Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
  0% [=                                                 ] /                     
  4% [===                                               ] -                     
  9% [=====                                             ] \                     
 13% [=======                                           ] |                     
 18% [==========                                        ] /                     
 22% [============                                      ] -                     
 27% [==============                                    ] \                     
 32% [=================                                 ] |                     
 36% [===================                               ] /                     
 41% [=====================                             ] -                     
 45% [=======================                           ] \                     
 50% [==========================                        ] |                     
 55% [============================                      ] /                     
 59% [==============================                    ] -                     
 64% [=================================                 ] \                     
 68% [===================================               ] |                     
 73% [=====================================             ] /                     
 77% [=======================================           ] -                     
 82% [==========================================        ] \                     
 87% [============================================      ] |                     
 91% [==============================================    ] /                     
 96% [================================================= ] -                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_5.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 156.80 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 156.80 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 156.80 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 170.42 MB
Based on canonical annotations, the following gene is in your area of interest: MALAT1(+)
write fasta - Elapsed time since the previous call: 0.53 seconds
write fasta - Current memory usage: 170.42 MB
Length of region: 109 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.21 seconds
write dat - Current memory usage: 173.82 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/fasta/MALAT1.fasta" "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/ct/MALAT1.ct" --SHAPE "MALAT1.dat"

fold - Elapsed time since the previous call: 0.15 seconds
fold - Current memory usage: 173.82 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/ct/MALAT1.ct" "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/fold_FE/MALAT1.txt" -sh "MALAT1.dat"

efn2 - Elapsed time since the previous call: 0.57 seconds
efn2 - Current memory usage: 173.82 MB
This region has 11 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/ct/MALAT1.ct" 1 "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/fold_dbn/MALAT1_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.82 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/ct/MALAT1.ct" 2 "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/fold_dbn/MALAT1_temp2.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.82 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/ct/MALAT1.ct" 3 "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/fold_dbn/MALAT1_temp3.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.82 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/ct/MALAT1.ct" 4 "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/fold_dbn/MALAT1_temp4.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.82 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/ct/MALAT1.ct" 5 "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/fold_dbn/MALAT1_temp5.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 173.82 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/ct/MALAT1.ct" 6 "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/fold_dbn/MALAT1_temp6.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.82 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/ct/MALAT1.ct" 7 "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/fold_dbn/MALAT1_temp7.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.82 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/ct/MALAT1.ct" 8 "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/fold_dbn/MALAT1_temp8.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.82 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/ct/MALAT1.ct" 9 "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/fold_dbn/MALAT1_temp9.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.82 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/ct/MALAT1.ct" 10 "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/fold_dbn/MALAT1_temp10.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.82 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/ct/MALAT1.ct" 11 "/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/fold_dbn/MALAT1_temp11.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.82 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGCAUUGAGGCAGCCAGCGCAGGGGCUUCUGCUGAGGGGGCAGGCGGAGCUUGAGGAAACCGCAGAUAAGUUUUUUUCUCUUUGAAAGAUAGAGAUUAAUACAACUAC', '-structureDBN', '((((.(((..((.....)).)))..))))(((((.....)))))((((............))))......((.((..(((((.........)))))..)).))......', '-o', '/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_5.svg', '-title', 'MALAT1, -24.2 ± 1.4\n kcal/mol, AUC: 0.705', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,6,7,8,10,11,14,18,20,23,24,25,26,28,29,31,32,34,35,37,38,39,40,41,44,45,47,48,50,52,53,54,56,57,63,66,68,71,72,73,74,75,76,77,78,80,82,83,84,85,89,91,93,95,97,98,101,107', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,33,4,42,79,16,27,92,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '64,65,5,69,70,9,12,13,15,17,21,22,88,94,99,100,43,55,58,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,81,19,86,87,90,96,36,102,103,104,105,106,108,109,46,49,51,59,60,61']
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 55.46273203210886, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 55.46273203210886, Y: 253.98908198377742, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 55.46273203210886, Y: 233.98908198377742, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 55.46273203210886, Y: 213.98908198377742, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 46.6656015698759, Y: 198.8610312618732, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 49.72227214146493, Y: 181.630123333652, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 42.84279694174704, Y: 162.8505381152169, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 35.96332174202915, Y: 144.0709528967818, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 22.49930677622292, Y: 132.8919412678163, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 19.442543672651407, Y: 115.66097497661124, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 28.239687831342266, Y: 100.53284704711476, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 28.239687831342266, Y: 80.53284704711476, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 21.59151822652434, Y: 64.34480674746013, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 28.31773748256377, Y: 48.18904052120678, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 44.489687831342266, Y: 41.501826620462225, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 60.66163818012073, Y: 48.18904052120678, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 67.38785743616016, Y: 64.34480674746013, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 60.739687831342266, Y: 80.53284704711476, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 60.739687831342266, Y: 100.53284704711476, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 69.53681829357522, Y: 115.66089776901899, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 66.4801477219862, Y: 132.8918056972402, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 73.35962292170409, Y: 151.6713909156753, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 80.23909812142197, Y: 170.4509761341104, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 93.7031130872282, Y: 181.62998776307595, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 96.75987619079972, Y: 198.86095405428094, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 87.96273203210886, Y: 213.98908198377742, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 87.96273203210886, Y: 233.98908198377742, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 87.96273203210886, Y: 253.98908198377742, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 87.96273203210886, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 105.46273203210886, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 105.46273203210886, Y: 253.98908198377742, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 105.46273203210886, Y: 233.98908198377742, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 105.46273203210886, Y: 213.98908198377742, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 105.46273203210886, Y: 193.98908198377742, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 98.81456242729094, Y: 177.8010416841228, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 105.54078168333037, Y: 161.6452754578694, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 121.71273203210886, Y: 154.95806155712495, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 137.88468238088734, Y: 161.6452754578694, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 144.61090163692674, Y: 177.8010416841228, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 137.96273203210885, Y: 193.98908198377742, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 137.96273203210885, Y: 213.98908198377742, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 137.96273203210885, Y: 233.98908198377742, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 137.96273203210885, Y: 253.98908198377742, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 137.96273203210885, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 155.46273203210885, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 155.46273203210885, Y: 253.98908198377742, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 155.46273203210885, Y: 233.98908198377742, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 155.46273203210885, Y: 213.98908198377742, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 141.1221088076814, Y: 203.9593425880062, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 132.14578633905228, Y: 188.93686670181293, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 130.10783172022911, Y: 171.55596086282713, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 135.36561594760622, Y: 154.86450041652648, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 146.99714617070046, Y: 141.7894611629977, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 162.96274422051627, Y: 134.62365166763774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 180.46271984370142, Y: 134.62365166763774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 196.42831789351723, Y: 141.7894611629977, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 208.05984811661148, Y: 154.86450041652648, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 213.31763234398858, Y: 171.5559608628271, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 211.27967772516544, Y: 188.93686670181293, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 202.30335525653632, Y: 203.95934258800617, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 187.96273203210885, Y: 213.98908198377742, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 187.96273203210885, Y: 233.98908198377742, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 187.96273203210885, Y: 253.98908198377742, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 187.96273203210885, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 205.46273203210885, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 222.96273203210885, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 240.46273203210885, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 257.9627320321089, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 275.4627320321089, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 292.9627320321089, Y: 273.98908198377745, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 310.4627320321089, Y: 273.98908198377745, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

Warning: Font Verdana not found. Using default font.
