
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Text: 'G', X: 192.93613504681866, Y: 42.16018660684114, Width: 10.5, Height: 8
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Text: 'A', X: 207.97932577412888, Y: 33.37825862381891, Width: 10.5, Height: 8
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Text: 'A', X: 225.1457480905641, Y: 36.33355745998, Width: 10.5, Height: 8
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Text: 'A', X: 236.38623404795248, Y: 49.640372323010695, Width: 10.5, Height: 8
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Text: 'U', X: 236.43022944330983, Y: 67.0592675452229, Width: 10.5, Height: 8
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Text: 'G', X: 246.55701029520492, Y: 84.30595736030608, Width: 10.5, Height: 8
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Text: 'G', X: 256.6837911471, Y: 101.55264717538915, Width: 10.5, Height: 8
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Text: 'U', X: 266.8105719989951, Y: 118.79933699047223, Width: 10.5, Height: 8
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Text: 'G', X: 276.9373528508902, Y: 136.0460268055553, Width: 10.5, Height: 8
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Text: 'G', X: 293.9212723221302, Y: 140.26461417509444, Width: 10.5, Height: 8
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Text: 'A', X: 306.4310500182654, Y: 152.50207559457505, Width: 10.5, Height: 8
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Text: 'G', X: 311.0223495187631, Y: 169.38905190464112, Width: 10.5, Height: 8
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Text: 'U', X: 306.43104123864873, Y: 186.27602582766687, Width: 10.5, Height: 8
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Text: 'C', X: 293.92125718020225, Y: 198.51348074325446, Width: 10.5, Height: 8
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Text: 'U', X: 293.92125718020225, Y: 218.51348074325446, Width: 10.5, Height: 8
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Text: 'C', X: 309.19692480371384, Y: 227.05185520730296, Width: 10.5, Height: 8
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Text: 'U', X: 320.56951971318813, Y: 240.3527553594474, Width: 10.5, Height: 8
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Text: 'G', X: 326.6310442919191, Y: 256.7694474627232, Width: 10.5, Height: 8
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Text: 'C', X: 326.6310442919191, Y: 274.26944345793186, Width: 10.5, Height: 8
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Text: 'A', X: 320.56951971318813, Y: 290.6861355612076, Width: 10.5, Height: 8
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Text: 'G', X: 309.19692480371384, Y: 303.98703571335204, Width: 10.5, Height: 8
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Text: 'U', X: 293.92125718020225, Y: 312.52541017740054, Width: 10.5, Height: 8
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Text: 'C', X: 293.92125718020225, Y: 332.52541017740054, Width: 10.5, Height: 8
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Text: 'G', X: 300.5996343316915, Y: 348.70094660748333, Width: 10.5, Height: 8
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Text: 'G', X: 293.92125718020225, Y: 364.8764830375661, Width: 10.5, Height: 8
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Text: 'U', X: 293.92125718020225, Y: 384.8764830375661, Width: 10.5, Height: 8
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Text: 'G', X: 293.92125718020225, Y: 404.8764830375661, Width: 10.5, Height: 8
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Text: 'U', X: 311.42125718020225, Y: 404.8764830375661, Width: 10.5, Height: 8
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Text: 'U', X: 328.92125718020225, Y: 404.8764830375661, Width: 10.5, Height: 8
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Text: 'G', X: 328.92125718020225, Y: 384.8764830375661, Width: 10.5, Height: 8
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Text: 'G', X: 328.92125718020225, Y: 364.8764830375661, Width: 10.5, Height: 8
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Text: 'C', X: 328.92125718020225, Y: 344.8764830375661, Width: 10.5, Height: 8
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Text: 'C', X: 328.92125718020225, Y: 324.8764830375661, Width: 10.5, Height: 8
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Text: 'U', X: 329.8614583187594, Y: 307.40173515064464, Width: 10.5, Height: 8
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Text: 'U', X: 345.17125718020225, Y: 298.92465719213953, Width: 10.5, Height: 8
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Text: 'G', X: 360.4810560416451, Y: 307.40173515064464, Width: 10.5, Height: 8
