Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 159.16 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 159.16 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 159.16 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.86 MB
Based on canonical annotations, the following gene is in your area of interest: TNRC18(-)
write fasta - Elapsed time since the previous call: 0.88 seconds
write fasta - Current memory usage: 172.86 MB
Length of region: 119 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.23 seconds
write dat - Current memory usage: 176.48 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/fasta/TNRC18.fasta" "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/ct/TNRC18.ct" --SHAPE "TNRC18.dat"

fold - Elapsed time since the previous call: 0.16 seconds
fold - Current memory usage: 176.48 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/ct/TNRC18.ct" "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/fold_FE/TNRC18.txt" -sh "TNRC18.dat"

efn2 - Elapsed time since the previous call: 0.54 seconds
efn2 - Current memory usage: 176.48 MB
This region has 10 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/ct/TNRC18.ct" 1 "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/fold_dbn/TNRC18_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.48 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/ct/TNRC18.ct" 2 "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/fold_dbn/TNRC18_temp2.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.48 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/ct/TNRC18.ct" 3 "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/fold_dbn/TNRC18_temp3.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 176.48 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/ct/TNRC18.ct" 4 "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/fold_dbn/TNRC18_temp4.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.48 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/ct/TNRC18.ct" 5 "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/fold_dbn/TNRC18_temp5.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 176.48 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/ct/TNRC18.ct" 6 "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/fold_dbn/TNRC18_temp6.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.48 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/ct/TNRC18.ct" 7 "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/fold_dbn/TNRC18_temp7.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.48 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/ct/TNRC18.ct" 8 "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/fold_dbn/TNRC18_temp8.dbn"

ct2dot - Elapsed time since the previous call: 0.03 seconds
ct2dot - Current memory usage: 176.48 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/ct/TNRC18.ct" 9 "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/fold_dbn/TNRC18_temp9.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.48 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/ct/TNRC18.ct" 10 "/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/fold_dbn/TNRC18_temp10.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 176.48 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGUUUGACCAAGAUGAGAGCUCGGAGGAGGAGGACGAGGAGGAGGAGCUCGAGGAGGAGGACGAGGCCAGCGGUGGUGGCUACAGGCUGGGUGCCCGGGAGCGGGCCCUGUCACCGGGC', '-structureDBN', '(((((..((.......((((((......................)))))).....)).)))))..(((..((((((.((((...))))(((.(((((....)))))))).)))))))))', '-o', '/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_1.svg', '-title', 'TNRC18, -43.6 ± 1.3\n kcal/mol, AUC: 0.951', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,5,6,12,14,15,17,19,21,23,24,26,27,29,30,32,33,36,38,39,41,42,44,45,47,49,51,53,54,56,57,59,60,63,65,66,70,72,73,74,75,76,77,78,79,81,85,86,88,89,90,91,92,93,97,98,99,101,103,104,105,109,110,111,116,117,118', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '67,68,106,107,108,112,50,115,20,119,87,95', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '96,102,71,46,48,80,113,22,61,94', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,69,7,8,9,10,11,13,16,18,82,83,84,25,28,31,34,35,100,37,40,43,114,52,55,58,62']
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Text: 'G', X: 281.573014435726, Y: 256.7591985628774, Width: 10.5, Height: 8
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Text: 'U', X: 298.652046097161, Y: 252.94357969629473, Width: 10.5, Height: 8
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Text: 'G', X: 312.48335543016344, Y: 263.66492065543423, Width: 10.5, Height: 8
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Text: 'C', X: 330.58176306073995, Y: 272.176538670682, Width: 10.5, Height: 8
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Text: 'C', X: 348.68017069131645, Y: 280.6881566859298, Width: 10.5, Height: 8
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Text: 'C', X: 366.77857832189295, Y: 289.1997747011777, Width: 10.5, Height: 8
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Text: 'G', X: 384.87698595246945, Y: 297.7113927164255, Width: 10.5, Height: 8
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Text: 'G', X: 401.89437757620135, Y: 301.7930141982789, Width: 10.5, Height: 8
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Text: 'G', X: 409.4730985222101, Y: 317.5668609205949, Width: 10.5, Height: 8
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Text: 'A', X: 402.02541754015226, Y: 333.4029999571808, Width: 10.5, Height: 8
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Text: 'G', X: 385.04245114724824, Y: 337.6255707492554, Width: 10.5, Height: 8
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Text: 'C', X: 371.0456066776918, Y: 327.12130511611224, Width: 10.5, Height: 8
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Text: 'G', X: 352.9471990471153, Y: 318.60968710086445, Width: 10.5, Height: 8
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Text: 'G', X: 334.8487914165388, Y: 310.09806908561666, Width: 10.5, Height: 8
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Text: 'G', X: 316.7503837859623, Y: 301.58645107036887, Width: 10.5, Height: 8
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Text: 'C', X: 298.6519761553857, Y: 293.07483305512096, Width: 10.5, Height: 8
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Text: 'C', X: 281.573014435726, Y: 289.2591985628774, Width: 10.5, Height: 8
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Text: 'C', X: 261.573014435726, Y: 289.2591985628774, Width: 10.5, Height: 8
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Text: 'U', X: 241.57301443572598, Y: 289.2591985628774, Width: 10.5, Height: 8
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Text: 'G', X: 227.4418317763104, Y: 301.178759318825, Width: 10.5, Height: 8
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Text: 'U', X: 209.02117445235632, Y: 302.7426121641879, Width: 10.5, Height: 8