Text: 'U', X: 310.4627320321089, Y: 253.98908198377742, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 303.7843548806196, Y: 237.81354555369467, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 310.4627320321089, Y: 221.6380091236119, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 310.4627320321089, Y: 201.6380091236119, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 300.0830487147071, Y: 187.54856990248084, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 300.0830487147071, Y: 170.04856637860988, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 310.4627320321089, Y: 155.9591271574788, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 310.4627320321089, Y: 135.95912715747878, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 310.4627320321089, Y: 115.95912715747878, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 310.4627320321089, Y: 95.95912715747878, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 310.4627320321089, Y: 75.95912715747878, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 297.8849825323193, Y: 63.791559873392345, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 293.1381235696249, Y: 46.94766465641493, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 297.511611781359, Y: 30.002987705996134, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 309.81741452377975, Y: 17.56045199349535, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 326.7127320321089, Y: 13.0, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 343.608049540438, Y: 17.56045199349535, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 355.9138522828587, Y: 30.002987705996247, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 360.28734049459285, Y: 46.94766465641493, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 355.5404815318984, Y: 63.791559873392345, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 342.9627320321089, Y: 75.95912715747878, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 342.9627320321089, Y: 95.95912715747878, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 342.9627320321089, Y: 115.95912715747878, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 342.9627320321089, Y: 135.95912715747878, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 342.9627320321089, Y: 155.9591271574788, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 353.34241534951065, Y: 170.04856637860988, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 353.34241534951065, Y: 187.5485699024808, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 342.9627320321089, Y: 201.6380091236119, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 342.9627320321089, Y: 221.6380091236119, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 349.64110918359813, Y: 237.81354555369467, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 342.9627320321089, Y: 253.98908198377745, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 342.9627320321089, Y: 273.98908198377745, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 360.4627320321089, Y: 273.98908198377745, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 377.9627320321089, Y: 273.98908198377745, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 395.4627320321089, Y: 273.98908198377745, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 412.9627320321089, Y: 273.98908198377745, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 430.4627320321089, Y: 273.98908198377745, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 447.9627320321089, Y: 273.98908198377745, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 56.21273203210886, Y: 293.9890819837774, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: -4.0, Y: 112.16759213175769, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: 85.47935119780954, Y: 112.1674542220801, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: 101.71273203210886, Y: 293.9890819837774, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 154.21271747423532, Y: 193.96495078551425, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 109.45981987046257, Y: 195.37341654629063, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 213.19342932555077, Y: 217.5853556238788, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 289.2127320321089, Y: 293.98908198377745, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 286.7127320321089, Y: 115.95912715747878, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 376.53611953543594, Y: 47.16865532485082, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '100', X: 354.7127320321089, Y: 221.6380091236119, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '109', X: 439.7127320321089, Y: 293.98908198377745, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'MALAT1, -24.2 ± 1.4
 kcal/mol, AUC: 0.705', X: 167.70263785238012, Y: 306.78908198377746, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 466.7127320321089, 306.78908198377746)
Updated viewBox: -9.0 0.0 480.7127320321089 311.78908198377746
Updated SVG: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_5.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_5.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGCAUUGAGGCAGCCAGCGCAGGGGCUUCUGCUGAGGGGGCAGGCGGAGCUUGAGGAAACCGCAGAUAAGUUUUUUUCUCUUUGAAAGAUAGAGAUUAAUACAACUAC', '-structureDBN', '..((......))((((........)))).(((((.....)))))((((............))))......((.((..(((((.........)))))..)).))......', '-o', '/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_7.svg', '-title', 'MALAT1, -24.1 ± 1.0\n kcal/mol, AUC: 0.702', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,6,7,8,10,11,14,18,20,23,24,25,26,28,29,31,32,34,35,37,38,39,40,41,44,45,47,48,50,52,53,54,56,57,63,66,68,71,72,73,74,75,76,77,78,80,82,83,84,85,89,91,93,95,97,98,101,107', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,33,4,42,79,16,27,92,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '64,65,5,69,70,9,12,13,15,17,21,22,88,94,99,100,43,55,58,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,81,19,86,87,90,96,36,102,103,104,105,106,108,109,46,49,51,59,60,61']Output file: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_7.svg


Warning: Font Verdana not found. Using default font.
Text: 'A', X: 4.75, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 22.25, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 39.75, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 39.75, Y: 253.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 30.903099908497154, Y: 238.89002537119254, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 33.868305023393106, Y: 221.64309200767346, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 47.25001211687879, Y: 210.36572231952243, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 64.74998788312121, Y: 210.36572231952243, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 78.1316949766069, Y: 221.64309200767346, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 81.09690009150285, Y: 238.89002537119256, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 72.25, Y: 253.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 72.25, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 89.75, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 89.75, Y: 253.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 89.75, Y: 233.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 89.75, Y: 213.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 78.09493192571631, Y: 200.93496779559717, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 75.4117893094517, Y: 183.6418693238074, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 82.56324539329538, Y: 167.6697941632314, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 97.24999272779968, Y: 158.15401979712416, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 114.75000727220032, Y: 158.15401979712416, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 129.43675460670465, Y: 167.66979416323142, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 136.5882106905483, Y: 183.6418693238074, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 133.9050680742837, Y: 200.93496779559717, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 122.25, Y: 213.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 122.25, Y: 233.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 122.25, Y: 253.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 122.25, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 139.75, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 157.25, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 157.25, Y: 253.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 157.25, Y: 233.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 157.25, Y: 213.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 157.25, Y: 193.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 150.60183039518208, Y: 177.80104168412274, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 157.32804965122153, Y: 161.6452754578693, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 173.5, Y: 154.95806155712486, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 189.6719503487785, Y: 161.6452754578693, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 196.39816960481792, Y: 177.80104168412274, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 189.75, Y: 193.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 189.75, Y: 213.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 189.75, Y: 233.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 189.75, Y: 253.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 189.75, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 207.25, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 207.25, Y: 253.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 207.25, Y: 233.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 207.25, Y: 213.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 192.90937677557255, Y: 203.95934258800608, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 183.9330543069434, Y: 188.93686670181282, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 181.89509968812027, Y: 171.55596086282705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 187.15288391549737, Y: 154.8645004165264, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 198.78441413859161, Y: 141.78946116299764, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 214.75001218840742, Y: 134.62365166763763, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 232.24998781159258, Y: 134.62365166763763, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 248.21558586140839, Y: 141.78946116299764, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 259.84711608450266, Y: 154.8645004165264, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 265.10490031187976, Y: 171.55596086282702, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 263.0669456930566, Y: 188.93686670181282, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 254.09062322442747, Y: 203.95934258800608, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 239.75, Y: 213.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 239.75, Y: 233.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 239.75, Y: 253.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 239.75, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 257.25, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

Text: 'G', X: 274.75, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 292.25, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 309.75, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 327.25, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 344.75, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 362.25, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 362.25, Y: 253.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 355.57162284851074, Y: 237.81354555369458, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 362.25, Y: 221.63800912361182, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 362.25, Y: 201.6380091236118, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 351.87031668259823, Y: 187.54856990248075, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 351.87031668259823, Y: 170.0485663786098, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 362.25, Y: 155.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 362.25, Y: 135.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 362.25, Y: 115.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 362.25, Y: 95.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 362.25, Y: 75.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 349.67225050021045, Y: 63.79155987339223, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 344.925391537516, Y: 46.947664656414815, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 349.29887974925015, Y: 30.002987705996134, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 361.60468249167087, Y: 17.56045199349535, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 378.5, Y: 13.0, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 395.39531750832913, Y: 17.56045199349535, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 407.70112025074985, Y: 30.002987705996134, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 412.074608462484, Y: 46.947664656414815, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 407.32774949978955, Y: 63.79155987339223, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 394.75, Y: 75.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 394.75, Y: 95.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 394.75, Y: 115.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 394.75, Y: 135.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 394.75, Y: 155.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 405.12968331740177, Y: 170.04856637860976, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 405.12968331740177, Y: 187.54856990248072, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 394.75, Y: 201.6380091236118, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 394.75, Y: 221.6380091236118, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 401.42837715148926, Y: 237.81354555369455, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 394.75, Y: 253.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 394.75, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 412.25, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 429.75, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 447.25, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 464.75, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 482.25, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 499.75, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 5.5, Y: 293.9890819837773, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: 97.02423341901459, Y: 242.46809092648851, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: 87.82975476678892, Y: 138.97464542084398, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: 139.35786437626905, Y: 288.13121760750823, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 205.99998544212647, Y: 193.96495078551413, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 161.24708783835368, Y: 195.37341654629049, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 264.98069729344195, Y: 217.5853556238787, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 341.0, Y: 293.98908198377734, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 338.5, Y: 115.95912715747872, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 428.32338750332707, Y: 47.168655324850704, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '100', X: 406.5, Y: 221.6380091236118, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '109', X: 491.5, Y: 293.98908198377734, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'MALAT1, -24.1 ± 1.0
 kcal/mol, AUC: 0.702', X: 186.25, Y: 306.78908198377735, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 518.5, 306.78908198377735)
Updated viewBox: -0.25 0.0 523.75 311.78908198377735
Updated SVG: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_7.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_7.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGCAUUGAGGCAGCCAGCGCAGGGGCUUCUGCUGAGGGGGCAGGCGGAGCUUGAGGAAACCGCAGAUAAGUUUUUUUCUCUUUGAAAGAUAGAGAUUAAUACAACUAC', '-structureDBN', '..((.((..(((((..(((......))).)))))..))..))..((((............))))......((.((..(((((.........)))))..)).))......', '-o', '/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_11.svg', '-title', 'MALAT1, -24.0 ± 1.5\n kcal/mol, AUC: 0.664', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,6,7,8,10,11,14,18,20,23,24,25,26,28,29,31,32,34,35,37,38,39,40,41,44,45,47,48,50,52,53,54,56,57,63,66,68,71,72,73,74,75,76,77,78,80,82,83,84,85,89,91,93,95,97,98,101,107', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,33,4,42,79,16,27,92,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '64,65,5,69,70,9,12,13,15,17,21,22,88,94,99,100,43,55,58,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,81,19,86,87,90,96,36,102,103,104,105,106,108,109,46,49,51,59,60,61']Output file: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_11.svg


Warning: Font Verdana not found. Using default font.