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Text: 'G', X: 361.42125718020225, Y: 324.8764830375661, Width: 10.5, Height: 8
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Text: 'G', X: 361.42125718020225, Y: 344.8764830375661, Width: 10.5, Height: 8
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Text: 'U', X: 361.42125718020225, Y: 364.8764830375661, Width: 10.5, Height: 8
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Text: 'C', X: 361.42125718020225, Y: 384.8764830375661, Width: 10.5, Height: 8
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Text: 'A', X: 361.42125718020225, Y: 404.8764830375661, Width: 10.5, Height: 8
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Text: '1', X: 54.67125718020225, Y: 424.8764830375661, Width: 9.0, Height: 8
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Text: '10', X: 89.82643441487578, Y: 309.048205376232, Width: 18.0, Height: 8
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Text: '20', X: 170.17125718020225, Y: 424.8764830375661, Width: 18.0, Height: 8
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Text: '30', X: 237.69683156510348, Y: 313.53650925607064, Width: 18.0, Height: 8
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Text: '40', X: 220.57016484164518, Y: 169.38902012038028, Width: 18.0, Height: 8
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Text: '50', X: 113.0105986167359, Y: 101.3385637583304, Width: 18.0, Height: 8
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Text: '60', X: 23.825281072369698, Y: 8.0, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_3.svg


Text: '70', X: 200.66916367680292, Y: 13.697678199431948, Width: 18.0, Height: 8
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Text: '80', X: 327.27234951876244, Y: 169.38905710368755, Width: 18.0, Height: 8
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Text: '90', X: 310.145682795301, Y: 313.53650925607064, Width: 18.0, Height: 8
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Text: '100', X: 300.67125718020225, Y: 344.8764830375661, Width: 27.0, Height: 8
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Text: '109', X: 353.17125718020225, Y: 424.8764830375661, Width: 27.0, Height: 8
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Text: 'HTT, -25.7 ± 1.1
 kcal/mol, AUC: 0.696', X: 117.08562859010112, Y: 437.67648303756613, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 380.17125718020225, 437.67648303756613)
Updated viewBox: -0.25 -5.0 385.42125718020225 447.67648303756613
Updated SVG: /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_final_8.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_final_8.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGAGGAGGAAGUAGAUCCAAACACACAGAAUCCUAAGUAUAUCACUGCAGCCUGUGAGAUGGUGGCAGAAAUGGUGGAGUCUCUGCAGUCGGUGUUGGCCUUGGGUCA', '-structureDBN', '..............((((((.........................((((.(((........))).))))....(((.((....(((....)))..)).))).)))))).', '-o', '/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_3.svg', '-title', 'HTT, -22.4 ± 0.8\n kcal/mol, AUC: 0.822', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,8,9,12,13,15,17,29,32,35,38,39,41,43,47,48,51,54,55,56,57,59,61,62,63,64,65,66,69,73,74,75,76,77,78,80,81,83,85,86,89,90,92,93,94,95,96,97,98,99,102,103,104,105,106,107', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '33,67,100,101,70,44,49,19,20,53,84,91', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,68,7,71,79,18,82,22,23,87,30,31,34,37,40,108,109,46,52', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '4,72,10,11,14,16,21,24,25,26,27,28,88,36,42,45,50,58,60']
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Text: 'G', X: 22.25, Y: 337.4371205017942, Width: 10.5, Height: 8
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Text: 'G', X: 39.75, Y: 337.4371205017942, Width: 10.5, Height: 8
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Text: 'A', X: 57.25, Y: 337.4371205017942, Width: 10.5, Height: 8
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Text: 'G', X: 74.75, Y: 337.4371205017942, Width: 10.5, Height: 8
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Text: 'G', X: 92.25, Y: 337.4371205017942, Width: 10.5, Height: 8
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Text: 'A', X: 109.75, Y: 337.4371205017942, Width: 10.5, Height: 8
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Text: 'G', X: 127.25, Y: 337.4371205017942, Width: 10.5, Height: 8
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Text: 'G', X: 144.75, Y: 337.4371205017942, Width: 10.5, Height: 8
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Text: 'A', X: 162.25, Y: 337.4371205017942, Width: 10.5, Height: 8
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Text: 'A', X: 179.75, Y: 337.4371205017942, Width: 10.5, Height: 8