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Text: 'C', X: 194.87903882862537, Y: 316.88474778791885, Width: 10.5, Height: 8
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Text: 'A', X: 180.73690320489442, Y: 331.0268834116498, Width: 10.5, Height: 8
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Text: 'C', X: 166.59476758116347, Y: 345.16901903538087, Width: 10.5, Height: 8
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Text: 'C', X: 152.45263195743254, Y: 359.3111546591118, Width: 10.5, Height: 8
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Text: 'G', X: 138.3104963337016, Y: 373.4532902828428, Width: 10.5, Height: 8
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Text: 'G', X: 131.63217964037864, Y: 389.5761730176857, Width: 10.5, Height: 8
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Text: 'G', X: 131.63217964037864, Y: 409.5761730176857, Width: 10.5, Height: 8
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Text: 'C', X: 131.63217964037864, Y: 429.5761730176857, Width: 10.5, Height: 8
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Text: '1', X: 14.882179640378641, Y: 449.5761730176857, Width: 9.0, Height: 8
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Text: '10', X: -4.0, Y: 283.5446038605468, Width: 18.0, Height: 8
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Text: '20', X: 106.44404144823582, Y: 147.41298184978103, Width: 18.0, Height: 8
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Text: '30', X: 199.27845754272897, Y: 8.0, Width: 18.0, Height: 8
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Text: '40', X: 266.6856560191441, Y: 164.61792779756587, Width: 18.0, Height: 8
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Text: '50', X: 120.01868123692987, Y: 233.5672927548542, Width: 18.0, Height: 8
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Text: '60', X: 62.88217964037864, Y: 369.57617301768573, Width: 18.0, Height: 8
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Text: '70', X: 81.25400579867066, Y: 343.06893503784687, Width: 18.0, Height: 8
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Text: '80', X: 175.773617665104, Y: 207.2098017922554, Width: 18.0, Height: 8
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Text: '90', X: 257.823014435726, Y: 236.7591985628774, Width: 18.0, Height: 8
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Text: '100', X: 406.4666839176079, Y: 348.86041752081235, Width: 27.0, Height: 8
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Text: '110', X: 226.8455004236122, Y: 319.6563499690507, Width: 27.0, Height: 8
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Text: '119', X: 123.38217964037864, Y: 449.5761730176857, Width: 27.0, Height: 8
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Text: 'TNRC18, -43.6 ± 1.3
 kcal/mol, AUC: 0.951', X: 141.40407156742165, Y: 462.3761730176857, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 0.0, 433.4666839176079, 462.3761730176857)
Updated viewBox: -9.0 -5.0 447.4666839176079 472.3761730176857
Updated SVG: /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_final_1.svg/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_10.svg


['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGUUUGACCAAGAUGAGAGCUCGGAGGAGGAGGACGAGGAGGAGGAGCUCGAGGAGGAGGACGAGGCCAGCGGUGGUGGCUACAGGCUGGGUGCCCGGGAGCGGGCCCUGUCACCGGGC', '-structureDBN', '(((((..((.......((((((......................)))))).....)).)))))...(((((.((((...))))..)))))..((((((..((((...))))..))))))', '-o', '/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_10.svg', '-title', 'TNRC18, -43.3 ± 1.5\n kcal/mol, AUC: 0.795', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,5,6,12,14,15,17,19,21,23,24,26,27,29,30,32,33,36,38,39,41,42,44,45,47,49,51,53,54,56,57,59,60,63,65,66,70,72,73,74,75,76,77,78,79,81,85,86,88,89,90,91,92,93,97,98,99,101,103,104,105,109,110,111,116,117,118', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '67,68,106,107,108,112,50,115,20,119,87,95', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '96,102,71,46,48,80,113,22,61,94', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,69,7,8,9,10,11,13,16,18,82,83,84,25,28,31,34,35,100,37,40,43,114,52,55,58,62']
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Text: 'U', X: 14.132179640378638, Y: 389.5761730176857, Width: 10.5, Height: 8
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Text: 'U', X: 14.132179640378638, Y: 369.57617301768573, Width: 10.5, Height: 8
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Text: 'U', X: 14.132179640378638, Y: 349.57617301768573, Width: 10.5, Height: 8
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Text: 'G', X: 5.335044612633254, Y: 334.4480965599221, Width: 10.5, Height: 8
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Text: 'A', X: 8.391746028150038, Y: 317.2171691773142, Width: 10.5, Height: 8
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Text: 'C', X: 21.855665796864514, Y: 306.03811973337906, Width: 10.5, Height: 8
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Text: 'C', X: 28.735025220621466, Y: 287.25849210345075, Width: 10.5, Height: 8
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Text: 'A', X: 17.07603641095642, Y: 273.55418533647014, Width: 10.5, Height: 8
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Text: 'A', X: 11.056005785875954, Y: 256.59838174889285, Width: 10.5, Height: 8
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Text: 'G', X: 11.462816061168638, Y: 238.61020370253922, Width: 10.5, Height: 8
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Text: 'A', X: 18.24322518468071, Y: 221.9438874885344, Width: 10.5, Height: 8
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Text: 'U', X: 30.50983448901424, Y: 208.7806682697322, Width: 10.5, Height: 8
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Text: 'G', X: 46.65722864422865, Y: 200.84330686788377, Width: 10.5, Height: 8
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Text: 'A', X: 64.5720873780123, Y: 199.17062023375848, Width: 10.5, Height: 8
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Text: 'G', X: 81.90977020077393, Y: 203.98152434470495, Width: 10.5, Height: 8
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Text: 'A', X: 96.05190582450489, Y: 189.839388720974, Width: 10.5, Height: 8
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Text: 'G', X: 110.19404144823582, Y: 175.69725309724305, Width: 10.5, Height: 8
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Text: 'C', X: 124.33617707196677, Y: 161.55511747351198, Width: 10.5, Height: 8
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Text: 'U', X: 138.4783126956977, Y: 147.41298184978103, Width: 10.5, Height: 8
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Text: 'C', X: 152.62044831942865, Y: 133.27084622605008, Width: 10.5, Height: 8