Text: 'A', X: 56.847994370706665, Y: 329.3098898000461, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 74.34799437070666, Y: 329.3098898000461, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 91.84799437070666, Y: 329.3098898000461, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 91.84799437070666, Y: 309.3098898000461, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 83.0508639084737, Y: 294.18183907814193, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 86.10753448006272, Y: 276.95093114992073, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 79.22805928034484, Y: 258.1713459314856, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 64.63535222604318, Y: 248.51199049241268, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 58.61581226371778, Y: 232.07984561376153, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 63.51572879318928, Y: 215.2798139270288, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 56.63626104870523, Y: 196.50022597753954, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 49.75679330422117, Y: 177.72063802805022, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 42.87732555973711, Y: 158.9410500785609, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 35.99785781525305, Y: 140.16146212907162, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 22.533848979537716, Y: 128.98244806503962, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 19.477089848295925, Y: 111.7514842792958, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 28.274233419014628, Y: 96.62335966425485, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 28.274233419014628, Y: 76.62335966425485, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 28.274233419014628, Y: 56.62335966425485, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 19.427333327511754, Y: 41.52430305167013, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 22.392538442407734, Y: 24.27736968815111, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 35.77424553589339, Y: 13.0, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 53.27422130213581, Y: 13.0, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 66.65592839562149, Y: 24.277369688150998, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 69.62113351051747, Y: 41.52430305167013, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 60.77423341901462, Y: 56.62335966425485, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 60.77423341901462, Y: 76.62335966425485, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 60.77423341901462, Y: 96.62335966425485, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 69.57136476322029, Y: 111.75141535783982, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 66.51468823317313, Y: 128.98232704428503, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 73.39415597765719, Y: 147.7619149937743, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 80.27362372214125, Y: 166.54150294326362, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 87.15309146662531, Y: 185.32109089275295, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 94.0325592111094, Y: 204.10067884224222, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 108.62525783210114, Y: 213.7600342532883, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 114.64479537018963, Y: 230.19217251425553, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 109.74488526030188, Y: 246.992198731944, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 116.62436046001977, Y: 265.77178395037913, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 130.088375425826, Y: 276.9507955793447, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 133.1451385293975, Y: 294.1817618705496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 124.34799437070666, Y: 309.3098898000461, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 124.34799437070666, Y: 329.3098898000461, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 141.84799437070666, Y: 329.3098898000461, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 159.34799437070666, Y: 329.3098898000461, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 176.84799437070666, Y: 329.3098898000461, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 176.84799437070666, Y: 309.3098898000461, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 176.84799437070666, Y: 289.3098898000461, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 176.84799437070666, Y: 269.3098898000461, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 162.5073711462792, Y: 259.2801504042749, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 153.53104867765006, Y: 244.25767451808164, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 151.49309405882693, Y: 226.87676867909587, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 156.75087828620403, Y: 210.18530823279522, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 168.38240850929827, Y: 197.11026897926646, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 184.34800655911408, Y: 189.94445948390646, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 201.84798218229923, Y: 189.94445948390646, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 217.81358023211504, Y: 197.11026897926646, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 229.4451104552093, Y: 210.18530823279522, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 234.7028946825864, Y: 226.87676867909582, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 232.66494006376325, Y: 244.25767451808164, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 223.68861759513413, Y: 259.2801504042749, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 209.34799437070666, Y: 269.3098898000461, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 209.34799437070666, Y: 289.3098898000461, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 209.34799437070666, Y: 309.3098898000461, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 209.34799437070666, Y: 329.3098898000461, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 226.84799437070666, Y: 329.3098898000461, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 244.34799437070666, Y: 329.3098898000461, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 261.84799437070666, Y: 329.3098898000461, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 279.34799437070666, Y: 329.3098898000461, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 296.84799437070666, Y: 329.30988980004616, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 314.34799437070666, Y: 329.30988980004616, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 331.84799437070666, Y: 329.30988980004616, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 331.84799437070666, Y: 309.3098898000461, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 325.1696172192174, Y: 293.1343533699634, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 331.84799437070666, Y: 276.95881693988065, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 331.84799437070666, Y: 256.95881693988065, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 321.4683110533049, Y: 242.86937771874955, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 321.4683110533049, Y: 225.3693741948786, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 331.84799437070666, Y: 211.27993497374754, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 331.84799437070666, Y: 191.27993497374754, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 331.84799437070666, Y: 171.27993497374754, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 331.84799437070666, Y: 151.27993497374754, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 331.84799437070666, Y: 131.27993497374754, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 319.2702448709171, Y: 119.11236768966106, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 314.5233859082227, Y: 102.26847247268364, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 318.8968741199568, Y: 85.32379552226496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 331.20267686237753, Y: 72.88125980976406, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 348.09799437070666, Y: 68.32080781626871, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 364.9933118790358, Y: 72.88125980976406, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 377.2991146214565, Y: 85.32379552226496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 381.67260283319064, Y: 102.26847247268364, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 376.9257438704962, Y: 119.112367689661, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 364.34799437070666, Y: 131.27993497374754, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 364.34799437070666, Y: 151.27993497374754, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 364.34799437070666, Y: 171.27993497374754, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 364.34799437070666, Y: 191.27993497374754, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 364.34799437070666, Y: 211.27993497374754, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 374.72767768810843, Y: 225.3693741948786, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 374.72767768810843, Y: 242.86937771874952, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 364.34799437070666, Y: 256.95881693988065, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 364.34799437070666, Y: 276.95881693988065, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 371.0263715221959, Y: 293.1343533699634, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 364.34799437070666, Y: 309.30988980004616, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 364.34799437070666, Y: 329.30988980004616, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 381.84799437070666, Y: 329.30988980004616, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 399.34799437070666, Y: 329.30988980004616, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 416.84799437070666, Y: 329.30988980004616, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 434.34799437070666, Y: 329.30988980004616, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 451.84799437070666, Y: 329.30988980004616, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 469.34799437070666, Y: 329.30988980004616, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 57.597994370706665, Y: 349.3098898000461, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: 40.13481070212652, Y: 219.10434721907697, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: -4.0, Y: 45.10236860696608, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: 82.0751084944961, Y: 123.77582444358586, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 149.0876822020489, Y: 297.67514471540323, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 130.84508220906034, Y: 250.69422436255934, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 234.57869166414858, Y: 272.9061634401475, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 310.59799437070666, Y: 349.30988980004616, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 308.09799437070666, Y: 171.27993497374754, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 397.9213818740337, Y: 102.48946314111953, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '100', X: 376.09799437070666, Y: 276.95881693988065, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '109', X: 461.09799437070666, Y: 349.30988980004616, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'MALAT1, -24.0 ± 1.5
 kcal/mol, AUC: 0.664', X: 178.3876638491092, Y: 362.1098898000462, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 488.09799437070666, 362.1098898000462)
Updated viewBox: -9.0 0.0 502.09799437070666 367.1098898000462
Updated SVG: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_11.svg/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_6.svg


Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_11.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGCAUUGAGGCAGCCAGCGCAGGGGCUUCUGCUGAGGGGGCAGGCGGAGCUUGAGGAAACCGCAGAUAAGUUUUUUUCUCUUUGAAAGAUAGAGAUUAAUACAACUAC', '-structureDBN', '.(((.........))).(((((((..((((((((.....)))))).))..)))).......)))......((.((..(((((.........)))))..)).))......', '-o', '/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_6.svg', '-title', 'MALAT1, -23.8 ± 1.6\n kcal/mol, AUC: 0.704', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,6,7,8,10,11,14,18,20,23,24,25,26,28,29,31,32,34,35,37,38,39,40,41,44,45,47,48,50,52,53,54,56,57,63,66,68,71,72,73,74,75,76,77,78,80,82,83,84,85,89,91,93,95,97,98,101,107', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,33,4,42,79,16,27,92,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '64,65,5,69,70,9,12,13,15,17,21,22,88,94,99,100,43,55,58,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,81,19,86,87,90,96,36,102,103,104,105,106,108,109,46,49,51,59,60,61']
