Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_9.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 156.48 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 156.48 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 156.48 MB
read annotations - Elapsed time since the previous call: 0.10 seconds
read annotations - Current memory usage: 169.95 MB
Based on canonical annotations, the following gene is in your area of interest: KRAS(-)
write fasta - Elapsed time since the previous call: 0.53 seconds
write fasta - Current memory usage: 169.95 MB
Length of region: 118 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.20 seconds
write dat - Current memory usage: 173.07 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/fasta/KRAS.fasta" "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/ct/KRAS.ct" --SHAPE "KRAS.dat"

fold - Elapsed time since the previous call: 0.19 seconds
fold - Current memory usage: 173.07 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/ct/KRAS.ct" "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/fold_FE/KRAS.txt" -sh "KRAS.dat"

efn2 - Elapsed time since the previous call: 0.63 seconds
efn2 - Current memory usage: 173.07 MB
This region has 10 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/ct/KRAS.ct" 1 "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/fold_dbn/KRAS_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.07 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/ct/KRAS.ct" 2 "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/fold_dbn/KRAS_temp2.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.07 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/ct/KRAS.ct" 3 "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/fold_dbn/KRAS_temp3.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.07 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/ct/KRAS.ct" 4 "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/fold_dbn/KRAS_temp4.dbn"

ct2dot - Elapsed time since the previous call: 0.03 seconds
ct2dot - Current memory usage: 173.07 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/ct/KRAS.ct" 5 "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/fold_dbn/KRAS_temp5.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.07 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/ct/KRAS.ct" 6 "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/fold_dbn/KRAS_temp6.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.07 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/ct/KRAS.ct" 7 "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/fold_dbn/KRAS_temp7.dbn"

ct2dot - Elapsed time since the previous call: 0.03 seconds
ct2dot - Current memory usage: 173.07 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/ct/KRAS.ct" 8 "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/fold_dbn/KRAS_temp8.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 173.07 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/ct/KRAS.ct" 9 "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/fold_dbn/KRAS_temp9.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.07 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/ct/KRAS.ct" 10 "/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/fold_dbn/KRAS_temp10.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.07 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AAAUCUUUUCUUCAACUUGAGUCUUUGAAGAUAGUUUUAAUUCUGCUUGUGACAUUAAAAGAUUAUUUGGGCCAGUUAUAGCUUAUUAGGUGUUGAAGAGACCAAGGUUGCAAGGCCA', '-structureDBN', '...(((((((..((.((((((((....(((.(((........))))))..)))...............((((........)))).)))))))..)))))))....((((....)))).', '-o', '/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_9.svg', '-title', 'KRAS, -12.7 ± 1.1\n kcal/mol, AUC: 0.38', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '4,6,7,8,9,11,12,17,18,19,21,22,24,25,26,27,30,32,34,35,36,37,38,41,42,44,45,47,48,49,50,51,55,56,61,63,64,66,67,68,69,70,71,75,76,77,79,81,83,84,86,87,89,90,91,92,93,94,95,98,100,106,107,108,109,110,114,115', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,5,39,10,78,111,112,116,57', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,33,103,73,80,113,52,85,117,29', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '2,3,72,74,13,14,15,16,82,20,23,88,28,31,96,97,99,101,102,40,104,105,43,46,53,54,118,58,59,60,62']
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Text: 'A', X: 421.59233609073954, Y: 214.72469020450603, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'G', X: 265.8111088442466, Y: 236.32705021313018, Width: 10.5, Height: 8
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Text: 'U', X: 261.99547435200304, Y: 253.40601193278985, Width: 10.5, Height: 8
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Text: 'G', X: 261.99547435200304, Y: 273.4060119327898, Width: 10.5, Height: 8
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Text: 'U', X: 272.37515766940476, Y: 287.4954511539209, Width: 10.5, Height: 8
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Text: 'U', X: 272.37515766940476, Y: 304.9954546777919, Width: 10.5, Height: 8
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Text: 'G', X: 261.99547435200304, Y: 319.0848938989229, Width: 10.5, Height: 8
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Text: 'A', X: 261.99547435200304, Y: 339.0848938989229, Width: 10.5, Height: 8
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Text: 'A', X: 261.99547435200304, Y: 359.0848938989229, Width: 10.5, Height: 8
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Text: 'G', X: 261.99547435200304, Y: 379.0848938989229, Width: 10.5, Height: 8
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Text: 'A', X: 261.99547435200304, Y: 399.0848938989229, Width: 10.5, Height: 8
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Text: 'G', X: 261.99547435200304, Y: 419.0848938989229, Width: 10.5, Height: 8
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Text: 'A', X: 261.99547435200304, Y: 439.0848938989229, Width: 10.5, Height: 8
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Text: 'C', X: 279.49547435200304, Y: 439.0848938989229, Width: 10.5, Height: 8
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Text: 'C', X: 296.99547435200304, Y: 439.0848938989229, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 314.49547435200304, Y: 439.0848938989229, Width: 10.5, Height: 8
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Text: 'A', X: 331.99547435200304, Y: 439.0848938989229, Width: 10.5, Height: 8
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Text: 'G', X: 349.49547435200304, Y: 439.0848938989229, Width: 10.5, Height: 8
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Text: 'G', X: 349.49547435200304, Y: 419.0848938989229, Width: 10.5, Height: 8
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Text: 'U', X: 349.49547435200304, Y: 399.0848938989229, Width: 10.5, Height: 8
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Text: 'U', X: 349.49547435200304, Y: 379.0848938989229, Width: 10.5, Height: 8
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Text: 'G', X: 345.9467399647639, Y: 361.9484492313318, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 356.99545647207003, Y: 348.37726228479795, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 374.495492231936, Y: 348.37726228479795, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 385.5442087392421, Y: 361.9484492313318, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 381.99547435200304, Y: 379.0848938989229, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 381.99547435200304, Y: 399.0848938989229, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 381.99547435200304, Y: 419.0848938989229, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 381.99547435200304, Y: 439.0848938989229, Width: 10.5, Height: 8