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Text: 'G', X: 145.43815819095113, Y: 117.31259747933876, Width: 10.5, Height: 8
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Text: 'G', X: 142.4729048702859, Y: 100.06561898176341, Width: 10.5, Height: 8
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Text: 'A', X: 143.91295566184593, Y: 82.62494100557029, Width: 10.5, Height: 8
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Text: 'G', X: 149.66688010373605, Y: 66.09789202311237, Width: 10.5, Height: 8
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Text: 'G', X: 159.36935499172233, Y: 51.533793163260555, Width: 10.5, Height: 8
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Text: 'A', X: 172.40435916479132, Y: 39.857335619997855, Width: 10.5, Height: 8
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Text: 'G', X: 187.94428538899334, Y: 31.809870957267265, Width: 10.5, Height: 8
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Text: 'G', X: 205.00248608160186, Y: 27.902341855362522, Width: 10.5, Height: 8
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Text: 'A', X: 222.49591668782236, Y: 28.382841779285116, Width: 10.5, Height: 8
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Text: 'G', X: 239.31389941084885, Y: 33.220863242603116, Width: 10.5, Height: 8
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Text: 'G', X: 254.3886414078703, Y: 42.10923476244744, Width: 10.5, Height: 8
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Text: 'A', X: 266.763030171594, Y: 54.48362352617113, Width: 10.5, Height: 8
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Text: 'C', X: 275.6514016914384, Y: 69.55836552319255, Width: 10.5, Height: 8
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Text: 'G', X: 280.4894231547563, Y: 86.37634824621892, Width: 10.5, Height: 8
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Text: 'A', X: 280.969923078679, Y: 103.86977885243942, Width: 10.5, Height: 8
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Text: 'G', X: 277.0623939767744, Y: 120.92797954504789, Width: 10.5, Height: 8
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Text: 'G', X: 269.0149293140438, Y: 136.46790576924997, Width: 10.5, Height: 8
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Text: 'A', X: 257.3384717707811, Y: 149.50290994231904, Width: 10.5, Height: 8
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Text: 'G', X: 242.77437291092926, Y: 159.20538483030538, Width: 10.5, Height: 8
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Text: 'G', X: 226.24732392847145, Y: 164.95930927219553, Width: 10.5, Height: 8
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Text: 'A', X: 208.80664595227827, Y: 166.39936006375564, Width: 10.5, Height: 8
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Text: 'G', X: 191.55966745470295, Y: 163.43410674309047, Width: 10.5, Height: 8
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Text: 'G', X: 175.60141870799146, Y: 156.2518166146129, Width: 10.5, Height: 8
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Text: 'A', X: 161.4592830842605, Y: 170.39395223834384, Width: 10.5, Height: 8
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Text: 'G', X: 147.31714746052958, Y: 184.5360878620748, Width: 10.5, Height: 8
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Text: 'C', X: 133.17501183679863, Y: 198.67822348580574, Width: 10.5, Height: 8
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Text: 'U', X: 119.03287621306768, Y: 212.82035910953672, Width: 10.5, Height: 8
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Text: 'C', X: 104.89074058933676, Y: 226.9624947332678, Width: 10.5, Height: 8
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Text: 'G', X: 109.58436291683773, Y: 243.13753211020614, Width: 10.5, Height: 8
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Text: 'A', X: 108.61049429642262, Y: 259.9516186036419, Width: 10.5, Height: 8
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Text: 'G', X: 102.08081279011412, Y: 275.4766044047543, Width: 10.5, Height: 8
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Text: 'G', X: 90.74410746551726, Y: 287.93216690035547, Width: 10.5, Height: 8
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Text: 'A', X: 75.90041125708927, Y: 295.8899685798691, Width: 10.5, Height: 8
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Text: 'G', X: 59.25192011925495, Y: 298.4374511670559, Width: 10.5, Height: 8
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Text: 'G', X: 52.37256069549797, Y: 317.2170787969842, Width: 10.5, Height: 8
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Text: 'A', X: 55.42932379906949, Y: 334.44804508818925, Width: 10.5, Height: 8
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Text: 'G', X: 46.63217964037864, Y: 349.57617301768573, Width: 10.5, Height: 8
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Text: 'G', X: 46.63217964037864, Y: 369.57617301768573, Width: 10.5, Height: 8
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Text: 'A', X: 46.63217964037864, Y: 389.5761730176857, Width: 10.5, Height: 8
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Text: 'C', X: 46.63217964037864, Y: 409.5761730176857, Width: 10.5, Height: 8
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Text: 'G', X: 46.63217964037864, Y: 429.5761730176857, Width: 10.5, Height: 8
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Text: 'A', X: 64.13217964037864, Y: 429.5761730176857, Width: 10.5, Height: 8
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Text: 'G', X: 81.63217964037864, Y: 429.5761730176857, Width: 10.5, Height: 8
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Text: 'G', X: 99.13217964037864, Y: 429.5761730176857, Width: 10.5, Height: 8
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Text: 'C', X: 116.63217964037864, Y: 429.5761730176857, Width: 10.5, Height: 8
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Text: 'C', X: 116.63217964037864, Y: 409.5761730176857, Width: 10.5, Height: 8
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Text: 'A', X: 116.63217964037864, Y: 389.5761730176857, Width: 10.5, Height: 8
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Text: 'G', X: 116.63217964037864, Y: 369.57617301768573, Width: 10.5, Height: 8
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Text: 'C', X: 116.63217964037864, Y: 349.57617301768573, Width: 10.5, Height: 8
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Text: 'G', X: 107.83504917814568, Y: 334.44812229578145, Width: 10.5, Height: 8
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Text: 'G', X: 110.8917197497347, Y: 317.21721436756025, Width: 10.5, Height: 8
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Text: 'U', X: 104.01224455001682, Y: 298.4376291491252, Width: 10.5, Height: 8
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Text: 'G', X: 97.13276935029893, Y: 279.65804393069004, Width: 10.5, Height: 8