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Text: 'G', X: 197.25, Y: 337.4371205017942, Width: 10.5, Height: 8
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Text: 'U', X: 214.75, Y: 337.4371205017942, Width: 10.5, Height: 8
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Text: 'A', X: 232.25, Y: 337.4371205017942, Width: 10.5, Height: 8
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Text: 'G', X: 249.75, Y: 337.4371205017942, Width: 10.5, Height: 8
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Text: 'A', X: 249.75, Y: 317.43712050179425, Width: 10.5, Height: 8
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Text: 'U', X: 249.75, Y: 297.43712050179425, Width: 10.5, Height: 8
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Text: 'C', X: 249.75, Y: 277.43712050179425, Width: 10.5, Height: 8
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Text: 'C', X: 249.75, Y: 257.43712050179425, Width: 10.5, Height: 8
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Text: 'A', X: 249.75, Y: 237.43712050179425, Width: 10.5, Height: 8
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Text: 'A', X: 232.72299897043544, Y: 233.39586811338768, Width: 10.5, Height: 8
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Text: 'G', X: 550.740989448519, Y: 104.39211236846137, Width: 10.5, Height: 8
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Text: 'A', X: 536.2628998652243, Y: 114.22244456388222, Width: 10.5, Height: 8
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Text: 'U', X: 518.7669563084438, Y: 114.59989404683614, Width: 10.5, Height: 8
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Text: 'G', X: 503.8783843103739, Y: 105.40310477489317, Width: 10.5, Height: 8
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Text: 'G', X: 484.18559588547816, Y: 108.89510764606797, Width: 10.5, Height: 8
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Text: 'U', X: 464.4928074605824, Y: 112.38711051724266, Width: 10.5, Height: 8
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Text: 'G', X: 449.7317426797046, Y: 121.78716192852386, Width: 10.5, Height: 8
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Text: 'G', X: 432.6385998281862, Y: 118.0355666068528, Width: 10.5, Height: 8
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Text: 'C', X: 412.94579916497526, Y: 121.52750046061311, Width: 10.5, Height: 8
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Text: 'A', X: 393.2529985017643, Y: 125.01943431437343, Width: 10.5, Height: 8
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Text: 'G', X: 373.56019783855334, Y: 128.5113681681338, Width: 10.5, Height: 8
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Text: 'A', X: 372.55387894436166, Y: 145.98241056070992, Width: 10.5, Height: 8
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Text: 'G', X: 341.70560083087105, Y: 207.52954285525612, Width: 10.5, Height: 8
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Text: 'G', X: 353.47065876192346, Y: 223.70308334208158, Width: 10.5, Height: 8
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Text: 'U', X: 365.2357166929758, Y: 239.8766238289071, Width: 10.5, Height: 8
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Text: 'G', X: 383.77310509100965, Y: 344.44740956149565, Width: 10.5, Height: 8
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Text: 'U', X: 369.7495196790611, Y: 301.32992426220505, Width: 10.5, Height: 8
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Text: 'U', X: 357.98440506461014, Y: 285.1564250085237, Width: 10.5, Height: 8
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Text: 'U', X: 282.25, Y: 237.43712050179425, Width: 10.5, Height: 8
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Text: 'G', X: 282.25, Y: 257.43712050179425, Width: 10.5, Height: 8
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Text: 'G', X: 282.25, Y: 277.43712050179425, Width: 10.5, Height: 8
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Text: 'G', X: 282.25, Y: 297.43712050179425, Width: 10.5, Height: 8
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Text: 'U', X: 282.25, Y: 317.43712050179425, Width: 10.5, Height: 8
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Text: 'C', X: 282.25, Y: 337.43712050179425, Width: 10.5, Height: 8
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Text: 'A', X: 299.75, Y: 337.43712050179425, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_1.svg


Text: '1', X: 5.5, Y: 357.4371205017942, Width: 9.0, Height: 8
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Text: '10', X: 158.5, Y: 357.4371205017942, Width: 18.0, Height: 8
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Text: '20', X: 229.81796034805186, Y: 249.19048566683435, Width: 18.0, Height: 8