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 211.99867087145049, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 229.49867087145049, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 229.49867087145049, Y: 253.98908198377737, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 229.49867087145049, Y: 233.98908198377737, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 216.92092137166094, Y: 221.82151469969088, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 212.1740624089665, Y: 204.97761948271346, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 216.5475506207007, Y: 188.03294253229475, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 228.8533533631214, Y: 175.59040681979394, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 245.74867087145049, Y: 171.02995482629862, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 262.64398837977956, Y: 175.59040681979397, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 274.94979112220034, Y: 188.03294253229475, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 279.32327933393447, Y: 204.9776194827135, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 274.57642037124003, Y: 221.82151469969088, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 261.9986708714505, Y: 233.98908198377737, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 261.9986708714505, Y: 253.98908198377737, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 261.9986708714505, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 279.4986708714505, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 296.9986708714505, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 296.9986708714505, Y: 253.98908198377737, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 296.9986708714505, Y: 233.98908198377737, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 281.06694240597176, Y: 218.05735351829867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 261.06694240597176, Y: 218.05735351829867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 241.06694240597176, Y: 218.05735351829867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 221.06694240597182, Y: 218.05735351829867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 206.9775031848407, Y: 228.43703683570044, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 189.47749966096978, Y: 228.43703683570044, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 175.38806043983868, Y: 218.05735351829867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 155.38806043983868, Y: 218.05735351829867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 138.30895883668285, Y: 221.87295675897664, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 120.2104918694834, Y: 230.38444860454578, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 102.11202490228396, Y: 238.89594045011498, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 84.01355793508452, Y: 247.40743229568415, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 65.91509096788508, Y: 255.9189241412533, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 47.816624000685636, Y: 264.4304159868225, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 35.99698043830449, Y: 277.33571853639205, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 18.514742352057738, Y: 278.1244893100975, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 5.580955181767877, Y: 266.33602218025777, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 4.75, Y: 248.85573839184175, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 16.507222051317683, Y: 235.89354191617937, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 33.98544975163571, Y: 235.0204071651234, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 52.083916718835155, Y: 226.50891531955423, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 70.1823836860346, Y: 217.99742347398504, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 88.28085065323404, Y: 209.48593162841587, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 106.37931762043348, Y: 200.9744397828467, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 124.47778458763293, Y: 192.46294793727753, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 138.309098720179, Y: 181.7417190260551, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 155.38806043983868, Y: 185.55735351829867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 175.38806043983868, Y: 185.55735351829867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 189.47749966096978, Y: 175.1776702008969, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 206.9775031848407, Y: 175.1776702008969, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 221.06694240597176, Y: 185.55735351829867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 241.06694240597176, Y: 185.55735351829867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 261.06694240597176, Y: 185.55735351829867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 281.06694240597176, Y: 185.55735351829867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 291.9783895409168, Y: 172.69891351980763, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 307.5440864267433, Y: 166.20982743376567, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 324.3580301184336, Y: 167.51000253972782, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 338.7410829486334, Y: 176.31494144111574, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 347.54602185002136, Y: 190.6979942713156, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 348.8461969559835, Y: 207.5119379630058, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 342.3571108699415, Y: 223.07763484883233, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 329.4986708714505, Y: 233.98908198377737, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 329.4986708714505, Y: 253.98908198377737, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 329.4986708714505, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 346.9986708714505, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 364.4986708714505, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 381.9986708714505, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 399.4986708714505, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 416.9986708714505, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 434.4986708714505, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 451.9986708714505, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 451.9986708714505, Y: 253.98908198377737, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 445.3202937199612, Y: 237.8135455536946, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 451.9986708714505, Y: 221.63800912361185, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 451.9986708714505, Y: 201.63800912361185, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 441.6189875540487, Y: 187.54856990248078, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 441.6189875540487, Y: 170.04856637860982, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 451.9986708714505, Y: 155.95912715747875, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 451.9986708714505, Y: 135.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 451.9986708714505, Y: 115.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 451.9986708714505, Y: 95.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 451.9986708714505, Y: 75.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 439.42092137166094, Y: 63.79155987339229, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 434.6740624089665, Y: 46.94766465641487, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 439.0475506207007, Y: 30.002987705996134, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 451.35335336312136, Y: 17.56045199349535, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 468.2486708714505, Y: 13.0, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 485.1439883797796, Y: 17.56045199349535, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 497.4497911222004, Y: 30.002987705996134, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 501.82327933393447, Y: 46.94766465641487, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 497.07642037124003, Y: 63.79155987339229, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 484.4986708714505, Y: 75.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 484.4986708714505, Y: 95.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 484.4986708714505, Y: 115.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 484.4986708714505, Y: 135.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 484.4986708714505, Y: 155.95912715747875, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 494.8783541888522, Y: 170.04856637860982, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 494.8783541888522, Y: 187.54856990248075, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 484.4986708714505, Y: 201.63800912361185, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 484.4986708714505, Y: 221.63800912361185, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 491.17704802293974, Y: 237.8135455536946, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 484.4986708714505, Y: 253.98908198377737, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 484.4986708714505, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 501.9986708714505, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 519.4986708714505, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 536.9986708714505, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 554.4986708714505, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 571.9986708714505, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 589.4986708714505, Y: 273.9890819837774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 212.74867087145049, Y: 293.9890819837774, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: 268.95771621301736, Y: 158.30684867632957, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: 273.2486708714505, Y: 233.98908198377737, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: 124.9719837150526, Y: 248.48291557174522, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 21.702127216795716, Y: 216.9322229965455, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 209.47072910553723, Y: 156.17708783868645, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_3.svg


Text: '60', X: 364.8442317920969, Y: 210.67660541973044, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 430.7486708714505, Y: 293.9890819837774, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 428.2486708714505, Y: 115.95912715747872, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 518.0720583747775, Y: 47.16865532485076, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '100', X: 496.2486708714505, Y: 221.63800912361185, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '109', X: 581.2486708714505, Y: 293.9890819837774, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'MALAT1, -23.8 ± 1.6
 kcal/mol, AUC: 0.704', X: 231.12433543572524, Y: 306.7890819837774, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 608.2486708714505, 306.7890819837774)
Updated viewBox: -0.25 0.0 613.4986708714505 311.7890819837774
Updated SVG: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_6.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_6.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGCAUUGAGGCAGCCAGCGCAGGGGCUUCUGCUGAGGGGGCAGGCGGAGCUUGAGGAAACCGCAGAUAAGUUUUUUUCUCUUUGAAAGAUAGAGAUUAAUACAACUAC', '-structureDBN', '.(((.........))).....((((((((((((........(((((...)))))........)))))..))))))).(((((.........))))).............', '-o', '/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_3.svg', '-title', 'MALAT1, -23.6 ± 1.3\n kcal/mol, AUC: 0.74', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,6,7,8,10,11,14,18,20,23,24,25,26,28,29,31,32,34,35,37,38,39,40,41,44,45,47,48,50,52,53,54,56,57,63,66,68,71,72,73,74,75,76,77,78,80,82,83,84,85,89,91,93,95,97,98,101,107', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,33,4,42,79,16,27,92,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '64,65,5,69,70,9,12,13,15,17,21,22,88,94,99,100,43,55,58,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,81,19,86,87,90,96,36,102,103,104,105,106,108,109,46,49,51,59,60,61']
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 64.08560329901718, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 81.58560329901718, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 81.58560329901718, Y: 360.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 81.58560329901718, Y: 340.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 69.00785379922763, Y: 328.3987726784428, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 64.2609948365332, Y: 311.5548774614654, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 68.63448304826733, Y: 294.61020051104674, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 80.94028579068808, Y: 282.16766479854596, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 97.83560329901718, Y: 277.6072128050506, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 114.73092080734628, Y: 282.16766479854596, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 127.03672354976703, Y: 294.61020051104674, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 131.41021176150116, Y: 311.5548774614655, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 126.66335279880673, Y: 328.3987726784428, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 114.08560329901718, Y: 340.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 114.08560329901718, Y: 360.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 114.08560329901718, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 131.58560329901718, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 149.08560329901718, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 166.58560329901718, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 184.08560329901718, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 201.58560329901718, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 219.08560329901718, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 219.08560329901718, Y: 360.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 219.08560329901718, Y: 340.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 219.08560329901718, Y: 320.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 219.08560329901718, Y: 300.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 219.08560329901718, Y: 280.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 219.08560329901718, Y: 260.