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Text: 'G', X: 90.25329415058104, Y: 260.878458712255, Width: 10.5, Height: 8
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Text: 'U', X: 85.12526878531128, Y: 244.14662833582688, Width: 10.5, Height: 8
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Text: 'G', X: 96.58496002600909, Y: 230.92065886057546, Width: 10.5, Height: 8
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Text: 'G', X: 113.87643602486798, Y: 233.61429017783038, Width: 10.5, Height: 8
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Text: 'C', X: 120.77012013053809, Y: 249.69931151271336, Width: 10.5, Height: 8
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Text: 'U', X: 127.64959533025598, Y: 268.47889673114844, Width: 10.5, Height: 8
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Text: 'A', X: 134.52907052997386, Y: 287.2584819495836, Width: 10.5, Height: 8
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Text: 'C', X: 141.40854572969175, Y: 306.03806716801864, Width: 10.5, Height: 8
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Text: 'A', X: 154.87256069549798, Y: 317.2170787969842, Width: 10.5, Height: 8
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Text: 'G', X: 157.9293237990695, Y: 334.44804508818925, Width: 10.5, Height: 8
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Text: 'G', X: 149.13217964037864, Y: 349.57617301768573, Width: 10.5, Height: 8
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Text: 'C', X: 149.13217964037864, Y: 369.57617301768573, Width: 10.5, Height: 8
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Text: 'U', X: 149.13217964037864, Y: 389.5761730176857, Width: 10.5, Height: 8
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Text: 'G', X: 149.13217964037864, Y: 409.5761730176857, Width: 10.5, Height: 8
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Text: 'G', X: 149.13217964037864, Y: 429.5761730176857, Width: 10.5, Height: 8
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Text: 'G', X: 166.63217964037864, Y: 429.5761730176857, Width: 10.5, Height: 8
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Text: 'U', X: 184.13217964037864, Y: 429.5761730176857, Width: 10.5, Height: 8
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Text: 'G', X: 201.63217964037864, Y: 429.5761730176857, Width: 10.5, Height: 8
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Text: 'C', X: 201.63217964037864, Y: 409.5761730176857, Width: 10.5, Height: 8
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Text: 'C', X: 201.63217964037864, Y: 389.57617301768573, Width: 10.5, Height: 8
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Text: 'C', X: 234.13217964037864, Y: 349.57617301768573, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_4.svg


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Text: 'TNRC18, -43.3 ± 1.5
 kcal/mol, AUC: 0.795', X: 77.15248384565612, Y: 462.3761730176857, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 0.0, 291.469923078679, 462.3761730176857)
Updated viewBox: -9.0 -5.0 305.469923078679 472.3761730176857
Updated SVG: /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_final_10.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_final_10.svg
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Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_5.svg


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Text: '119', X: 330.8821796403787, Y: 449.57617301768573, Width: 27.0, Height: 8
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Text: 'TNRC18, -43.3 ± 1.3
 kcal/mol, AUC: 0.854', X: 106.23361212650596, Y: 462.37617301768574, Width: 142.5, Height: 23
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Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_final_4.svg
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Text: 'G', X: 234.13217964037864, Y: 369.57617301768573, Width: 10.5, Height: 8
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Text: 'G', X: 234.13217964037864, Y: 389.57617301768573, Width: 10.5, Height: 8
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Text: 'G', X: 234.13217964037864, Y: 409.57617301768573, Width: 10.5, Height: 8
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Text: 'C', X: 234.13217964037864, Y: 429.57617301768573, Width: 10.5, Height: 8
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Text: 'C', X: 251.6321796403787, Y: 429.57617301768573, Width: 10.5, Height: 8
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Text: 'C', X: 251.6321796403787, Y: 409.57617301768573, Width: 10.5, Height: 8
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Text: 'U', X: 251.6321796403787, Y: 389.57617301768573, Width: 10.5, Height: 8
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Text: 'G', X: 251.6321796403787, Y: 369.57617301768573, Width: 10.5, Height: 8
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Text: 'U', X: 248.0834452531395, Y: 352.4397283500945, Width: 10.5, Height: 8
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Text: 'C', X: 259.1321617604457, Y: 338.86854140356076, Width: 10.5, Height: 8
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Text: 'A', X: 276.6321975203117, Y: 338.86854140356076, Width: 10.5, Height: 8
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Text: 'C', X: 287.68091402761775, Y: 352.4397283500945, Width: 10.5, Height: 8
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Text: 'C', X: 284.1321796403787, Y: 369.57617301768573, Width: 10.5, Height: 8
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Text: 'G', X: 284.1321796403787, Y: 389.57617301768573, Width: 10.5, Height: 8
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Text: 'G', X: 284.1321796403787, Y: 409.57617301768573, Width: 10.5, Height: 8
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Text: 'G', X: 284.1321796403787, Y: 429.57617301768573, Width: 10.5, Height: 8
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Text: 'C', X: 301.6321796403787, Y: 429.57617301768573, Width: 10.5, Height: 8
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Text: '1', X: 14.882179640378638, Y: 449.57617301768573, Width: 9.0, Height: 8
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Text: '10', X: -4.0, Y: 283.5446038605468, Width: 18.0, Height: 8
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Text: '20', X: 106.44404144823582, Y: 147.41298184978103, Width: 18.0, Height: 8
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Text: '30', X: 199.27845754272897, Y: 8.0, Width: 18.0, Height: 8
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Text: '40', X: 266.68565601914406, Y: 164.61792779756587, Width: 18.0, Height: 8
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Text: '50', X: 120.01868123692987, Y: 233.56729275485424, Width: 18.0, Height: 8
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Text: '60', X: 62.88217964037864, Y: 369.57617301768573, Width: 18.0, Height: 8