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Text: '30', X: 137.4396322805654, Y: 104.58890750428765, Width: 18.0, Height: 8
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Text: '40', X: 295.8747806511166, Y: 8.0, Width: 18.0, Height: 8
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Text: '50', X: 434.4832575556471, Y: 56.94198533708641, Width: 18.0, Height: 8
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Text: '60', X: 538.5954895677067, Y: 133.27505862367082, Width: 18.0, Height: 8
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Text: '70', X: 388.6111122854384, Y: 148.75252019250013, Width: 18.0, Height: 8
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Text: '80', X: 418.5405047123722, Y: 266.84099635272514, Width: 18.0, Height: 8
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Text: '90', X: 357.0454674510402, Y: 406.32913803472434, Width: 18.0, Height: 8
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Text: '100', X: 302.7651149840066, Y: 254.58636041109398, Width: 27.0, Height: 8
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Text: '109', X: 291.5, Y: 357.43712050179425, Width: 27.0, Height: 8
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Text: 'HTT, -22.4 ± 0.8
 kcal/mol, AUC: 0.822', X: 215.1481439100217, Y: 432.9550411756206, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 568.0462878200434, 432.9550411756206)
Updated viewBox: -0.25 -5.0 573.2962878200434 442.9550411756206
Updated SVG: /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_final_3.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_final_3.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGAGGAGGAAGUAGAUCCAAACACACAGAAUCCUAAGUAUAUCACUGCAGCCUGUGAGAUGGUGGCAGAAAUGGUGGAGUCUCUGCAGUCGGUGUUGGCCUUGGGUCA', '-structureDBN', '....(((.........))).........((..((((((.......((((.(((........))).)))).....(((((...))))).((((....)))))))))))).', '-o', '/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_1.svg', '-title', 'HTT, -23.2 ± 0.9\n kcal/mol, AUC: 0.847', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,8,9,12,13,15,17,29,32,35,38,39,41,43,47,48,51,54,55,56,57,59,61,62,63,64,65,66,69,73,74,75,76,77,78,80,81,83,85,86,89,90,92,93,94,95,96,97,98,99,102,103,104,105,106,107', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '33,67,100,101,70,44,49,19,20,53,84,91', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,68,7,71,79,18,82,22,23,87,30,31,34,37,40,108,109,46,52', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '4,72,10,11,14,16,21,24,25,26,27,28,88,36,42,45,50,58,60']
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Text: 'G', X: 91.0, Y: 329.9194538559083, Width: 10.5, Height: 8
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Text: 'C', X: 107.25, Y: 432.878581013387, Width: 10.5, Height: 8
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Text: 'A', X: 142.25, Y: 432.878581013387, Width: 10.5, Height: 8
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Text: 'C', X: 177.25, Y: 432.878581013387, Width: 10.5, Height: 8
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Text: 'A', X: 194.75, Y: 432.878581013387, Width: 10.5, Height: 8
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Text: 'C', X: 212.25, Y: 432.878581013387, Width: 10.5, Height: 8
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Text: 'A', X: 229.75, Y: 432.878581013387, Width: 10.5, Height: 8
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Text: 'C', X: 247.25, Y: 432.8785810133871, Width: 10.5, Height: 8
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Text: 'A', X: 264.75, Y: 432.8785810133871, Width: 10.5, Height: 8
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Text: 'G', X: 282.25, Y: 432.8785810133871, Width: 10.5, Height: 8
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Text: 'A', X: 282.25, Y: 412.878581013387, Width: 10.5, Height: 8
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Text: 'A', X: 275.5716295660874, Y: 396.6854933378452, Width: 10.5, Height: 8
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Text: 'U', X: 282.27478317994087, Y: 380.5026489726099, Width: 10.5, Height: 8
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Text: 'G', X: 411.35723840859566, Y: 161.18613504681866, Width: 10.5, Height: 8
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Text: 'C', X: 411.35723840859566, Y: 141.18613504681866, Width: 10.5, Height: 8
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Text: 'C', X: 411.35723840859566, Y: 88.83506218665309, Width: 10.5, Height: 8
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Text: 'C', X: 411.35723840859566, Y: 68.83506218665309, Width: 10.5, Height: 8
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Text: 'G', X: 451.0439930153003, Y: 22.515774366107166, Width: 10.5, Height: 8