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Text: 'A', X: 399.49547435200304, Y: 439.0848938989229, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 177.74547435200301, Y: 459.0848938989229, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: 205.99690924913776, Y: 322.2462506294886, Width: 18.0, Height: 8
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Text: '20', X: 248.59926087497456, Y: 141.59042240079884, Width: 18.0, Height: 8
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Text: '30', X: 113.24799176742474, Y: 185.44934388186584, Width: 18.0, Height: 8
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Text: '40', X: 17.99702207386104, Y: 66.73344122918286, Width: 18.0, Height: 8
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Text: '50', X: 189.27105847410363, Y: 96.17678554266769, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 314.8454285868724, Y: 8.0, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 385.9990395003582, Y: 151.74222717336806, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 339.0260169918001, Y: 232.59913010983365, Width: 18.0, Height: 8
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Text: '90', X: 281.5799374379915, Y: 231.9663931149389, Width: 18.0, Height: 8
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Text: '100', X: 273.74547435200304, Y: 419.0848938989229, Width: 27.0, Height: 8
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Text: '110', X: 318.26783671203356, Y: 357.20316542569435, Width: 27.0, Height: 8
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Text: '118', X: 391.24547435200304, Y: 459.0848938989229, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'KRAS, -12.7 ± 1.1
 kcal/mol, AUC: 0.38', X: 152.78325968316972, Y: 471.88489389892294, Width: 133.5, Height: 23
Calculated bounding box: (4.75, 0.0, 434.3165193663394, 471.88489389892294)
Updated viewBox: -0.25 -5.0 439.5665193663394 481.88489389892294
Updated SVG: /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_final_9.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_final_9.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AAAUCUUUUCUUCAACUUGAGUCUUUGAAGAUAGUUUUAAUUCUGCUUGUGACAUUAAAAGAUUAUUUGGGCCAGUUAUAGCUUAUUAGGUGUUGAAGAGACCAAGGUUGCAAGGCCA', '-structureDBN', '(((.((..(((((((.........))))))).)).)))......((.((((((.....................))))))))......(((.(((....(((....))).))).))).', '-o', '/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_2.svg', '-title', 'KRAS, -14.9 ± 1.1\n kcal/mol, AUC: 0.637', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '4,6,7,8,9,11,12,17,18,19,21,22,24,25,26,27,30,32,34,35,36,37,38,41,42,44,45,47,48,49,50,51,55,56,61,63,64,66,67,68,69,70,71,75,76,77,79,81,83,84,86,87,89,90,91,92,93,94,95,98,100,106,107,108,109,110,114,115', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,5,39,10,78,111,112,116,57', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,33,103,73,80,113,52,85,117,29', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '2,3,72,74,13,14,15,16,82,20,23,88,28,31,96,97,99,101,102,40,104,105,43,46,53,54,118,58,59,60,62']Output file: /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_2.svg


Warning: Font Verdana not found. Using default font.
Text: 'A', X: 13.547135027745384, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'A', X: 13.547135027745384, Y: 308.8744882183055, Width: 10.5, Height: 8
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Text: 'A', X: 13.547135027745384, Y: 288.8744882183055, Width: 10.5, Height: 8
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Text: 'U', X: 6.868757876256126, Y: 272.69895178822276, Width: 10.5, Height: 8
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Text: 'C', X: 13.547135027745384, Y: 256.52341535814, Width: 10.5, Height: 8
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Text: 'U', X: 13.547135027745384, Y: 236.52341535813997, Width: 10.5, Height: 8
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Text: 'U', X: 4.75, Y: 221.39533890037637, Width: 10.5, Height: 8
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Text: 'U', X: 7.806701415516756, Y: 204.16441151776854, Width: 10.5, Height: 8
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Text: 'U', X: 21.27062118423123, Y: 192.98536207383341, Width: 10.5, Height: 8
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Text: 'C', X: 28.149980607988198, Y: 174.20573444390516, Width: 10.5, Height: 8
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Text: 'U', X: 35.029340031745164, Y: 155.42610681397684, Width: 10.5, Height: 8
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Text: 'U', X: 41.90869945550213, Y: 136.64647918404853, Width: 10.5, Height: 8
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Text: 'C', X: 48.788058879259125, Y: 117.86685155412027, Width: 10.5, Height: 8
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Text: 'A', X: 55.66741830301609, Y: 99.08722392419202, Width: 10.5, Height: 8
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Text: 'A', X: 62.54677772677306, Y: 80.3075962942637, Width: 10.5, Height: 8
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Text: 'C', X: 54.9217585583437, Y: 64.55613417885002, Width: 10.5, Height: 8
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Text: 'U', X: 56.25830683646868, Y: 47.10726273131877, Width: 10.5, Height: 8
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Text: 'U', X: 66.19335699255012, Y: 32.7008664266084, Width: 10.5, Height: 8
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Text: 'G', X: 82.02811041751193, Y: 25.250359057114224, Width: 10.5, Height: 8
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Text: 'A', X: 99.46114841220553, Y: 26.779627629928314, Width: 10.5, Height: 8
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Text: 'G', X: 113.7568875670948, Y: 36.87325522894321, Width: 10.5, Height: 8
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Text: 'U', X: 121.03197346113413, Y: 52.78936660473403, Width: 10.5, Height: 8
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Text: 'C', X: 119.31017131107751, Y: 70.20444264385276, Width: 10.5, Height: 8
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Text: 'U', X: 109.05919865983364, Y: 84.38777919755819, Width: 10.5, Height: 8
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Text: 'U', X: 93.06367262540653, Y: 91.48655535786878, Width: 10.5, Height: 8
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Text: 'U', X: 86.18431320164956, Y: 110.26618298779704, Width: 10.5, Height: 8
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Text: 'G', X: 79.30495377789259, Y: 129.04581061772535, Width: 10.5, Height: 8
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Text: 'A', X: 72.4255943541356, Y: 147.82543824765366, Width: 10.5, Height: 8
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Text: 'A', X: 65.54623493037863, Y: 166.60506587758192, Width: 10.5, Height: 8
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Text: 'G', X: 58.666875506621665, Y: 185.38469350751018, Width: 10.5, Height: 8
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Text: 'A', X: 51.7875160828647, Y: 204.1643211374385, Width: 10.5, Height: 8
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Text: 'U', X: 54.84427918643624, Y: 221.39528742864354, Width: 10.5, Height: 8
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Text: 'A', X: 46.047135027745384, Y: 236.52341535813997, Width: 10.5, Height: 8
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Text: 'G', X: 46.047135027745384, Y: 256.52341535813997, Width: 10.5, Height: 8