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Text: '70', X: 92.88217964037864, Y: 369.57617301768573, Width: 18.0, Height: 8
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Text: '80', X: 133.1705048567695, Y: 237.90248680456796, Width: 18.0, Height: 8
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Text: '90', X: 159.5243152641096, Y: 443.7183086414167, Width: 18.0, Height: 8
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Text: '100', X: 226.9687691427104, Y: 300.80557410099897, Width: 27.0, Height: 8
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Text: '110', X: 223.5254671096675, Y: 367.18640995982884, Width: 27.0, Height: 8
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Text: '119', X: 293.3821796403787, Y: 449.57617301768573, Width: 27.0, Height: 8
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Text: 'TNRC18, -42.5 ± 1.5
 kcal/mol, AUC: 0.841', X: 87.48361212650596, Y: 462.37617301768574, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 0.0, 320.3821796403787, 462.37617301768574)
Updated viewBox: -9.0 -5.0 334.3821796403787 472.37617301768574
Updated SVG: /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_final_5.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_final_5.svg/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_6.svg


['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGUUUGACCAAGAUGAGAGCUCGGAGGAGGAGGACGAGGAGGAGGAGCUCGAGGAGGAGGACGAGGCCAGCGGUGGUGGCUACAGGCUGGGUGCCCGGGAGCGGGCCCUGUCACCGGGC', '-structureDBN', '(((((..((.......((((((......................)))))).....)).))))).(((((.(....))))))....(((.((((((((....)))))......))).)))', '-o', '/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_6.svg', '-title', 'TNRC18, -41.8 ± 1.6\n kcal/mol, AUC: 0.835', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,5,6,12,14,15,17,19,21,23,24,26,27,29,30,32,33,36,38,39,41,42,44,45,47,49,51,53,54,56,57,59,60,63,65,66,70,72,73,74,75,76,77,78,79,81,85,86,88,89,90,91,92,93,97,98,99,101,103,104,105,109,110,111,116,117,118', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '67,68,106,107,108,112,50,115,20,119,87,95', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '96,102,71,46,48,80,113,22,61,94', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,69,7,8,9,10,11,13,16,18,82,83,84,25,28,31,34,35,100,37,40,43,114,52,55,58,62']
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Text: 'G', X: 14.132179640378638, Y: 409.5761730176857, Width: 10.5, Height: 8
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Text: 'U', X: 14.132179640378638, Y: 389.5761730176857, Width: 10.5, Height: 8
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Text: 'U', X: 14.132179640378638, Y: 369.57617301768573, Width: 10.5, Height: 8
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Text: 'U', X: 14.132179640378638, Y: 349.57617301768573, Width: 10.5, Height: 8
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Text: 'G', X: 5.335044612633254, Y: 334.4480965599221, Width: 10.5, Height: 8
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Text: 'A', X: 8.391746028150038, Y: 317.2171691773142, Width: 10.5, Height: 8
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Text: 'C', X: 21.855665796864514, Y: 306.03811973337906, Width: 10.5, Height: 8
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Text: 'C', X: 28.735025220621466, Y: 287.25849210345075, Width: 10.5, Height: 8
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Text: 'A', X: 17.07603641095642, Y: 273.55418533647014, Width: 10.5, Height: 8
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Text: 'A', X: 11.056005785875954, Y: 256.59838174889285, Width: 10.5, Height: 8
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Text: 'G', X: 11.462816061168638, Y: 238.61020370253922, Width: 10.5, Height: 8
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Text: 'A', X: 18.24322518468071, Y: 221.9438874885344, Width: 10.5, Height: 8
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Text: 'U', X: 30.50983448901424, Y: 208.7806682697322, Width: 10.5, Height: 8
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Text: 'G', X: 46.65722864422865, Y: 200.84330686788377, Width: 10.5, Height: 8
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Text: 'A', X: 64.5720873780123, Y: 199.17062023375848, Width: 10.5, Height: 8
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Text: 'G', X: 81.90977020077393, Y: 203.98152434470495, Width: 10.5, Height: 8
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Text: 'A', X: 96.05190582450489, Y: 189.839388720974, Width: 10.5, Height: 8
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Text: 'G', X: 110.19404144823582, Y: 175.69725309724305, Width: 10.5, Height: 8
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Text: 'C', X: 124.33617707196677, Y: 161.55511747351198, Width: 10.5, Height: 8
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Text: 'U', X: 138.4783126956977, Y: 147.41298184978103, Width: 10.5, Height: 8
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Text: 'C', X: 152.62044831942865, Y: 133.27084622605008, Width: 10.5, Height: 8
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Text: 'G', X: 145.43815819095113, Y: 117.31259747933876, Width: 10.5, Height: 8
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Text: 'G', X: 142.4729048702859, Y: 100.06561898176341, Width: 10.5, Height: 8
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Text: 'A', X: 143.91295566184593, Y: 82.62494100557029, Width: 10.5, Height: 8
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Text: 'G', X: 149.66688010373605, Y: 66.09789202311237, Width: 10.5, Height: 8
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Text: 'G', X: 159.36935499172233, Y: 51.533793163260555, Width: 10.5, Height: 8
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Text: 'A', X: 172.40435916479132, Y: 39.857335619997855, Width: 10.5, Height: 8
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Text: 'G', X: 187.94428538899334, Y: 31.809870957267265, Width: 10.5, Height: 8
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Text: 'G', X: 205.00248608160186, Y: 27.902341855362522, Width: 10.5, Height: 8
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Text: 'A', X: 222.49591668782236, Y: 28.382841779285116, Width: 10.5, Height: 8
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Text: 'G', X: 239.31389941084885, Y: 33.220863242603116, Width: 10.5, Height: 8
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Text: 'G', X: 254.3886414078703, Y: 42.10923476244744, Width: 10.5, Height: 8
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Text: 'A', X: 266.763030171594, Y: 54.48362352617113, Width: 10.5, Height: 8
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Text: 'C', X: 275.6514016914384, Y: 69.55836552319255, Width: 10.5, Height: 8
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Text: 'G', X: 280.4894231547563, Y: 86.37634824621892, Width: 10.5, Height: 8