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Text: 'A', X: 458.19544909914396, Y: 38.487849526683135, Width: 10.5, Height: 8
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Text: 'U', X: 455.51230648287935, Y: 55.780947998472925, Width: 10.5, Height: 8
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Text: 'G', X: 443.85723840859566, Y: 68.83506218665309, Width: 10.5, Height: 8
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Text: 'G', X: 443.85723840859566, Y: 88.83506218665309, Width: 10.5, Height: 8
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Text: 'U', X: 443.85723840859566, Y: 108.83506218665309, Width: 10.5, Height: 8
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Text: 'G', X: 450.5356155600849, Y: 125.01059861673582, Width: 10.5, Height: 8
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Text: 'G', X: 443.85723840859566, Y: 141.18613504681866, Width: 10.5, Height: 8
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Text: 'C', X: 443.85723840859566, Y: 161.18613504681866, Width: 10.5, Height: 8
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Text: 'A', X: 443.85723840859566, Y: 181.18613504681866, Width: 10.5, Height: 8
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Text: 'G', X: 443.85723840859566, Y: 201.18613504681866, Width: 10.5, Height: 8
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Text: 'A', X: 461.4617544878952, Y: 208.19733262234416, Width: 10.5, Height: 8
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Text: 'A', X: 476.4655983628445, Y: 219.77146528123112, Width: 10.5, Height: 8
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Text: 'A', X: 487.71618880520833, Y: 235.01941899730596, Width: 10.5, Height: 8
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Text: 'U', X: 508.8751080501131, Y: 301.1551138010494, Width: 10.5, Height: 8
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Text: 'G', X: 525.6316666137473, Y: 312.0738016848337, Width: 10.5, Height: 8
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Text: 'G', X: 542.3882251773814, Y: 322.992489568618, Width: 10.5, Height: 8
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Text: 'A', X: 559.1447837410155, Y: 333.9111774524023, Width: 10.5, Height: 8
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Text: 'G', X: 573.2723274196185, Y: 344.2389701256494, Width: 10.5, Height: 8
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Text: 'U', X: 572.016514316047, Y: 361.693875606382, Width: 10.5, Height: 8
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Text: 'C', X: 556.5560358864574, Y: 369.8929242475722, Width: 10.5, Height: 8
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Text: 'U', X: 541.4019159298662, Y: 361.14058511830785, Width: 10.5, Height: 8
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Text: 'C', X: 524.645357366232, Y: 350.22189723452357, Width: 10.5, Height: 8
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Text: 'U', X: 507.8887988025979, Y: 339.3032093507393, Width: 10.5, Height: 8
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Text: 'G', X: 491.1322402389637, Y: 328.384521466955, Width: 10.5, Height: 8
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Text: 'A', X: 460.1836255859982, Y: 327.7047565713211, Width: 10.5, Height: 8
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Text: 'U', X: 443.85723840859566, Y: 354.00547730259825, Width: 10.5, Height: 8
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Text: 'C', X: 443.85723840859566, Y: 374.00547730259825, Width: 10.5, Height: 8
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Text: 'G', X: 443.85723840859566, Y: 394.00547730259825, Width: 10.5, Height: 8
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Text: 'G', X: 447.40597279583477, Y: 411.1419219701894, Width: 10.5, Height: 8
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Text: 'G', X: 411.35723840859566, Y: 374.00547730259825, Width: 10.5, Height: 8
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Text: 'G', X: 411.35723840859566, Y: 354.00547730259825, Width: 10.5, Height: 8
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Text: 'C', X: 411.35723840859566, Y: 334.00547730259825, Width: 10.5, Height: 8
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Text: 'C', X: 392.13899481197774, Y: 326.0450201598893, Width: 10.5, Height: 8
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Text: 'U', X: 377.9968591882468, Y: 340.18715578362026, Width: 10.5, Height: 8
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Text: 'U', X: 363.85472356451584, Y: 354.3292914073512, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_9.svg


Warning: Font Verdana not found. Using default font.