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 212.40728660569422, Y: 244.44345722768642, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 198.26515098196325, Y: 230.30132160395547, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 184.1230153582323, Y: 216.15918598022452, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 169.98087973450134, Y: 202.01705035649357, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 155.8387441107704, Y: 187.87491473276262, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 139.52484755746497, Y: 194.20795723919653, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 122.08273091457414, Y: 195.63035491778012, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 104.95829635634766, Y: 192.0241950209829, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 89.57111111005958, Y: 183.68841801240936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 77.19672934489148, Y: 171.3140362472412, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 68.86095233631795, Y: 155.9268510009531, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 65.25479243952066, Y: 138.8024164427266, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 66.67719011810425, Y: 121.3602997998359, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 73.01023262453816, Y: 105.04640324653036, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 58.86809700080721, Y: 90.90426762279941, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 44.72596137707626, Y: 76.76213199906846, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 30.583825753345366, Y: 62.61999637533751, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 16.441690129614415, Y: 48.477860751606556, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 4.75, Y: 35.456525420486, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 9.581463284422398, Y: 18.636663517851787, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 26.40132518705667, Y: 13.805200233429389, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 39.422660518177224, Y: 25.496890363043747, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 53.56479614190812, Y: 39.6390259867747, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 67.70693176563907, Y: 53.78116161050565, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 81.84906738937005, Y: 67.9232972342366, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 95.99120301310097, Y: 82.06543285796766, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 112.3050995664064, Y: 75.73239035153375, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 129.74721620929722, Y: 74.30999267295016, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 146.8716507675237, Y: 77.91615256974734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 162.2588360138118, Y: 86.25192957832093, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 174.63321777897985, Y: 98.62631134348902, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 182.9689947875534, Y: 114.01349658977716, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 186.57515468435068, Y: 131.13793114800347, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 185.15275700576709, Y: 148.5800477908943, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 178.8197144993332, Y: 164.8939443441998, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 192.96185012306412, Y: 179.03607996793076, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 207.10398574679508, Y: 193.1782155916617, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 221.24612137052603, Y: 207.32035121539266, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 235.388256994257, Y: 221.4624868391236, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 251.5608201190763, Y: 228.1904079217522, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 258.2639737329298, Y: 244.37325228698748, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 251.58560329901718, Y: 260.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 251.58560329901718, Y: 280.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 251.58560329901718, Y: 300.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 251.58560329901718, Y: 320.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 251.58560329901718, Y: 340.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 251.58560329901718, Y: 360.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 251.58560329901718, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 269.0856032990172, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 286.5856032990172, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 286.5856032990172, Y: 360.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 286.5856032990172, Y: 340.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 286.5856032990172, Y: 320.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 286.5856032990172, Y: 300.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 274.00785379922763, Y: 288.3987726784429, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 269.2609948365332, Y: 271.5548774614655, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 273.6344830482674, Y: 254.6102005110467, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 285.9402857906881, Y: 242.16766479854593, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 302.8356032990172, Y: 237.60721280505058, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 319.73092080734625, Y: 242.16766479854593, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 332.03672354976703, Y: 254.6102005110467, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 336.41021176150116, Y: 271.5548774614655, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 331.6633527988067, Y: 288.3987726784428, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 319.0856032990172, Y: 300.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 319.0856032990172, Y: 320.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 319.0856032990172, Y: 340.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 319.0856032990172, Y: 360.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 319.0856032990172, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 336.5856032990172, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 354.0856032990172, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 371.5856032990172, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 389.0856032990172, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 406.5856032990172, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 424.0856032990172, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 441.5856032990172, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 459.0856032990172, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 476.5856032990172, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 494.0856032990172, Y: 380.56633996252936, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_1.svg


Warning: Font Verdana not found. Using default font.
Text: 'U', X: 511.5856032990172, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 529.0856032990172, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 546.5856032990172, Y: 380.56633996252936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 64.83560329901718, Y: 400.56633996252936, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: 121.04464864058409, Y: 264.8841066550815, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: 180.33560329901718, Y: 400.56633996252936, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: 180.3730153582323, Y: 244.44345722768642, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 41.5445849155611, Y: 140.06341430175274, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 45.36073708804534, Y: 8.0, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 197.99259688810685, Y: 107.11771061788858, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 267.8356018341126, Y: 260.5586851483099, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 262.8356032990172, Y: 340.56633996252936, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 352.65899080234425, Y: 271.77586812990137, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '100', X: 380.8356032990172, Y: 400.56633996252936, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '109', X: 538.3356032990172, Y: 400.56633996252936, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'MALAT1, -23.6 ± 1.3
 kcal/mol, AUC: 0.74', X: 212.6678016495086, Y: 413.36633996252937, Width: 136.5, Height: 23
Calculated bounding box: (4.75, 0.0, 565.3356032990172, 413.36633996252937)
Updated viewBox: -0.25 -5.0 570.5856032990172 423.36633996252937
Updated SVG: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_3.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_3.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGCAUUGAGGCAGCCAGCGCAGGGGCUUCUGCUGAGGGGGCAGGCGGAGCUUGAGGAAACCGCAGAUAAGUUUUUUUCUCUUUGAAAGAUAGAGAUUAAUACAACUAC', '-structureDBN', '.((((..(((((..((......)).)))))))))..((((((..((((............))))......)))))).(((((.........))))).............', '-o', '/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_1.svg', '-title', 'MALAT1, -23.0 ± 1.6\n kcal/mol, AUC: 0.767', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,6,7,8,10,11,14,18,20,23,24,25,26,28,29,31,32,34,35,37,38,39,40,41,44,45,47,48,50,52,53,54,56,57,63,66,68,71,72,73,74,75,76,77,78,80,82,83,84,85,89,91,93,95,97,98,101,107', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,33,4,42,79,16,27,92,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '64,65,5,69,70,9,12,13,15,17,21,22,88,94,99,100,43,55,58,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,81,19,86,87,90,96,36,102,103,104,105,106,108,109,46,49,51,59,60,61']
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 21.84525209958369, Y: 284.044243320619, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 39.34525209958369, Y: 284.044243320619, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 39.34525209958369, Y: 264.044243320619, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 39.34525209958369, Y: 244.04424332061902, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 39.34525209958369, Y: 224.04424332061902, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 32.6668816656711, Y: 207.85115564507717, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 39.37003527952456, Y: 191.6683112798419, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 55.542598404343835, Y: 184.9403901972133, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 69.68473402807479, Y: 170.79825457348235, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 83.82686965180571, Y: 156.65611894975135, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 97.96900527553663, Y: 142.5139833260204, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 112.11114089926758, Y: 128.37184770228944, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 116.58779251572832, Y: 111.45416841956373, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 130.93331241307772, Y: 101.43147712016318, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 148.35852305191355, Y: 103.04712442094652, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 166.50216679595223, Y: 94.63236407442409, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 176.47753479446152, Y: 80.25386675678376, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 193.37122004671133, Y: 75.68740747009466, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 209.23204185724504, Y: 83.0822356164123, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 216.59494696438907, Y: 98.95790190801293, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 211.9945109757595, Y: 115.84236638082328, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 197.59597476552287, Y: 125.78878819077968, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 180.17615235905117, Y: 124.11578515848694, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 162.0325086150125, Y: 132.53054550500937, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 152.00983342312088, Y: 146.87613653493352, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 135.0921112878304, Y: 151.3528180908522, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 120.94997566409944, Y: 165.49495371458318, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 106.80784004036852, Y: 179.63708933831415, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 92.6657044166376, Y: 193.7792249620451, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 78.52356879290664, Y: 207.92136058577609, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 71.84525209958369, Y: 224.04424332061902, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 71.84525209958369, Y: 244.04424332061902, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 71.84525209958369, Y: 264.044243320619, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 71.84525209958369, Y: 284.044243320619, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 89.34525209958369, Y: 284.044243320619, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 106.84525209958369, Y: 284.044243320619, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 124.34525209958369, Y: 284.044243320619, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 124.34525209958369, Y: 264.044243320619, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 124.34525209958369, Y: 244.04424332061902, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 124.34525209958369, Y: 224.04424332061902, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 124.34525209958369, Y: 204.04424332061902, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 124.34525209958369, Y: 