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Text: 'A', X: 280.969923078679, Y: 103.86977885243942, Width: 10.5, Height: 8
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Text: 'G', X: 277.0623939767744, Y: 120.92797954504789, Width: 10.5, Height: 8
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Text: 'G', X: 269.0149293140438, Y: 136.46790576924997, Width: 10.5, Height: 8
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Text: 'A', X: 257.3384717707811, Y: 149.50290994231904, Width: 10.5, Height: 8
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Text: 'G', X: 242.77437291092926, Y: 159.20538483030538, Width: 10.5, Height: 8
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Text: 'G', X: 226.24732392847145, Y: 164.95930927219553, Width: 10.5, Height: 8
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Text: 'A', X: 208.80664595227827, Y: 166.39936006375564, Width: 10.5, Height: 8
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Text: 'G', X: 191.55966745470295, Y: 163.43410674309047, Width: 10.5, Height: 8
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Text: 'G', X: 175.60141870799146, Y: 156.2518166146129, Width: 10.5, Height: 8
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Text: 'A', X: 161.4592830842605, Y: 170.39395223834384, Width: 10.5, Height: 8
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Text: 'G', X: 147.31714746052958, Y: 184.5360878620748, Width: 10.5, Height: 8
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Text: 'C', X: 133.17501183679863, Y: 198.67822348580574, Width: 10.5, Height: 8
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Text: 'U', X: 119.03287621306768, Y: 212.82035910953672, Width: 10.5, Height: 8
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Text: 'C', X: 104.89074058933676, Y: 226.9624947332678, Width: 10.5, Height: 8
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Text: 'G', X: 109.58436291683773, Y: 243.13753211020614, Width: 10.5, Height: 8
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Text: 'A', X: 108.61049429642262, Y: 259.9516186036419, Width: 10.5, Height: 8
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Text: 'G', X: 102.08081279011412, Y: 275.4766044047543, Width: 10.5, Height: 8
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Text: 'G', X: 90.74410746551726, Y: 287.93216690035547, Width: 10.5, Height: 8
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Text: 'A', X: 75.90041125708927, Y: 295.8899685798691, Width: 10.5, Height: 8
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Text: 'G', X: 59.25192011925495, Y: 298.4374511670559, Width: 10.5, Height: 8
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Text: 'G', X: 52.37256069549797, Y: 317.2170787969842, Width: 10.5, Height: 8
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Text: 'A', X: 55.42932379906949, Y: 334.44804508818925, Width: 10.5, Height: 8
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Text: 'G', X: 46.63217964037864, Y: 349.57617301768573, Width: 10.5, Height: 8
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Text: 'G', X: 46.63217964037864, Y: 369.57617301768573, Width: 10.5, Height: 8
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Text: 'A', X: 46.63217964037864, Y: 389.5761730176857, Width: 10.5, Height: 8
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Text: 'C', X: 46.63217964037864, Y: 409.5761730176857, Width: 10.5, Height: 8
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Text: 'G', X: 46.63217964037864, Y: 429.5761730176857, Width: 10.5, Height: 8
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Text: 'A', X: 64.13217964037864, Y: 429.5761730176857, Width: 10.5, Height: 8
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Text: 'G', X: 81.63217964037864, Y: 429.5761730176857, Width: 10.5, Height: 8
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Text: 'G', X: 81.63217964037864, Y: 409.5761730176857, Width: 10.5, Height: 8
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Text: 'C', X: 81.63217964037864, Y: 389.5761730176857, Width: 10.5, Height: 8
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Text: 'C', X: 81.63217964037864, Y: 369.57617301768573, Width: 10.5, Height: 8
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Text: 'A', X: 81.63217964037864, Y: 349.57617301768573, Width: 10.5, Height: 8
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Text: 'G', X: 77.81656077379597, Y: 332.4971413562507, Width: 10.5, Height: 8
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Text: 'C', X: 88.53790173293541, Y: 318.6658320232483, Width: 10.5, Height: 8
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Text: 'G', X: 92.61952321478884, Y: 301.6484403995164, Width: 10.5, Height: 8
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Text: 'G', X: 108.39336993710475, Y: 294.0697194535077, Width: 10.5, Height: 8
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Text: 'U', X: 124.22950897369074, Y: 301.5174004355655, Width: 10.5, Height: 8
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Text: 'G', X: 128.45207976576538, Y: 318.5003668284694, Width: 10.5, Height: 8
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Text: 'G', X: 117.9478141326222, Y: 332.49721129802595, Width: 10.5, Height: 8
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Text: 'U', X: 114.13217964037864, Y: 349.57617301768573, Width: 10.5, Height: 8
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Text: 'G', X: 114.13217964037864, Y: 369.57617301768573, Width: 10.5, Height: 8
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Text: 'G', X: 114.13217964037864, Y: 389.5761730176857, Width: 10.5, Height: 8
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Text: 'C', X: 114.13217964037864, Y: 409.5761730176857, Width: 10.5, Height: 8
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Text: 'U', X: 114.13217964037864, Y: 429.5761730176857, Width: 10.5, Height: 8
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Text: 'A', X: 131.63217964037864, Y: 429.5761730176857, Width: 10.5, Height: 8
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Text: 'C', X: 149.13217964037864, Y: 429.5761730176857, Width: 10.5, Height: 8
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Text: 'A', X: 166.63217964037864, Y: 429.5761730176857, Width: 10.5, Height: 8
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Text: 'G', X: 184.13217964037864, Y: 429.5761730176857, Width: 10.5, Height: 8
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Text: 'G', X: 201.63217964037864, Y: 429.5761730176857, Width: 10.5, Height: 8
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Text: 'C', X: 201.63217964037864, Y: 409.5761730176857, Width: 10.5, Height: 8
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Text: 'U', X: 201.63217964037864, Y: 389.57617301768573, Width: 10.5, Height: 8
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Text: 'G', X: 194.95380248888938, Y: 373.4006365876029, Width: 10.5, Height: 8