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Text: 'G', X: 335.57045231705393, Y: 382.6135626548131, Width: 10.5, Height: 8
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Text: 'G', X: 321.428316693323, Y: 396.7556982785441, Width: 10.5, Height: 8
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Text: 'U', X: 314.75, Y: 412.8785810133871, Width: 10.5, Height: 8
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Text: 'C', X: 314.75, Y: 432.8785810133871, Width: 10.5, Height: 8
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Text: 'A', X: 332.25, Y: 432.8785810133871, Width: 10.5, Height: 8
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Text: '1', X: 5.5, Y: 452.878581013387, Width: 9.0, Height: 8
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Text: '10', X: 40.65517723467353, Y: 337.05030335205294, Width: 18.0, Height: 8
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Text: '20', X: 121.0, Y: 452.878581013387, Width: 18.0, Height: 8
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Text: '30', X: 264.3524526410695, Y: 427.01530283023055, Width: 18.0, Height: 8
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Text: '40', X: 335.7458469728841, Y: 274.33715210716946, Width: 18.0, Height: 8
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Text: '50', X: 380.9288612571064, Y: 125.01059861673582, Width: 18.0, Height: 8
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Text: '60', X: 474.2674250154368, Y: 35.825281072369535, Width: 18.0, Height: 8
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Text: '70', X: 467.6152382398648, Y: 190.82145826810017, Width: 18.0, Height: 8
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Text: '80', X: 587.6693314432633, Y: 335.83145890259317, Width: 18.0, Height: 8
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Text: '90', X: 460.10723840859566, Y: 354.00547730259825, Width: 18.0, Height: 8
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Text: '100', X: 398.35361527032524, Y: 353.43234187358087, Width: 27.0, Height: 8
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Text: '109', X: 324.0, Y: 452.8785810133871, Width: 27.0, Height: 8
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Text: 'HTT, -23.2 ± 0.9
 kcal/mol, AUC: 0.847', X: 223.01116370980924, Y: 465.6785810133871, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 605.6693314432633, 465.6785810133871)
Updated viewBox: -0.25 0.0 610.9193314432633 470.6785810133871
Updated SVG: /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_final_1.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGAGGAGGAAGUAGAUCCAAACACACAGAAUCCUAAGUAUAUCACUGCAGCCUGUGAGAUGGUGGCAGAAAUGGUGGAGUCUCUGCAGUCGGUGUUGGCCUUGGGUCA', '-structureDBN', '...(((((((......)))............))))....(((((((((((......(((((..((.((....)).))..))))))))))).))))).((((...)))).', '-o', '/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_9.svg', '-title', 'HTT, -25.3 ± 2.0\n kcal/mol, AUC: 0.63', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,8,9,12,13,15,17,29,32,35,38,39,41,43,47,48,51,54,55,56,57,59,61,62,63,64,65,66,69,73,74,75,76,77,78,80,81,83,85,86,89,90,92,93,94,95,96,97,98,99,102,103,104,105,106,107', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '33,67,100,101,70,44,49,19,20,53,84,91', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,68,7,71,79,18,82,22,23,87,30,31,34,37,40,108,109,46,52', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '4,72,10,11,14,16,21,24,25,26,27,28,88,36,42,45,50,58,60']
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Text: 'A', X: 104.35196602079424, Y: 296.5929356548859, Width: 10.5, Height: 8
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Text: 'C', X: 250.0641373942858, Y: 122.57021517667181, Width: 10.5, Height: 8
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Text: 'U', X: 231.7827477797289, Y: 130.68136760778606, Width: 10.5, Height: 8
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Text: 'A', X: 232.92338791067704, Y: 209.48572586828124, Width: 10.5, Height: 8
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Text: 'U', X: 249.94637160181537, Y: 245.68265980268012, Width: 10.5, Height: 8
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Text: 'C', X: 260.66760051303777, Y: 259.51397393522615, Width: 10.5, Height: 8
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Text: 'G', X: 256.85196602079424, Y: 276.5929356548859, Width: 10.5, Height: 8
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Text: 'G', X: 256.85196602079424, Y: 296.5929356548859, Width: 10.5, Height: 8
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Text: 'U', X: 256.85196602079424, Y: 316.5929356548859, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_7.svg


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Text: 'U', X: 256.85196602079424, Y: 356.5929356548859, Width: 10.5, Height: 8