184.04424332061902, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 109.52731006914283, Y: 172.03607918642317, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 102.22850851791952, Y: 154.4152134923901, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 104.21532152198245, Y: 135.44629191054528, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 90.0731858982515, Y: 121.30415628681433, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 75.93105027452054, Y: 107.16202066308338, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 61.78891465078959, Y: 93.01988503935243, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 44.556465982071956, Y: 96.06814022750265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 27.586752925048472, Y: 91.79286414584882, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 13.855545012416485, Y: 80.94375929465744, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 5.770715024124257, Y: 65.42329954397715, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 4.75, Y: 47.953116727200495, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 10.972390159863465, Y: 31.596741593616912, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 23.34674159361697, Y: 19.222390159863494, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 39.70311672720044, Y: 13.0, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 57.17329954397712, Y: 14.020715024124229, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 72.69375929465735, Y: 22.105545012416428, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 83.5428641458488, Y: 35.83675292504847, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 87.81814022750262, Y: 52.80646598207193, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 84.7698850393524, Y: 70.03891465078962, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 98.91202066308335, Y: 84.18105027452057, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 113.0541562868143, Y: 98.32318589825152, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 127.19629191054526, Y: 112.46532152198247, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 143.86869681297304, Y: 110.21474546704124, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 159.9246830019197, Y: 115.23863691789157, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 172.3407656725927, Y: 126.59095249334078, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 178.77888618143942, Y: 142.13395034199087, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 178.02668925480359, Y: 158.94074591976633, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 170.22582025480324, Y: 173.84647034544946, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 156.8452520995837, Y: 184.04424332061902, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 156.8452520995837, Y: 204.04424332061902, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 156.8452520995837, Y: 224.04424332061902, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 156.8452520995837, Y: 244.04424332061902, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 156.8452520995837, Y: 264.044243320619, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 156.8452520995837, Y: 284.044243320619, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 174.3452520995837, Y: 284.044243320619, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 191.8452520995837, Y: 284.044243320619, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 191.8452520995837, Y: 264.044243320619, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 191.8452520995837, Y: 244.04424332061902, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 191.8452520995837, Y: 224.04424332061902, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 191.8452520995837, Y: 204.04424332061902, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 179.26750259979414, Y: 191.87667603653256, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 174.5206436370997, Y: 175.03278081955514, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 178.89413184883387, Y: 158.0881038691364, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 191.1999345912546, Y: 145.64556815663562, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 208.0952520995837, Y: 141.08511616314027, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 224.9905696079128, Y: 145.64556815663562, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 237.2963723503335, Y: 158.0881038691364, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 241.6698605620677, Y: 175.03278081955514, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 236.92300159937326, Y: 191.87667603653253, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 224.3452520995837, Y: 204.04424332061902, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 224.3452520995837, Y: 224.04424332061902, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 224.3452520995837, Y: 244.04424332061902, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 224.3452520995837, Y: 264.044243320619, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 224.3452520995837, Y: 284.044243320619, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 241.84525209958372, Y: 284.044243320619, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_10.svg


Warning: Font Verdana not found. Using default font.
Text: 'U', X: 259.3452520995837, Y: 284.04424332061905, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 276.8452520995837, Y: 284.04424332061905, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 294.3452520995837, Y: 284.04424332061905, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 311.8452520995837, Y: 284.04424332061905, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 329.3452520995837, Y: 284.04424332061905, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 346.8452520995837, Y: 284.04424332061905, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 364.3452520995837, Y: 284.04424332061905, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 381.8452520995837, Y: 284.04424332061905, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 399.3452520995837, Y: 284.04424332061905, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 416.8452520995837, Y: 284.04424332061905, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 434.3452520995837, Y: 284.04424332061905, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 451.8452520995837, Y: 284.04424332061905, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 22.59525209958369, Y: 304.044243320619, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: 65.93473402807476, Y: 142.5139833260204, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: 232.77421836342245, Y: 97.27738368327707, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: 94.77351605636458, Y: 207.96728943184482, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 100.59525209958369, Y: 224.04424332061902, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 14.998330669262984, Y: 109.73394248658508, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 104.05528209697789, Y: 52.089416549000305, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 181.76154151694655, Y: 186.74401761212232, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 168.0952520995837, Y: 244.04424332061902, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 257.9186396029108, Y: 175.2537714879911, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '100', X: 286.0952520995837, Y: 304.04424332061905, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '109', X: 443.5952520995837, Y: 304.04424332061905, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'MALAT1, -23.0 ± 1.6
 kcal/mol, AUC: 0.767', X: 162.29762604979186, Y: 316.84424332061906, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 470.5952520995837, 316.84424332061906)
Updated viewBox: -0.25 0.0 475.8452520995837 321.84424332061906
Updated SVG: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_1.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGCAUUGAGGCAGCCAGCGCAGGGGCUUCUGCUGAGGGGGCAGGCGGAGCUUGAGGAAACCGCAGAUAAGUUUUUUUCUCUUUGAAAGAUAGAGAUUAAUACAACUAC', '-structureDBN', '..((......)).(((....(((.(.....).)))....)))..((((............))))......((.((..(((((.........)))))..)).))......', '-o', '/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_10.svg', '-title', 'MALAT1, -22.8 ± 1.1\n kcal/mol, AUC: 0.665', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,6,7,8,10,11,14,18,20,23,24,25,26,28,29,31,32,34,35,37,38,39,40,41,44,45,47,48,50,52,53,54,56,57,63,66,68,71,72,73,74,75,76,77,78,80,82,83,84,85,89,91,93,95,97,98,101,107', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,33,4,42,79,16,27,92,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '64,65,5,69,70,9,12,13,15,17,21,22,88,94,99,100,43,55,58,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,81,19,86,87,90,96,36,102,103,104,105,106,108,109,46,49,51,59,60,61']
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 4.75, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 22.25, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 39.75, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 39.75, Y: 253.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 30.903099908497154, Y: 238.89002537119254, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 33.868305023393106, Y: 221.64309200767346, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 47.25001211687879, Y: 210.36572231952243, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 64.74998788312121, Y: 210.36572231952243, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 78.1316949766069, Y: 221.64309200767346, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 81.09690009150285, Y: 238.89002537119256, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 72.25, Y: 253.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 72.25, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 89.75, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 107.25, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 107.25, Y: 253.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 107.25, Y: 233.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 93.42691882602546, Y: 223.25723754535764, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 85.73137587321534, Y: 207.54009159406664, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 85.73137587321534, Y: 190.04008993141733, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 93.42691882602546, Y: 174.32294398012633, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 107.25, Y: 163.59109954170665, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 107.25, Y: 143.59109954170665, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 107.25, Y: 123.59109954170665, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 100.57162284851074, Y: 107.41556311162392, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 107.25, Y: 91.24002668154114, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 100.6018303951821, Y: 75.05198638188656, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 107.32804965122153, Y: 58.896220155633074, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 123.5, Y: 52.20900625488872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 139.6719503487785, Y: 58.896220155633074, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 146.39816960481792, Y: 75.05198638188656, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 139.75, Y: 91.24002668154114, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 146.42837715148926, Y: 107.41556311162392, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 139.75, Y: 123.59109954170665, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 139.75, Y: 143.59109954170665, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 139.75, Y: 163.59109954170665, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 153.57308117397454, Y: 174.32294398012633, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 161.26862412678466, Y: 190.04008993141733, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 161.26862412678466, Y: 207.5400915940666, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 153.57308117397457, Y: 223.25723754535764, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 139.75, Y: 233.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 139.75, Y: 253.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 139.75, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 157.25, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 174.75, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 192.25, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 192.25, Y: 253.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 192.25, Y: 233.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 192.25, Y: 213.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 177.90937677557255, Y: 203.95934258800608, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 168.9330543069434, Y: 188.93686670181282, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 166.89509968812027, Y: 171.55596086282705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 172.15288391549737, Y: 154.8645004165264, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 183.78441413859161, Y: 141.78946116299764, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 199.75001218840742, Y: 134.62365166763763, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 217.24998781159258, Y: 134.62365166763763, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 233.21558586140839, Y: 141.78946116299764, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 244.84711608450266, Y: 154.8645004165264, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 250.10490031187976, Y: 171.55596086282702, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 248.0669456930566, Y: 188.93686670181282, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 239.09062322442747, Y: 203.95934258800608, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 224.75, Y: 213.