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Text: 'U', X: 52.72551217923464, Y: 272.69895178822276, Width: 10.5, Height: 8
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Text: 'U', X: 46.047135027745384, Y: 288.8744882183055, Width: 10.5, Height: 8
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Text: 'U', X: 46.047135027745384, Y: 308.8744882183055, Width: 10.5, Height: 8
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Text: 'U', X: 46.047135027745384, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'A', X: 63.547135027745384, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'A', X: 81.04713502774538, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'U', X: 98.54713502774538, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'U', X: 116.04713502774538, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'C', X: 133.54713502774538, Y: 328.8744882183055, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 151.04713502774538, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'G', X: 168.54713502774538, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'C', X: 168.54713502774538, Y: 308.8744882183055, Width: 10.5, Height: 8
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Text: 'U', X: 164.73151616116272, Y: 291.79545655687053, Width: 10.5, Height: 8
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Text: 'U', X: 175.45285712030216, Y: 277.96414722386817, Width: 10.5, Height: 8
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Text: 'G', X: 183.96447513554995, Y: 259.86573959329166, Width: 10.5, Height: 8
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Text: 'U', X: 192.47609315079774, Y: 241.76733196271516, Width: 10.5, Height: 8
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Text: 'G', X: 200.98771116604553, Y: 223.66892433213866, Width: 10.5, Height: 8
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Text: 'A', X: 209.49932918129332, Y: 205.5705167015622, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 218.0109471965411, Y: 187.47210907098577, Width: 10.5, Height: 8
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Text: 'A', X: 206.03889723044878, Y: 174.70808496794155, Width: 10.5, Height: 8
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Text: 'U', X: 197.8002563990764, Y: 159.26868443083026, Width: 10.5, Height: 8
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Text: 'U', X: 193.86254163300268, Y: 142.21744711165752, Width: 10.5, Height: 8
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Text: 'A', X: 194.4970015329708, Y: 124.72894367857225, Width: 10.5, Height: 8
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Text: 'A', X: 199.65993147070841, Y: 108.00786577815802, Width: 10.5, Height: 8
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Text: 'A', X: 208.9956841724686, Y: 93.20604112086392, Width: 10.5, Height: 8
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Text: 'A', X: 221.8611684019192, Y: 81.34309008684784, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 237.3701481560896, Y: 73.23618940419249, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 254.4542908341732, Y: 69.44378111280423, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 271.93675908973364, Y: 70.22710440942456, Width: 10.5, Height: 8
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Text: 'U', X: 288.61327700804077, Y: 75.53220024400525, Width: 10.5, Height: 8
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Text: 'A', X: 303.33508638304465, Y: 84.99362827679977, Width: 10.5, Height: 8
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Text: 'U', X: 315.0880786694074, Y: 97.9596401544128, Width: 10.5, Height: 8
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Text: 'U', X: 323.0626516227792, Y: 113.53707504931958, Width: 10.5, Height: 8
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Text: 'U', X: 326.7094785692818, Y: 130.65288484365794, Width: 10.5, Height: 8
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Text: 'G', X: 325.7773486505481, Y: 148.12805080877268, Width: 10.5, Height: 8
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Text: 'G', X: 320.33047142750036, Y: 164.75880004657756, Width: 10.5, Height: 8
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Text: 'G', X: 310.7440538191113, Y: 179.39952711633998, Width: 10.5, Height: 8
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Text: 'C', X: 297.6784540577295, Y: 191.04170880917923, Width: 10.5, Height: 8
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Text: 'C', X: 282.03369305997387, Y: 198.88337604369076, Width: 10.5, Height: 8
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Text: 'A', X: 264.88745668723965, Y: 202.3843573267074, Width: 10.5, Height: 8
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Text: 'G', X: 247.4208595962279, Y: 201.3034883457634, Width: 10.5, Height: 8
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Text: 'U', X: 238.9092415809801, Y: 219.40189597633986, Width: 10.5, Height: 8
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Text: 'U', X: 230.39762356573232, Y: 237.50030360691636, Width: 10.5, Height: 8
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Text: 'A', X: 221.88600555048453, Y: 255.59871123749286, Width: 10.5, Height: 8
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Text: 'U', X: 213.37438753523674, Y: 273.6971188680693, Width: 10.5, Height: 8
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Text: 'A', X: 204.86276951998894, Y: 291.7955264986458, Width: 10.5, Height: 8
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Text: 'G', X: 201.04713502774538, Y: 308.8744882183055, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 201.04713502774538, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'U', X: 218.54713502774538, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'U', X: 236.0471350277454, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'A', X: 253.5471350277454, Y: 328.87448821830554, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 271.0471350277454, Y: 328.87448821830554, Width: 10.5, Height: 8
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Text: 'U', X: 288.5471350277454, Y: 328.87448821830554, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 306.0471350277454, Y: 328.87448821830554, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 323.5471350277454, Y: 328.87448821830554, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 323.5471350277454, Y: 308.87448821830554, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 323.5471350277454, Y: 288.87448821830554, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 316.86875787625615, Y: 272.69895178822276, Width: 10.5, Height: 8
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Text: 'U', X: 323.5471350277454, Y: 256.52341535814, Width: 10.5, Height: 8
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Text: 'U', X: 323.5471350277454, Y: 236.52341535814003, Width: 10.5, Height: 8
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Text: 'G', X: 323.5471350277454, Y: 216.52341535814003, Width: 10.5, Height: 8
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Text: 'A', X: 312.18235677587256, Y: 203.86080122159717, Width: 10.5, Height: 8
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Text: 'A', X: 309.3143632185445, Y: 187.08955814183878, Width: 10.5, Height: 8
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Text: 'A', X: 356.0471350277454, Y: 236.52341535814003, Width: 10.5, Height: 8
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Text: 'A', X: 356.0471350277454, Y: 256.52341535814, Width: 10.5, Height: 8
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Text: 'G', X: 356.0471350277454, Y: 288.87448821830554, Width: 10.5, Height: 8