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Text: 'G', X: 201.63217964037864, Y: 357.22510015752016, Width: 10.5, Height: 8
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Text: 'G', X: 201.63217964037864, Y: 337.22510015752016, Width: 10.5, Height: 8
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Text: 'U', X: 201.63217964037864, Y: 317.22510015752016, Width: 10.5, Height: 8
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Text: 'G', X: 188.75774213207146, Y: 304.35066264921295, Width: 10.5, Height: 8
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Text: 'C', X: 168.75774213207146, Y: 304.35066264921295, Width: 10.5, Height: 8
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Text: 'C', X: 148.75774213207146, Y: 304.35066264921295, Width: 10.5, Height: 8
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Text: 'C', X: 128.75774213207146, Y: 304.35066264921295, Width: 10.5, Height: 8
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Text: 'G', X: 108.75774213207146, Y: 304.35066264921295, Width: 10.5, Height: 8
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Text: 'G', X: 91.62129746448029, Y: 307.8993970364521, Width: 10.5, Height: 8
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Text: 'G', X: 78.05011051794651, Y: 296.85068052914596, Width: 10.5, Height: 8
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Text: 'A', X: 78.0501105179465, Y: 279.35064476928005, Width: 10.5, Height: 8
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Text: 'G', X: 91.62129746448026, Y: 268.3019282619739, Width: 10.5, Height: 8
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Text: 'C', X: 108.75774213207146, Y: 271.85066264921295, Width: 10.5, Height: 8
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Text: 'G', X: 128.75774213207146, Y: 271.85066264921295, Width: 10.5, Height: 8
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Text: 'G', X: 148.75774213207146, Y: 271.85066264921295, Width: 10.5, Height: 8
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Text: 'G', X: 168.75774213207146, Y: 271.85066264921295, Width: 10.5, Height: 8
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Text: 'C', X: 188.75774213207146, Y: 271.85066264921295, Width: 10.5, Height: 8
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Text: 'G', X: 246.79996105897519, Y: 271.48569114753525, Width: 10.5, Height: 8
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Text: 'A', X: 234.13217964037864, Y: 317.22510015752016, Width: 10.5, Height: 8
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Text: 'C', X: 234.13217964037864, Y: 337.22510015752016, Width: 10.5, Height: 8
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Text: 'C', X: 234.13217964037864, Y: 357.22510015752016, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_7.svg


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Text: 'G', X: 234.13217964037864, Y: 409.57617301768573, Width: 10.5, Height: 8
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Text: 'C', X: 234.13217964037864, Y: 429.5761730176857, Width: 10.5, Height: 8
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Text: '1', X: 14.882179640378638, Y: 449.5761730176857, Width: 9.0, Height: 8
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Text: '10', X: -4.0, Y: 283.5446038605468, Width: 18.0, Height: 8
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Text: '20', X: 106.44404144823582, Y: 147.41298184978103, Width: 18.0, Height: 8
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Text: '30', X: 199.27845754272897, Y: 8.0, Width: 18.0, Height: 8
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Text: '40', X: 266.68565601914406, Y: 164.61792779756587, Width: 18.0, Height: 8
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Text: '50', X: 120.01868123692987, Y: 233.5672927548542, Width: 18.0, Height: 8
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Text: '60', X: 62.88217964037864, Y: 369.57617301768573, Width: 18.0, Height: 8
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Text: '70', X: 54.54774737989918, Y: 328.13641622225805, Width: 18.0, Height: 8
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Text: '80', X: 130.38217964037864, Y: 409.5761730176857, Width: 18.0, Height: 8
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Text: '90', X: 177.88217964037864, Y: 357.22510015752016, Width: 18.0, Height: 8
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Text: '110', X: 255.89139091382913, Y: 261.52201659498286, Width: 27.0, Height: 8
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Text: '119', X: 225.88217964037864, Y: 449.5761730176857, Width: 27.0, Height: 8
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Text: 'TNRC18, -41.8 ± 1.6
 kcal/mol, AUC: 0.835', X: 77.15248384565612, Y: 462.3761730176857, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 0.0, 291.469923078679, 462.3761730176857)
Updated viewBox: -9.0 -5.0 305.469923078679 472.3761730176857
Updated SVG: /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_final_6.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_final_6.svg
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Text: 'G', X: 111.39816960481792, Y: 305.16978803593815, Width: 10.5, Height: 8
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Text: 'G', X: 216.39816960481792, Y: 345.16978803593815, Width: 10.5, Height: 8
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Text: 'C', X: 356.78105983072965, Y: 223.29497473844586, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_9.svg


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Text: 'TNRC18, -40.4 ± 1.4
 kcal/mol, AUC: 0.833', X: 144.18387651728574, Y: 397.9697880359382, Width: 142.5, Height: 23
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Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_final_7.svg
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Text: 'G', X: 146.39816960481792, Y: 347.014444682774, Width: 10.5, Height: 8
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Text: '10', X: 66.79628097816288, Y: 270.77814202172317, Width: 18.0, Height: 8
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Text: '40', X: 195.31810423123656, Y: 8.0, Width: 18.0, Height: 8
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Text: '50', X: 361.6192568272568, Y: 58.54700417350438, Width: 18.0, Height: 8
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Text: '60', X: 406.6135730376454, Y: 150.6040723751317, Width: 18.0, Height: 8
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Text: '70', X: 366.9012094676027, Y: 166.57951372083065, Width: 18.0, Height: 8
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Text: '80', X: 431.5204179295703, Y: 288.1750181091151, Width: 18.0, Height: 8
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Text: '90', X: 283.56118064257794, Y: 180.91372769698503, Width: 18.0, Height: 8