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 224.75, Y: 233.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 224.75, Y: 253.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 224.75, Y: 273.9890819837773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 242.25, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 259.75, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 277.25, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 294.75, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 312.25, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 329.75, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 347.25, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 347.25, Y: 253.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 340.57162284851074, Y: 237.81354555369458, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 347.25, Y: 221.63800912361182, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 347.25, Y: 201.6380091236118, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 336.87031668259823, Y: 187.54856990248075, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 336.87031668259823, Y: 170.0485663786098, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 347.25, Y: 155.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 347.25, Y: 135.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 347.25, Y: 115.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 347.25, Y: 95.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 347.25, Y: 75.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 334.67225050021045, Y: 63.79155987339223, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 329.925391537516, Y: 46.947664656414815, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 334.29887974925015, Y: 30.002987705996134, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 346.60468249167087, Y: 17.56045199349535, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 363.5, Y: 13.0, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 380.39531750832913, Y: 17.56045199349535, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 392.70112025074985, Y: 30.002987705996134, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 397.074608462484, Y: 46.947664656414815, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 392.32774949978955, Y: 63.79155987339223, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 379.75, Y: 75.95912715747872, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_8.svg


Warning: Font Verdana not found. Using default font.
Text: 'G', X: 379.75, Y: 95.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 379.75, Y: 115.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 379.75, Y: 135.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 379.75, Y: 155.95912715747872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 390.12968331740177, Y: 170.04856637860976, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 390.12968331740177, Y: 187.54856990248072, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 379.75, Y: 201.6380091236118, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 379.75, Y: 221.6380091236118, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 386.42837715148926, Y: 237.81354555369455, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 379.75, Y: 253.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 379.75, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 397.25, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 414.75, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 432.25, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 449.75, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 467.25, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 484.75, Y: 273.98908198377734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 5.5, Y: 293.9890819837773, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: 97.02423341901459, Y: 242.46809092648851, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: 74.16291538501456, Y: 161.70091176529255, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: 162.64811137334496, Y: 75.00372402049032, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 154.84515944241676, Y: 240.68684023485588, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 146.24708783835368, Y: 195.37341654629049, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 249.98069729344195, Y: 217.5853556238787, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 326.0, Y: 293.98908198377734, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 323.5, Y: 115.95912715747872, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 413.32338750332707, Y: 47.168655324850704, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '100', X: 391.5, Y: 221.6380091236118, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '109', X: 476.5, Y: 293.98908198377734, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'MALAT1, -22.8 ± 1.1
 kcal/mol, AUC: 0.665', X: 178.75, Y: 306.78908198377735, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 503.5, 306.78908198377735)
Updated viewBox: -0.25 0.0 508.75 311.78908198377735
Updated SVG: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_10.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_10.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGCAUUGAGGCAGCCAGCGCAGGGGCUUCUGCUGAGGGGGCAGGCGGAGCUUGAGGAAACCGCAGAUAAGUUUUUUUCUCUUUGAAAGAUAGAGAUUAAUACAACUAC', '-structureDBN', '.(((.........)))........((((((..(((......)))..)))))).(((((((..((......))..)))))))............................', '-o', '/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_8.svg', '-title', 'MALAT1, -22.8 ± 0.9\n kcal/mol, AUC: 0.677', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,6,7,8,10,11,14,18,20,23,24,25,26,28,29,31,32,34,35,37,38,39,40,41,44,45,47,48,50,52,53,54,56,57,63,66,68,71,72,73,74,75,76,77,78,80,82,83,84,85,89,91,93,95,97,98,101,107', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,33,4,42,79,16,27,92,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '64,65,5,69,70,9,12,13,15,17,21,22,88,94,99,100,43,55,58,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,81,19,86,87,90,96,36,102,103,104,105,106,108,109,46,49,51,59,60,61']
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 4.75, Y: 242.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 22.25, Y: 242.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 22.25, Y: 222.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 22.25, Y: 202.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 9.672250500210453, Y: 190.1346743463015, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 4.92539153751602, Y: 173.2907791293241, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 9.298879749250204, Y: 156.34610217890537, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 21.60468249167093, Y: 143.90356646640458, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 38.5, Y: 139.34311447290924, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 55.39531750832907, Y: 143.90356646640458, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 67.70112025074985, Y: 156.34610217890537, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 72.07460846248398, Y: 173.2907791293241, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 67.32774949978955, Y: 190.1346743463015, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 54.75, Y: 202.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 54.75, Y: 222.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 54.75, Y: 242.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 72.25, Y: 242.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 89.75, Y: 242.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 107.25, Y: 242.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 124.75, Y: 242.302241630388, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 142.25, Y: 242.302241630388, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 159.75, Y: 242.302241630388, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 177.25, Y: 242.302241630388, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 194.75, Y: 242.302241630388, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 212.25, Y: 242.302241630388, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 212.25, Y: 222.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 212.25, Y: 202.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 212.25, Y: 182.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 212.25, Y: 162.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 212.25, Y: 142.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 201.87031668259823, Y: 128.2128024092569, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 201.87031668259823, Y: 110.71279888538598, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 212.25, Y: 96.62335966425493, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 212.25, Y: 76.62335966425493, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 212.25, Y: 56.623359664254934, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 203.40309990849715, Y: 41.52430305167016, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 206.3683050233931, Y: 24.27736968815114, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 219.75001211687876, Y: 13.0, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 237.2499878831212, Y: 13.0, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 250.63169497660687, Y: 24.277369688151026, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 253.59690009150285, Y: 41.52430305167016, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 244.75, Y: 56.623359664254934, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 244.75, Y: 76.62335966425493, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 244.75, Y: 96.62335966425488, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 255.12968331740177, Y: 110.71279888538598, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 255.12968331740177, Y: 128.2128024092569, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 244.75, Y: 142.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 244.75, Y: 162.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 244.75, Y: 182.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 244.75, Y: 202.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 244.75, Y: 222.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 244.75, Y: 242.302241630388, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 262.25, Y: 242.302241630388, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 279.75, Y: 242.302241630388, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 279.75, Y: 222.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 279.75, Y: 202.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 279.75, Y: 182.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 279.75, Y: 162.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 279.75, Y: 142.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 279.75, Y: 122.30224163038801, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 269.37031668259823, Y: 108.21280240925691, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 269.37031668259823, Y: 90.71279888538598, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 279.75, Y: 76.62335966425493, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 279.75, Y: 56.623359664254934, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 270.90309990849715, Y: 41.52430305167016, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 273.8683050233931, Y: 24.27736968815114, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 287.2500121168788, Y: 13.0, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 304.7499878831212, Y: 13.0, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 318.13169497660687, Y: 24.277369688151026, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 321.09690009150285, Y: 41.52430305167016, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 312.25, Y: 56.623359664254934, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 312.25, Y: 76.62335966425488, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 322.62968331740177, Y: 90.71279888538598, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 322.62968331740177, Y: 108.21280240925691, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 312.25, Y: 122.30224163038801, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 312.25, Y: 142.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 312.25, Y: 162.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 312.25, Y: 182.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 312.25, Y: 202.30224163038798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 312.25, Y: 222.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 312.25, Y: 242.302241630388, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 329.75, Y: 242.302241630388, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 347.25, Y: 242.302241630388, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 364.75, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 382.25, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 399.75, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 417.25, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 434.75, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 452.25, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 469.75, Y: 242.30224163038804, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_9.svg


Warning: Font Verdana not found. Using default font.