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Text: 'C', X: 356.0471350277454, Y: 308.87448821830554, Width: 10.5, Height: 8
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Text: 'C', X: 356.0471350277454, Y: 328.87448821830554, Width: 10.5, Height: 8
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Text: '40', X: 77.29713502774538, Y: 348.8744882183055, Width: 18.0, Height: 8
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Text: '50', X: 170.62768552022126, Y: 233.25571394746734, Width: 18.0, Height: 8
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Text: '60', X: 206.60028397440766, Y: 64.98767692494721, Width: 18.0, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_10.svg


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Text: '80', X: 220.63159811373387, Y: 287.43486940045455, Width: 18.0, Height: 8
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Text: '90', X: 299.7971350277454, Y: 308.87448821830554, Width: 18.0, Height: 8
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Text: '100', X: 327.8255118201455, Y: 143.67822789167758, Width: 27.0, Height: 8
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Text: '110', X: 378.36363224752455, Y: 209.89967500035823, Width: 27.0, Height: 8
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Text: '118', X: 365.2971350277454, Y: 348.87448821830554, Width: 27.0, Height: 8
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Text: 'KRAS, -14.9 ± 1.1
 kcal/mol, AUC: 0.637', X: 143.56405204510816, Y: 361.67448821830556, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 424.8781040902163, 361.67448821830556)
Updated viewBox: -0.25 -5.0 430.1281040902163 371.67448821830556
Updated SVG: /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_final_2.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_final_2.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AAAUCUUUUCUUCAACUUGAGUCUUUGAAGAUAGUUUUAAUUCUGCUUGUGACAUUAAAAGAUUAUUUGGGCCAGUUAUAGCUUAUUAGGUGUUGAAGAGACCAAGGUUGCAAGGCCA', '-structureDBN', '........((((((((((..((((((...((((.((........((.((((((.....................)))))))).....)).))))..))))))..)))))).))))...', '-o', '/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_10.svg', '-title', 'KRAS, -14.9 ± 1.2\n kcal/mol, AUC: 0.336', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '4,6,7,8,9,11,12,17,18,19,21,22,24,25,26,27,30,32,34,35,36,37,38,41,42,44,45,47,48,49,50,51,55,56,61,63,64,66,67,68,69,70,71,75,76,77,79,81,83,84,86,87,89,90,91,92,93,94,95,98,100,106,107,108,109,110,114,115', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,5,39,10,78,111,112,116,57', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,33,103,73,80,113,52,85,117,29', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '2,3,72,74,13,14,15,16,82,20,23,88,28,31,96,97,99,101,102,40,104,105,43,46,53,54,118,58,59,60,62']
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Text: 'U', X: 97.95232383605364, Y: 196.54136281567878, Width: 10.5, Height: 8
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Text: 'U', X: 159.2080402325671, Y: 92.44642369312453, Width: 10.5, Height: 8
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Text: 'U', X: 161.28283061466163, Y: 75.06984357607973, Width: 10.5, Height: 8
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Text: 'G', X: 225.59586574627204, Y: 24.91848016059805, Width: 10.5, Height: 8
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Text: 'C', X: 168.6117030189979, Y: 587.6623357990275, Width: 10.5, Height: 8
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Text: 'C', X: 184.00062229810345, Y: 595.9948722328616, Width: 10.5, Height: 8
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Text: 'A', X: 191.44817451960935, Y: 611.8310323074486, Width: 10.5, Height: 8
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Text: 'A', X: 188.05146363719453, Y: 628.9982206381358, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_3.svg


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Text: 'G', X: 205.0744473283329, Y: 665.1951545725346, Width: 10.5, Height: 8
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Text: 'U', X: 213.58593917390206, Y: 683.2936215397342, Width: 10.5, Height: 8
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Text: 'U', X: 222.09743101947123, Y: 701.3920885069335, Width: 10.5, Height: 8
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Text: 'G', X: 230.6089228650404, Y: 719.4905554741331, Width: 10.5, Height: 8
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Text: 'C', X: 241.33015177626282, Y: 733.3218696066791, Width: 10.5, Height: 8
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Text: 'A', X: 237.51451728401926, Y: 750.4008313263388, Width: 10.5, Height: 8
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Text: 'A', X: 237.51451728401926, Y: 770.4008313263388, Width: 10.5, Height: 8
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Text: 'G', X: 237.51451728401926, Y: 790.4008313263388, Width: 10.5, Height: 8
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Text: 'G', X: 237.51451728401926, Y: 810.4008313263388, Width: 10.5, Height: 8
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Text: 'C', X: 255.0145172840193, Y: 810.4008313263388, Width: 10.5, Height: 8
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Text: 'C', X: 272.5145172840193, Y: 810.4008313263388, Width: 10.5, Height: 8
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Text: 'A', X: 290.0145172840193, Y: 810.4008313263388, Width: 10.5, Height: 8
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Text: '1', X: 65.76451728401926, Y: 830.4008313263388, Width: 9.0, Height: 8
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Text: '20', X: 112.20394233018065, Y: 621.0972116515495, Width: 18.0, Height: 8
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Text: '30', X: 56.6092603558682, Y: 455.92267699123323, Width: 18.0, Height: 8
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Text: '40', X: -4.0, Y: 299.20992184332897, Width: 18.0, Height: 8
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Text: '50', X: 108.34445945978467, Y: 154.1149559444858, Width: 18.0, Height: 8
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Text: '60', X: 199.22118790166496, Y: 8.0, Width: 18.0, Height: 8
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Text: '70', X: 282.89564323710374, Y: 153.40448600408342, Width: 18.0, Height: 8
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Text: '80', X: 137.02475404979435, Y: 222.03559244392443, Width: 18.0, Height: 8
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Text: '90', X: 123.66816167951137, Y: 373.0755435822892, Width: 18.0, Height: 8
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Text: '100', X: 161.4372040436801, Y: 542.9539104460148, Width: 27.0, Height: 8
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Text: '110', X: 241.28172890972814, Y: 713.0154175300327, Width: 27.0, Height: 8
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Text: '118', X: 281.7645172840193, Y: 830.4008313263388, Width: 27.0, Height: 8
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Text: 'KRAS, -14.9 ± 1.2
 kcal/mol, AUC: 0.336', X: 90.13092660280574, Y: 843.2008313263387, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 0.0, 308.7645172840193, 843.2008313263387)
Updated viewBox: -9.0 -5.0 322.7645172840193 853.2008313263387
Updated SVG: /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_final_10.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_final_10.svg
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Text: 'U', X: 92.25, Y: 408.89792614406247, Width: 10.5, Height: 8