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Text: 'U', X: 274.35196602079424, Y: 356.5929356548859, Width: 10.5, Height: 8
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Text: 'G', X: 291.85196602079424, Y: 356.5929356548859, Width: 10.5, Height: 8
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Text: 'G', X: 291.85196602079424, Y: 336.5929356548859, Width: 10.5, Height: 8
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Text: 'C', X: 291.85196602079424, Y: 316.5929356548859, Width: 10.5, Height: 8
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Text: 'C', X: 291.85196602079424, Y: 296.5929356548859, Width: 10.5, Height: 8
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Text: 'U', X: 292.7921671593514, Y: 279.1181877679644, Width: 10.5, Height: 8
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Text: 'U', X: 308.10196602079424, Y: 270.6411098094593, Width: 10.5, Height: 8
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Text: 'G', X: 323.4117648822371, Y: 279.1181877679644, Width: 10.5, Height: 8
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Text: 'G', X: 324.35196602079424, Y: 296.5929356548859, Width: 10.5, Height: 8
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Text: 'G', X: 324.35196602079424, Y: 316.5929356548859, Width: 10.5, Height: 8
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Text: 'U', X: 324.35196602079424, Y: 336.5929356548859, Width: 10.5, Height: 8
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Text: 'C', X: 324.35196602079424, Y: 356.5929356548859, Width: 10.5, Height: 8
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Text: 'A', X: 341.85196602079424, Y: 356.5929356548859, Width: 10.5, Height: 8
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Text: '1', X: 52.60196602079424, Y: 376.5929356548859, Width: 9.0, Height: 8
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Text: '10', X: 63.22058592697064, Y: 325.03610723276483, Width: 18.0, Height: 8
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Text: '20', X: 47.75211256166132, Y: 240.19256934250726, Width: 18.0, Height: 8
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Text: '30', X: 177.00078344178388, Y: 284.87385649412073, Width: 18.0, Height: 8
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Text: '40', X: 206.45983039706329, Y: 370.73507127861683, Width: 18.0, Height: 8
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Text: '50', X: 158.99750337715193, Y: 181.98315222394902, Width: 18.0, Height: 8
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Text: '60', X: 243.303751877168, Y: 66.4704150073456, Width: 18.0, Height: 8
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Text: '70', X: 421.72276800461293, Y: 8.0, Width: 18.0, Height: 8
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Text: '80', X: 287.99639673135124, Y: 125.68158361840415, Width: 18.0, Height: 8
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Text: '90', X: 265.1191776465032, Y: 239.2075218585799, Width: 18.0, Height: 8
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Text: '100', X: 263.60196602079424, Y: 316.5929356548859, Width: 27.0, Height: 8
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Text: '109', X: 333.60196602079424, Y: 376.5929356548859, Width: 27.0, Height: 8
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Text: 'HTT, -25.3 ± 2.0
 kcal/mol, AUC: 0.63', X: 150.64584008782805, Y: 389.3929356548859, Width: 133.5, Height: 23
Calculated bounding box: (4.75, 0.0, 439.72276800461293, 389.3929356548859)
Updated viewBox: -0.25 -5.0 444.97276800461293 399.3929356548859
Updated SVG: /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_final_9.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_final_9.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGAGGAGGAAGUAGAUCCAAACACACAGAAUCCUAAGUAUAUCACUGCAGCCUGUGAGAUGGUGGCAGAAAUGGUGGAGUCUCUGCAGUCGGUGUUGGCCUUGGGUCA', '-structureDBN', '.(((((.(((......)))............(((.......((((((((.(((........))).))))...))))))).)))))(((.....))).((((...)))).', '-o', '/disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_7.svg', '-title', 'HTT, -22.9 ± 1.5\n kcal/mol, AUC: 0.744', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,8,9,12,13,15,17,29,32,35,38,39,41,43,47,48,51,54,55,56,57,59,61,62,63,64,65,66,69,73,74,75,76,77,78,80,81,83,85,86,89,90,92,93,94,95,96,97,98,99,102,103,104,105,106,107', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '33,67,100,101,70,44,49,19,20,53,84,91', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,68,7,71,79,18,82,22,23,87,30,31,34,37,40,108,109,46,52', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '4,72,10,11,14,16,21,24,25,26,27,28,88,36,42,45,50,58,60']
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Warning: Font Verdana not found. Using default font.