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Text: '110', X: 180.53825304843122, Y: 216.3627134759601, Width: 27.0, Height: 8
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Text: '119', X: 138.14816960481792, Y: 387.014444682774, Width: 27.0, Height: 8
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Text: 'TNRC18, -38.9 ± 1.8
 kcal/mol, AUC: 0.818', X: 170.7394265432643, Y: 399.814444682774, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 479.2288530865286, 399.814444682774)
Updated viewBox: -0.25 -5.0 484.4788530865286 409.814444682774
Updated SVG: /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_final_9.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_final_9.svg/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_8.svg


['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGUUUGACCAAGAUGAGAGCUCGGAGGAGGAGGACGAGGAGGAGGAGCUCGAGGAGGAGGACGAGGCCAGCGGUGGUGGCUACAGGCUGGGUGCCCGGGAGCGGGCCCUGUCACCGGGC', '-structureDBN', '(((((.....)))))...((((((..........((((.........)))).............(((((.(....))))))...(((.(((.(((((....))))))))))).))))))', '-o', '/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_8.svg', '-title', 'TNRC18, -38.1 ± 1.1\n kcal/mol, AUC: 0.824', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,5,6,12,14,15,17,19,21,23,24,26,27,29,30,32,33,36,38,39,41,42,44,45,47,49,51,53,54,56,57,59,60,63,65,66,70,72,73,74,75,76,77,78,79,81,85,86,88,89,90,91,92,93,97,98,99,101,103,104,105,109,110,111,116,117,118', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '67,68,106,107,108,112,50,115,20,119,87,95', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '96,102,71,46,48,80,113,22,61,94', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,69,7,8,9,10,11,13,16,18,82,83,84,25,28,31,34,35,100,37,40,43,114,52,55,58,62']
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Text: 'C', X: 288.7357461147655, Y: 311.68448608246365, Width: 10.5, Height: 8
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Text: 'C', X: 254.32766427027133, Y: 243.71624408233637, Width: 10.5, Height: 8
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Text: 'A', X: 238.19065570427836, Y: 250.4872820043295, Width: 10.5, Height: 8
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Text: 'C', X: 221.16705785941306, Y: 254.54278646324687, Width: 10.5, Height: 8
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Text: 'C', X: 221.16705785941306, Y: 274.5427864632469, Width: 10.5, Height: 8
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Text: 'G', X: 221.16705785941306, Y: 294.5427864632469, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_3.svg


Warning: Font Verdana not found. Using default font.
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Text: '1', X: 86.91705785941306, Y: 374.5427864632469, Width: 9.0, Height: 8
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Text: '10', X: 141.56516923275802, Y: 258.30648380219606, Width: 18.0, Height: 8
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Text: '70', X: 408.5759904583822, Y: 108.98917839922592, Width: 18.0, Height: 8
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Text: '119', X: 212.91705785941306, Y: 374.5427864632469, Width: 27.0, Height: 8
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Text: 'TNRC18, -38.1 ± 1.1
 kcal/mol, AUC: 0.824', X: 159.57134361356628, Y: 486.17415460487206, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 456.89268722713257, 486.17415460487206)
Updated viewBox: -0.25 0.0 462.14268722713257 491.17415460487206
Updated SVG: /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_final_8.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_final_8.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGUUUGACCAAGAUGAGAGCUCGGAGGAGGAGGACGAGGAGGAGGAGCUCGAGGAGGAGGACGAGGCCAGCGGUGGUGGCUACAGGCUGGGUGCCCGGGAGCGGGCCCUGUCACCGGGC', '-structureDBN', '(((((.....)))))...((((((..((..(((..............(((......))).((..(((((((.......)))...))))..))(((((....)))))))).)).))))))', '-o', '/disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_3.svg', '-title', 'TNRC18, -38.5 ± 1.6\n kcal/mol, AUC: 0.864', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,5,6,12,14,15,17,19,21,23,24,26,27,29,30,32,33,36,38,39,41,42,44,45,47,49,51,53,54,56,57,59,60,63,65,66,70,72,73,74,75,76,77,78,79,81,85,86,88,89,90,91,92,93,97,98,99,101,103,104,105,109,110,111,116,117,118', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '67,68,106,107,108,112,50,115,20,119,87,95', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '96,102,71,46,48,80,113,22,61,94', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,69,7,8,9,10,11,13,16,18,82,83,84,25,28,31,34,35,100,37,40,43,114,52,55,58,62']
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Text: 'C', X: 355.68923871318384, Y: 73.75829175787754, Width: 10.5, Height: 8
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Text: 'G', X: 399.3125983774387, Y: 98.75827964099875, Width: 10.5, Height: 8
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Text: 'G', X: 355.68923871318384, Y: 106.25829175787754, Width: 10.5, Height: 8
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Text: 'G', X: 315.68923871318384, Y: 106.25829175787754, Width: 10.5, Height: 8
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Text: 'G', X: 311.872284042385, Y: 118.29013956503013, Width: 10.5, Height: 8
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Text: 'C', X: 320.2056130226773, Y: 143.63907089460668, Width: 10.5, Height: 8
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Text: 'G', X: 312.22220735270594, Y: 196.29669492236826, Width: 10.5, Height: 8
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Text: 'G', X: 299.84783619018833, Y: 183.92232375985066, Width: 10.5, Height: 8
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Text: 'G', X: 297.2246426341145, Y: 166.62004128316948, Width: 10.5, Height: 8
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Text: 'U', X: 283.08250701038367, Y: 152.47790565943853, Width: 10.5, Height: 8
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Text: 'G', X: 259.8438634973854, Y: 162.1036669736759, Width: 10.5, Height: 8
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Text: 'C', X: 259.8438634973854, Y: 182.1036669736759, Width: 10.5, Height: 8
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Text: 'C', X: 259.8438634973854, Y: 202.1036669736759, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_2.svg


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Text: 'TNRC18, -38.5 ± 1.6
 kcal/mol, AUC: 0.864', X: 188.41388476679947, Y: 391.0161374802809, Width: 142.5, Height: 23
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Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_final_3.svg
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Text: 'TNRC18, -41.0 ± 1.4
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Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/4139a401-893b-4c53-a0a3-510397369481/final_image/TNRC18_fold_final_2.svg