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Text: 'U', X: 127.25, Y: 408.89792614406247, Width: 10.5, Height: 8
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Text: 'U', X: 144.75, Y: 408.89792614406247, Width: 10.5, Height: 8
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Text: 'C', X: 144.75, Y: 388.89792614406247, Width: 10.5, Height: 8
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Text: 'U', X: 144.75, Y: 368.89792614406247, Width: 10.5, Height: 8
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Text: 'U', X: 144.75, Y: 348.89792614406247, Width: 10.5, Height: 8
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Text: 'A', X: 144.75, Y: 308.89792614406247, Width: 10.5, Height: 8
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Text: 'A', X: 144.75, Y: 288.89792614406247, Width: 10.5, Height: 8
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Text: 'U', X: 177.25, Y: 308.89792614406247, Width: 10.5, Height: 8
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Text: 'G', X: 177.25, Y: 328.89792614406247, Width: 10.5, Height: 8
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Text: 'A', X: 177.25, Y: 348.89792614406247, Width: 10.5, Height: 8
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Text: 'A', X: 177.25, Y: 368.89792614406247, Width: 10.5, Height: 8
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Text: 'G', X: 177.25, Y: 388.89792614406247, Width: 10.5, Height: 8
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Text: 'A', X: 177.25, Y: 408.89792614406247, Width: 10.5, Height: 8
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Text: 'G', X: 212.25, Y: 388.89792614406247, Width: 10.5, Height: 8
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Text: 'U', X: 212.25, Y: 348.89792614406247, Width: 10.5, Height: 8
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Text: 'A', X: 212.25, Y: 276.546853283897, Width: 10.5, Height: 8
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Text: 'U', X: 205.5716295660874, Y: 260.35376560835516, Width: 10.5, Height: 8
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Text: 'U', X: 212.27478317994087, Y: 244.17092124311986, Width: 10.5, Height: 8
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Text: 'G', X: 256.731617552222, Y: 209.15872891302936, Width: 10.5, Height: 8
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Text: 'C', X: 266.1103271865868, Y: 194.38394142706304, Width: 10.5, Height: 8
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Text: 'U', X: 282.8995958756587, Y: 71.1527211720271, Width: 10.5, Height: 8
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Text: 'U', X: 291.3695984397644, Y: 89.27064203961129, Width: 10.5, Height: 8
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Text: 'A', X: 299.8396010038701, Y: 107.38856290719548, Width: 10.5, Height: 8
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Text: 'U', X: 244.75, Y: 296.546853283897, Width: 10.5, Height: 8
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Text: 'A', X: 244.75, Y: 316.546853283897, Width: 10.5, Height: 8
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Text: 'U', X: 251.42837715148926, Y: 332.72238971397974, Width: 10.5, Height: 8
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Text: 'A', X: 244.75, Y: 348.89792614406247, Width: 10.5, Height: 8
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Text: 'G', X: 244.75, Y: 368.89792614406247, Width: 10.5, Height: 8
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Text: 'U', X: 244.75, Y: 408.89792614406247, Width: 10.5, Height: 8
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Text: 'A', X: 279.75, Y: 408.8979261440625, Width: 10.5, Height: 8
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Text: 'U', X: 297.25, Y: 408.8979261440625, Width: 10.5, Height: 8
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Text: 'U', X: 314.75, Y: 408.8979261440625, Width: 10.5, Height: 8
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Text: 'A', X: 332.25, Y: 408.8979261440625, Width: 10.5, Height: 8
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Text: 'G', X: 349.75, Y: 408.8979261440625, Width: 10.5, Height: 8
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Text: 'G', X: 349.75, Y: 388.8979261440625, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_4.svg


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Text: 'U', X: 349.75, Y: 336.546853283897, Width: 10.5, Height: 8
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Text: 'U', X: 349.75, Y: 316.546853283897, Width: 10.5, Height: 8
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Text: 'G', X: 349.75, Y: 296.546853283897, Width: 10.5, Height: 8
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  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: '20', X: 163.79337280821713, Y: 9.464355599532155, Width: 18.0, Height: 8
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Text: '30', X: 134.8993681088046, Y: 193.72840853079913, Width: 18.0, Height: 8
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Text: '40', X: 118.5, Y: 177.987770957672, Width: 18.0, Height: 8
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Text: '50', X: 178.93503407330738, Y: 89.52757282733666, Width: 18.0, Height: 8
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Text: '60', X: 188.5, Y: 277.987770957672, Width: 18.0, Height: 8
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Text: '70', X: 349.35786437626905, Y: 272.12990658140296, Width: 18.0, Height: 8
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Text: '80', X: 416.7151449265742, Y: 93.58184796499035, Width: 18.0, Height: 8
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Text: '90', X: 563.3280029766056, Y: 8.0, Width: 18.0, Height: 8
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Text: '100', X: 595.0035394066883, Y: 87.17837715148929, Width: 27.0, Height: 8
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Text: '110', X: 449.33825093886804, Y: 158.9892252247459, Width: 27.0, Height: 8
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Text: '118', X: 409.0, Y: 277.987770957672, Width: 27.0, Height: 8
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Text: 'KRAS, -14.4 ± 1.3
 kcal/mol, AUC: 0.602', X: 269.0654508410988, Y: 290.787770957672, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 675.8809016821976, 290.787770957672)
Updated viewBox: -0.25 -5.0 681.1309016821976 300.787770957672
Updated SVG: /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_final_4.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_final_4.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AAAUCUUUUCUUCAACUUGAGUCUUUGAAGAUAGUUUUAAUUCUGCUUGUGACAUUAAAAGAUUAUUUGGGCCAGUUAUAGCUUAUUAGGUGUUGAAGAGACCAAGGUUGCAAGGCCA', '-structureDBN', '(((.((..(((((((.........))))))).)).)))......((.((((((.(((((......)))))....))))))))......(((.(((....(((....))).))).))).', '-o', '/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_1.svg', '-title', 'KRAS, -14.4 ± 1.3\n kcal/mol, AUC: 0.656', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '4,6,7,8,9,11,12,17,18,19,21,22,24,25,26,27,30,32,34,35,36,37,38,41,42,44,45,47,48,49,50,51,55,56,61,63,64,66,67,68,69,70,71,75,76,77,79,81,83,84,86,87,89,90,91,92,93,94,95,98,100,106,107,108,109,110,114,115', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,5,39,10,78,111,112,116,57', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,33,103,73,80,113,52,85,117,29', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '2,3,72,74,13,14,15,16,82,20,23,88,28,31,96,97,99,101,102,40,104,105,43,46,53,54,118,58,59,60,62']Output file: /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_1.svg


Warning: Font Verdana not found. Using default font.