Text: 'A', X: 149.8709962185373, Y: 211.40525532097763, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 159.89367141042894, Y: 197.05966429105348, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 176.8113935457194, Y: 192.58298273513486, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 190.95352916945035, Y: 178.4408471114039, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 205.0956647931813, Y: 164.29871148767296, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 219.23780041691225, Y: 150.156575863942, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 217.44607399217244, Y: 137.9015317356414, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 199.84716454238037, Y: 128.40003784373056, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 182.2482550925883, Y: 118.89854395181976, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 168.605369370183, Y: 129.85854710717467, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 152.47977444718308, Y: 136.65672247850182, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 152.47977444718308, Y: 156.65672247850182, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 152.47977444718308, Y: 176.65672247850182, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 152.47977444718308, Y: 196.65672247850185, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 152.47977444718308, Y: 216.65672247850185, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 169.97977444718308, Y: 216.65672247850185, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 169.97977444718308, Y: 196.65672247850185, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 169.97977444718308, Y: 176.65672247850182, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 163.33160484236515, Y: 160.46868217884725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 170.05782409840458, Y: 144.3129159525938, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 186.22977444718308, Y: 137.62570205184937, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 202.40172479596157, Y: 144.3129159525938, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 209.127944052001, Y: 160.46868217884725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 202.47977444718308, Y: 176.65672247850182, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 202.47977444718308, Y: 196.65672247850185, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 202.47977444718308, Y: 216.65672247850185, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 219.97977444718308, Y: 216.65672247850188, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 237.4797744471831, Y: 216.65672247850188, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 237.4797744471831, Y: 196.65672247850185, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 237.4797744471831, Y: 176.65672247850188, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 237.4797744471831, Y: 156.65672247850188, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 238.4199755857402, Y: 139.1819745915804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 253.7297744471831, Y: 130.70489663307535, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 269.0395733086259, Y: 139.1819745915804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 269.9797744471831, Y: 156.65672247850188, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 269.9797744471831, Y: 176.65672247850188, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 269.9797744471831, Y: 196.65672247850188, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 269.9797744471831, Y: 216.65672247850188, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 287.4797744471831, Y: 216.65672247850188, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 103.22977444718308, Y: 236.65672247850185, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: 62.30664444140035, Y: 154.57544146567648, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: 49.36089001909133, Y: 72.02420375469325, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: 211.43490171967994, Y: 49.36578907475888, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 285.80443607802505, Y: 181.79490824087293, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 237.4654771233968, Y: 298.8717100144089, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 171.0794199502438, Y: 409.59201684613174, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 129.67250896735396, Y: 237.41442433999117, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 175.10159116560067, Y: 147.0345460277356, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 152.1827621025747, Y: 130.15372728890395, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '100', X: 209.2297744471831, Y: 176.65672247850188, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '109', X: 279.2297744471831, Y: 236.65672247850188, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'HTT, -22.9 ± 1.5
 kcal/mol, AUC: 0.744', X: 80.9533393257039, Y: 438.36906778454494, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 306.2297744471831, 438.36906778454494)
Updated viewBox: -0.25 0.0 311.4797744471831 443.36906778454494
Updated SVG: /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_final_7.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/40480f41-39ba-4e94-bdaf-570e9e8084bc/final_image/HTT_fold_final_7.svg
