Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 97% [================================================= ] |                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/510a1251-e964-4d85-99ef-476a722617d9/final_image/FLNB_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 158.74 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 158.74 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 158.74 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.35 MB
Based on canonical annotations, the following gene is in your area of interest: FLNB(+)
write fasta - Elapsed time since the previous call: 0.58 seconds
write fasta - Current memory usage: 172.35 MB
Length of region: 97 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.18 seconds
write dat - Current memory usage: 175.89 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/510a1251-e964-4d85-99ef-476a722617d9/fasta/FLNB.fasta" "/disk1/www/rails/humanrnamap/public/result/510a1251-e964-4d85-99ef-476a722617d9/ct/FLNB.ct" --SHAPE "FLNB.dat"

fold - Elapsed time since the previous call: 0.14 seconds
fold - Current memory usage: 175.89 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/510a1251-e964-4d85-99ef-476a722617d9/ct/FLNB.ct" "/disk1/www/rails/humanrnamap/public/result/510a1251-e964-4d85-99ef-476a722617d9/fold_FE/FLNB.txt" -sh "FLNB.dat"

efn2 - Elapsed time since the previous call: 0.51 seconds
efn2 - Current memory usage: 175.89 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/510a1251-e964-4d85-99ef-476a722617d9/ct/FLNB.ct" 1 "/disk1/www/rails/humanrnamap/public/result/510a1251-e964-4d85-99ef-476a722617d9/fold_dbn/FLNB_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.89 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'ACGACCAGAAUGAUGGAUCGUGUGAUGUCAAAUACUGGCCCAAGGAGCCUGGCGAAUAUGCUGUUCACAUCAUGUGUGACGACGAAGACAUCAAGGA', '-structureDBN', '(((((((......))).)))).(((((((.......(((.......))).(((......)))((.(((((...)))))))......)))))))....', '-o', '/disk1/www/rails/humanrnamap/public/result/510a1251-e964-4d85-99ef-476a722617d9/final_image/FLNB_fold_1.svg', '-title', 'FLNB, -20.5 ± 1.0\n kcal/mol, AUC: 0.432', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,8,11,12,14,15,16,18,20,21,22,23,24,26,27,28,33,36,37,38,44,45,47,50,51,52,54,57,59,60,62,63,64,65,70,73,74,75,76,77,78,81,84,87,91,95,96', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '32,1,7,40,46,17,49,56,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '2,67,4,69,9,10,79,82,86,88,25,89,90,92,31,41,42,53,55,61', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '66,68,5,6,71,72,13,80,19,83,85,29,93,94,97,34,35,39,43,48,58']
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Text: 'FLNB, -20.5 ± 1.0
 kcal/mol, AUC: 0.432', X: 102.37757603094767, Y: 385.44272867583203, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 340.6119402212531, 385.44272867583203)
Updated viewBox: -9.0 0.0 354.6119402212531 390.44272867583203
Updated SVG: /disk1/www/rails/humanrnamap/public/result/510a1251-e964-4d85-99ef-476a722617d9/final_image/FLNB_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/510a1251-e964-4d85-99ef-476a722617d9/final_image/FLNB_fold_final_1.svg