Text: 'A', X: 13.547135027745384, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'A', X: 13.547135027745384, Y: 308.8744882183055, Width: 10.5, Height: 8
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Text: 'A', X: 13.547135027745384, Y: 288.8744882183055, Width: 10.5, Height: 8
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Text: 'U', X: 6.868757876256126, Y: 272.69895178822276, Width: 10.5, Height: 8
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Text: 'C', X: 13.547135027745384, Y: 256.52341535814, Width: 10.5, Height: 8
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Text: 'U', X: 13.547135027745384, Y: 236.52341535813997, Width: 10.5, Height: 8
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Text: 'U', X: 4.75, Y: 221.39533890037637, Width: 10.5, Height: 8
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Text: 'U', X: 7.806701415516756, Y: 204.16441151776854, Width: 10.5, Height: 8
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Text: 'U', X: 21.27062118423123, Y: 192.98536207383341, Width: 10.5, Height: 8
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Text: 'C', X: 28.149980607988198, Y: 174.20573444390516, Width: 10.5, Height: 8
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Text: 'U', X: 35.029340031745164, Y: 155.42610681397684, Width: 10.5, Height: 8
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Text: 'U', X: 41.90869945550213, Y: 136.64647918404853, Width: 10.5, Height: 8
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Text: 'C', X: 48.788058879259125, Y: 117.86685155412027, Width: 10.5, Height: 8
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Text: 'A', X: 55.66741830301609, Y: 99.08722392419202, Width: 10.5, Height: 8
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Text: 'A', X: 62.54677772677306, Y: 80.3075962942637, Width: 10.5, Height: 8
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Text: 'C', X: 54.9217585583437, Y: 64.55613417885002, Width: 10.5, Height: 8
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Text: 'U', X: 56.25830683646868, Y: 47.10726273131877, Width: 10.5, Height: 8
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Text: 'U', X: 66.19335699255012, Y: 32.7008664266084, Width: 10.5, Height: 8
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Text: 'G', X: 82.02811041751193, Y: 25.250359057114224, Width: 10.5, Height: 8
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Text: 'A', X: 99.46114841220553, Y: 26.779627629928314, Width: 10.5, Height: 8
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Text: 'G', X: 113.7568875670948, Y: 36.87325522894321, Width: 10.5, Height: 8
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Text: 'U', X: 121.03197346113413, Y: 52.78936660473403, Width: 10.5, Height: 8
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Text: 'C', X: 119.31017131107751, Y: 70.20444264385276, Width: 10.5, Height: 8
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Text: 'U', X: 109.05919865983364, Y: 84.38777919755819, Width: 10.5, Height: 8
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Text: 'U', X: 93.06367262540653, Y: 91.48655535786878, Width: 10.5, Height: 8
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Text: 'U', X: 86.18431320164956, Y: 110.26618298779704, Width: 10.5, Height: 8
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Text: 'G', X: 79.30495377789259, Y: 129.04581061772535, Width: 10.5, Height: 8
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Text: 'A', X: 72.4255943541356, Y: 147.82543824765366, Width: 10.5, Height: 8
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Text: 'A', X: 65.54623493037863, Y: 166.60506587758192, Width: 10.5, Height: 8
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Text: 'G', X: 58.666875506621665, Y: 185.38469350751018, Width: 10.5, Height: 8
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Text: 'A', X: 51.7875160828647, Y: 204.1643211374385, Width: 10.5, Height: 8
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Text: 'U', X: 54.84427918643624, Y: 221.39528742864354, Width: 10.5, Height: 8
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Text: 'A', X: 46.047135027745384, Y: 236.52341535813997, Width: 10.5, Height: 8
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Text: 'G', X: 46.047135027745384, Y: 256.52341535813997, Width: 10.5, Height: 8
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Text: 'U', X: 52.72551217923464, Y: 272.69895178822276, Width: 10.5, Height: 8
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Text: 'U', X: 46.047135027745384, Y: 288.8744882183055, Width: 10.5, Height: 8
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Text: 'U', X: 46.047135027745384, Y: 308.8744882183055, Width: 10.5, Height: 8
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Text: 'U', X: 46.047135027745384, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'A', X: 63.547135027745384, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'A', X: 81.04713502774538, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'U', X: 98.54713502774538, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'U', X: 116.04713502774538, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'C', X: 133.54713502774538, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'U', X: 151.04713502774538, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'G', X: 168.54713502774538, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'C', X: 168.54713502774538, Y: 308.8744882183055, Width: 10.5, Height: 8
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Text: 'U', X: 164.73151616116272, Y: 291.79545655687053, Width: 10.5, Height: 8
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Text: 'U', X: 175.45285712030216, Y: 277.96414722386817, Width: 10.5, Height: 8
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Text: 'G', X: 183.96447513554995, Y: 259.86573959329166, Width: 10.5, Height: 8
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Text: 'U', X: 192.47609315079774, Y: 241.76733196271516, Width: 10.5, Height: 8
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Text: 'G', X: 200.98771116604553, Y: 223.66892433213866, Width: 10.5, Height: 8
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Text: 'A', X: 209.49932918129332, Y: 205.5705167015622, Width: 10.5, Height: 8
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Text: 'C', X: 218.0109471965411, Y: 187.47210907098577, Width: 10.5, Height: 8
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Text: 'A', X: 213.11440210273975, Y: 170.67116787374061, Width: 10.5, Height: 8
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Text: 'U', X: 218.2017101021303, Y: 153.92700243355648, Width: 10.5, Height: 8
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Text: 'U', X: 209.89647846161847, Y: 135.73296144763356, Width: 10.5, Height: 8
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Text: 'A', X: 201.59124682110664, Y: 117.53892046171075, Width: 10.5, Height: 8
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Text: 'A', X: 193.2860151805948, Y: 99.34487947578782, Width: 10.5, Height: 8
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Text: 'A', X: 184.98078354008297, Y: 81.15083848986501, Width: 10.5, Height: 8
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Text: 'A', X: 170.66268226088866, Y: 71.08897347497793, Width: 10.5, Height: 8
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Text: 'G', X: 166.198146596868, Y: 54.168067083068536, Width: 10.5, Height: 8
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Text: 'A', X: 173.6884545851036, Y: 38.352111909243376, Width: 10.5, Height: 8
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Text: 'U', X: 189.6082184022872, Y: 31.085044287144115, Width: 10.5, Height: 8
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Text: 'U', X: 206.4646431461009, Y: 35.78718174528126, Width: 10.5, Height: 8
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Text: 'A', X: 216.32408514933007, Y: 50.245416603106605, Width: 10.5, Height: 8
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Text: 'U', X: 214.54610014220762, Y: 67.65483707403325, Width: 10.5, Height: 8
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Text: 'U', X: 222.85133178271946, Y: 85.84887805995606, Width: 10.5, Height: 8
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Text: 'U', X: 231.1565634232313, Y: 104.04291904587899, Width: 10.5, Height: 8
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Text: 'G', X: 239.46179506374312, Y: 122.2369600318018, Width: 10.5, Height: 8
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Text: 'G', X: 247.76702670425493, Y: 140.43100101772472, Width: 10.5, Height: 8
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Text: 'G', X: 263.7505482739989, Y: 147.55680190110127, Width: 10.5, Height: 8
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Text: 'C', X: 273.2363237887878, Y: 162.26292521362086, Width: 10.5, Height: 8
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Text: 'C', X: 273.1368071318466, Y: 179.76264225233302, Width: 10.5, Height: 8
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Text: 'A', X: 263.4843902006236, Y: 194.35993129468062, Width: 10.5, Height: 8
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Text: 'G', X: 247.4208595962279, Y: 201.3034883457634, Width: 10.5, Height: 8
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Text: 'U', X: 238.9092415809801, Y: 219.40189597633986, Width: 10.5, Height: 8
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Text: 'U', X: 230.39762356573232, Y: 237.50030360691636, Width: 10.5, Height: 8
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Text: 'A', X: 221.88600555048453, Y: 255.59871123749286, Width: 10.5, Height: 8
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Text: 'U', X: 213.37438753523674, Y: 273.6971188680693, Width: 10.5, Height: 8
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Text: 'A', X: 204.86276951998894, Y: 291.7955264986458, Width: 10.5, Height: 8
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Text: 'G', X: 201.04713502774538, Y: 308.8744882183055, Width: 10.5, Height: 8
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Text: 'C', X: 201.04713502774538, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'U', X: 218.54713502774538, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'U', X: 236.0471350277454, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'A', X: 253.5471350277454, Y: 328.87448821830554, Width: 10.5, Height: 8
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Text: 'U', X: 271.0471350277454, Y: 328.87448821830554, Width: 10.5, Height: 8
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Text: 'U', X: 288.5471350277454, Y: 328.87448821830554, Width: 10.5, Height: 8
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Text: 'A', X: 306.0471350277454, Y: 328.87448821830554, Width: 10.5, Height: 8
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Text: 'G', X: 323.5471350277454, Y: 328.87448821830554, Width: 10.5, Height: 8
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Text: 'G', X: 323.5471350277454, Y: 308.87448821830554, Width: 10.5, Height: 8
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Text: 'U', X: 323.5471350277454, Y: 288.87448821830554, Width: 10.5, Height: 8
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Text: 'G', X: 316.86875787625615, Y: 272.69895178822276, Width: 10.5, Height: 8
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Text: 'U', X: 323.5471350277454, Y: 256.52341535814, Width: 10.5, Height: 8
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Text: 'U', X: 323.5471350277454, Y: 236.52341535814003, Width: 10.5, Height: 8
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Text: 'G', X: 323.5471350277454, Y: 216.52341535814003, Width: 10.5, Height: 8
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Text: 'A', X: 312.18235677587256, Y: 203.86080122159717, Width: 10.5, Height: 8
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Text: 'A', X: 309.3143632185445, Y: 187.08955814183878, Width: 10.5, Height: 8
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Text: 'G', X: 315.82560662605283, Y: 171.37002599951984, Width: 10.5, Height: 8
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Text: 'A', X: 329.71264402946383, Y: 161.53894398168075, Width: 10.5, Height: 8
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Text: 'G', X: 346.7025761215426, Y: 160.6212354267633, Width: 10.5, Height: 8
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Text: 'A', X: 360.84471174527357, Y: 146.47909980303234, Width: 10.5, Height: 8
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Text: 'C', X: 374.9868473690045, Y: 132.3369641793014, Width: 10.5, Height: 8
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Text: 'C', X: 384.59480944903964, Y: 117.710333799573, Width: 10.5, Height: 8
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Text: 'A', X: 402.00371013340794, Y: 115.92667784665252, Width: 10.5, Height: 8
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Text: 'A', X: 414.3781040902163, Y: 128.3010718034608, Width: 10.5, Height: 8
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Text: 'G', X: 412.5944481372958, Y: 145.70997248782908, Width: 10.5, Height: 8
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Text: 'G', X: 397.96781775756733, Y: 155.3179345678642, Width: 10.5, Height: 8
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Text: 'U', X: 383.8256821338364, Y: 169.46007019159515, Width: 10.5, Height: 8
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Text: 'U', X: 369.68354651010543, Y: 183.6022058153261, Width: 10.5, Height: 8
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Text: 'G', X: 368.1360415972988, Y: 202.24600635305643, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 356.0471350277454, Y: 216.52341535814003, Width: 10.5, Height: 8
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Text: 'A', X: 356.0471350277454, Y: 236.52341535814003, Width: 10.5, Height: 8
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Text: 'A', X: 356.0471350277454, Y: 256.52341535814, Width: 10.5, Height: 8
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Text: 'G', X: 362.72551217923467, Y: 272.69895178822276, Width: 10.5, Height: 8
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Text: 'G', X: 356.0471350277454, Y: 288.87448821830554, Width: 10.5, Height: 8
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Text: 'C', X: 356.0471350277454, Y: 308.87448821830554, Width: 10.5, Height: 8
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Text: 'C', X: 356.0471350277454, Y: 328.87448821830554, Width: 10.5, Height: 8
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Text: 'A', X: 373.5471350277454, Y: 328.87448821830554, Width: 10.5, Height: 8
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Text: '1', X: 14.297135027745384, Y: 348.8744882183055, Width: 9.0, Height: 8
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Text: '10', X: 5.620352978059895, Y: 167.32637502014822, Width: 18.0, Height: 8
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Text: '20', X: 102.5905078359625, Y: 8.0, Width: 18.0, Height: 8
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Text: '30', X: 73.69650313654996, Y: 192.26405293126712, Width: 18.0, Height: 8
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Text: '40', X: 77.29713502774538, Y: 348.8744882183055, Width: 18.0, Height: 8
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Text: '50', X: 170.62768552022126, Y: 233.25571394746734, Width: 18.0, Height: 8
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Text: '60', X: 150.49800497125136, Y: 82.51518761077398, Width: 18.0, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_7.svg


Warning: Font Verdana not found. Using default font.
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Text: '80', X: 220.63159811373387, Y: 287.43486940045455, Width: 18.0, Height: 8
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Text: '90', X: 299.7971350277454, Y: 308.87448821830554, Width: 18.0, Height: 8
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Text: '100', X: 327.8255118201455, Y: 143.67822789167758, Width: 27.0, Height: 8
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Text: '110', X: 378.36363224752455, Y: 209.89967500035823, Width: 27.0, Height: 8
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Text: '118', X: 365.2971350277454, Y: 348.87448821830554, Width: 27.0, Height: 8
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Text: 'KRAS, -14.4 ± 1.3
 kcal/mol, AUC: 0.656', X: 143.56405204510816, Y: 361.67448821830556, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 424.8781040902163, 361.67448821830556)
Updated viewBox: -0.25 -5.0 430.1281040902163 371.67448821830556
Updated SVG: /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_final_1.svg
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Text: 'A', X: 159.75, Y: 676.8003263832682, Width: 10.5, Height: 8
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Text: 'G', X: 177.25, Y: 676.8003263832682, Width: 10.5, Height: 8
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Text: 'G', X: 177.25, Y: 656.8003263832682, Width: 10.5, Height: 8
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Text: 'U', X: 177.25, Y: 636.8003263832682, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_5.svg


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Text: 'G', X: 209.75, Y: 616.8003263832682, Width: 10.5, Height: 8
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Text: 'KRAS, -11.9 ± 1.2
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Updated SVG: /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_final_7.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_final_7.svg
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Text: 'U', X: 46.04713502774541, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'G', X: 168.5471350277454, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'C', X: 186.0471350277454, Y: 328.8744882183055, Width: 10.5, Height: 8
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Text: 'U', X: 186.0471350277454, Y: 308.8744882183055, Width: 10.5, Height: 8
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Text: 'U', X: 186.0471350277454, Y: 288.87448821830554, Width: 10.5, Height: 8
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Text: 'A', X: 186.0471350277454, Y: 208.87448821830554, Width: 10.5, Height: 8
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Text: 'C', X: 186.0471350277454, Y: 188.8744882183055, Width: 10.5, Height: 8
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Text: 'A', X: 170.77146764627653, Y: 180.33611395262028, Width: 10.5, Height: 8
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Text: 'U', X: 159.3988728114632, Y: 167.0352141419546, Width: 10.5, Height: 8
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Text: 'U', X: 153.33734808119667, Y: 150.61852242301939, Width: 10.5, Height: 8
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Text: 'A', X: 170.77146595197755, Y: 103.40093443838771, Width: 10.5, Height: 8
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Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_6.svg


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Text: 'KRAS, -14.0 ± 1.4
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Updated SVG: /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_final_5.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_final_5.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AAAUCUUUUCUUCAACUUGAGUCUUUGAAGAUAGUUUUAAUUCUGCUUGUGACAUUAAAAGAUUAUUUGGGCCAGUUAUAGCUUAUUAGGUGUUGAAGAGACCAAGGUUGCAAGGCCA', '-structureDBN', '...(((((((..((.(((((((((....(((((((((((((((.......)).)))))..)))))))))))).............)))))))..)))))))....((((....)))).', '-o', '/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_6.svg', '-title', 'KRAS, -14.0 ± 2.4\n kcal/mol, AUC: 0.52', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '4,6,7,8,9,11,12,17,18,19,21,22,24,25,26,27,30,32,34,35,36,37,38,41,42,44,45,47,48,49,50,51,55,56,61,63,64,66,67,68,69,70,71,75,76,77,79,81,83,84,86,87,89,90,91,92,93,94,95,98,100,106,107,108,109,110,114,115', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,5,39,10,78,111,112,116,57', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,33,103,73,80,113,52,85,117,29', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '2,3,72,74,13,14,15,16,82,20,23,88,28,31,96,97,99,101,102,40,104,105,43,46,53,54,118,58,59,60,62']
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Text: 'G', X: 358.9930885129596, Y: 492.8654535263304, Width: 10.5, Height: 8
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Text: 'A', X: 358.9930885129596, Y: 512.8654535263304, Width: 10.5, Height: 8
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Text: 'C', X: 478.9930885129596, Y: 552.8654535263304, Width: 10.5, Height: 8
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Warning: Font Verdana not found. Using default font.
Text: 'KRAS, -14.0 ± 2.4
 kcal/mol, AUC: 0.52', X: 189.1215442564798, Y: 585.6654535263303, Width: 133.5, Height: 23/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_8.svg


Calculated bounding box: (4.75, 0.0, 515.2430885129596, 585.6654535263303)
Updated viewBox: -0.25 -5.0 520.4930885129596 595.6654535263303
Updated SVG: /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_final_6.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_final_6.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AAAUCUUUUCUUCAACUUGAGUCUUUGAAGAUAGUUUUAAUUCUGCUUGUGACAUUAAAAGAUUAUUUGGGCCAGUUAUAGCUUAUUAGGUGUUGAAGAGACCAAGGUUGCAAGGCCA', '-structureDBN', '.((((((.(((((((.........)))))))..(((.(((......))).))).....)))))).....((((..((.((((((....(((.((...)).))).)))))).)))))).', '-o', '/disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_8.svg', '-title', 'KRAS, -12.1 ± 1.2\n kcal/mol, AUC: 0.503', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '4,6,7,8,9,11,12,17,18,19,21,22,24,25,26,27,30,32,34,35,36,37,38,41,42,44,45,47,48,49,50,51,55,56,61,63,64,66,67,68,69,70,71,75,76,77,79,81,83,84,86,87,89,90,91,92,93,94,95,98,100,106,107,108,109,110,114,115', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,5,39,10,78,111,112,116,57', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,33,103,73,80,113,52,85,117,29', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '2,3,72,74,13,14,15,16,82,20,23,88,28,31,96,97,99,101,102,40,104,105,43,46,53,54,118,58,59,60,62']
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Warning: Font Verdana not found. Using default font.
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Text: 'KRAS, -12.1 ± 1.2
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Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/45bd8904-3736-430e-b8c3-0ccccb6bcde1/final_image/KRAS_fold_final_8.svg