Text: 'U', X: 487.25, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 504.75, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 522.25, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 539.75, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 557.25, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 574.75, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 592.25, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 609.75, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 627.25, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 644.75, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 662.25, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 679.75, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 697.25, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 714.75, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 732.25, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 749.75, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 767.25, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 784.75, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 802.25, Y: 242.30224163038804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 5.5, Y: 262.302241630388, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: 61.70904534156685, Y: 126.62000832294018, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: 121.0, Y: 262.30224163038804, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: 188.7514348971348, Y: 145.46359836095394, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 264.23414637776443, Y: 14.33290236352957, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 261.0, Y: 202.30224163038798, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 256.25143489713486, Y: 125.46359836095434, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 337.0242334190146, Y: 45.10236860696608, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 328.5, Y: 222.30224163038804, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 466.0, Y: 262.30224163038804, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '100', X: 636.5, Y: 262.30224163038804, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '109', X: 794.0, Y: 262.30224163038804, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'MALAT1, -22.8 ± 0.9
 kcal/mol, AUC: 0.677', X: 337.5, Y: 275.10224163038805, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 821.0, 275.10224163038805)
Updated viewBox: -0.25 0.0 826.25 280.10224163038805
Updated SVG: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_8.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_8.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGCAUUGAGGCAGCCAGCGCAGGGGCUUCUGCUGAGGGGGCAGGCGGAGCUUGAGGAAACCGCAGAUAAGUUUUUUUCUCUUUGAAAGAUAGAGAUUAAUACAACUAC', '-structureDBN', '.(((.(((....((((........)))).(((((.....))))).))).))).(((((((..((......))..)))))))............................', '-o', '/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_9.svg', '-title', 'MALAT1, -20.6 ± 1.0\n kcal/mol, AUC: 0.672', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,6,7,8,10,11,14,18,20,23,24,25,26,28,29,31,32,34,35,37,38,39,40,41,44,45,47,48,50,52,53,54,56,57,63,66,68,71,72,73,74,75,76,77,78,80,82,83,84,85,89,91,93,95,97,98,101,107', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,33,4,42,79,16,27,92,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '64,65,5,69,70,9,12,13,15,17,21,22,88,94,99,100,43,55,58,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,81,19,86,87,90,96,36,102,103,104,105,106,108,109,46,49,51,59,60,61']
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 25.55467908091535, Y: 331.10724079397244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 43.05467908091535, Y: 331.10724079397244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 43.05467908091535, Y: 311.10724079397244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 43.05467908091535, Y: 291.10724079397244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 36.37630192942609, Y: 274.9317043638897, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 43.05467908091535, Y: 258.756167933807, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 43.05467908091535, Y: 238.75616793380692, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 43.05467908091535, Y: 218.75616793380692, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 27.7664190628594, Y: 207.41082058068343, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 19.209130480993252, Y: 190.404333198823, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 19.209130480993252, Y: 171.3662712979173, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 27.7664190628594, Y: 154.35978391605687, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 43.05467908091529, Y: 143.01443656293333, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 43.05467908091529, Y: 123.01443656293333, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 43.05467908091529, Y: 103.01443656293333, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 43.05467908091529, Y: 83.01443656293333, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 31.399611006631602, Y: 69.9603223747531, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 28.716468390366998, Y: 52.667223902963315, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 35.86792447421064, Y: 36.695148742387346, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 50.55467180871497, Y: 27.17937437628018, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 68.05468635311561, Y: 27.17937437628018, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 82.74143368761992, Y: 36.695148742387346, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 89.89288977146359, Y: 52.667223902963315, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 87.20974715519898, Y: 69.9603223747531, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 75.55467908091529, Y: 83.01443656293333, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 75.55467908091529, Y: 103.01443656293333, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 75.55467908091529, Y: 123.01443656293333, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 75.55467908091529, Y: 143.01443656293333, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 88.44455697843225, Y: 151.74542435085317, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 97.17554476635209, Y: 164.63530224837012, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 117.17554476635209, Y: 164.63530224837012, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 137.1755447663521, Y: 164.63530224837012, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 157.1755447663521, Y: 164.63530224837012, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 177.1755447663521, Y: 164.63530224837012, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 193.3635850660067, Y: 157.98713264355223, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 209.51935129226013, Y: 164.71335189959171, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 216.20656519300456, Y: 180.88530224837012, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 209.51935129226013, Y: 197.05725259714865, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 193.3635850660067, Y: 203.78347185318808, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 177.1755447663521, Y: 197.13530224837012, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 157.1755447663521, Y: 197.13530224837012, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 137.1755447663521, Y: 197.13530224837012, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 117.17554476635209, Y: 197.13530224837012, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 97.17554476635209, Y: 197.13530224837012, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 88.44455697843227, Y: 210.02518014588708, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 75.55467908091535, Y: 218.75616793380692, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 75.55467908091535, Y: 238.75616793380692, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 75.55467908091535, Y: 258.7561679338069, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 82.2330562324046, Y: 274.9317043638897, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 75.55467908091535, Y: 291.10724079397244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 75.55467908091535, Y: 311.10724079397244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 75.55467908091535, Y: 331.10724079397244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 93.05467908091535, Y: 331.10724079397244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 110.55467908091535, Y: 331.10724079397244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 110.55467908091535, Y: 311.10724079397244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 110.55467908091535, Y: 291.10724079397244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 110.55467908091535, Y: 271.10724079397244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 110.55467908091535, Y: 251.10724079397247, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 110.55467908091535, Y: 231.10724079397247, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 110.55467908091535, Y: 211.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 100.17499576351358, Y: 197.0178015728414, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 100.17499576351358, Y: 179.51779804897046, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 110.55467908091535, Y: 165.42835882783942, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 110.55467908091535, Y: 145.42835882783942, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 101.7077789894125, Y: 130.3293022152546, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 104.67298410430843, Y: 113.08236885173557, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 118.05469119779411, Y: 101.80499916358451, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 135.55466696403656, Y: 101.80499916358445, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 148.93637405752222, Y: 113.08236885173551, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 151.9015791724182, Y: 130.3293022152546, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 143.05467908091535, Y: 145.42835882783942, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 143.05467908091535, Y: 165.42835882783936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 153.43436239831712, Y: 179.51779804897046, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 153.43436239831712, Y: 197.0178015728414, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 143.05467908091535, Y: 211.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 143.05467908091535, Y: 231.10724079397247, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 143.05467908091535, Y: 251.10724079397247, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 143.05467908091535, Y: 271.10724079397244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 143.05467908091535, Y: 291.10724079397244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 143.05467908091535, Y: 311.10724079397244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 143.05467908091535, Y: 331.10724079397244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 160.55467908091535, Y: 331.10724079397244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 178.05467908091535, Y: 331.10724079397244, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_2.svg


Warning: Font Verdana not found. Using default font.
Text: 'U', X: 195.55467908091535, Y: 331.10724079397244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 213.05467908091535, Y: 331.10724079397244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 230.55467908091535, Y: 331.10724079397244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 248.05467908091535, Y: 331.10724079397244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 265.5546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 283.0546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 300.5546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 318.0546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 335.5546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 353.0546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 370.5546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 388.0546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 405.5546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 423.0546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 440.5546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 458.0546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 475.5546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 493.0546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 510.5546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 528.0546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 545.5546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 563.0546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 580.5546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 598.0546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 615.5546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 633.0546790809153, Y: 331.1072407939725, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 26.30467908091535, Y: 351.10724079397244, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: -4.0, Y: 195.02409952664513, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: 41.13443384770421, Y: 8.0, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: 101.07921341365392, Y: 146.1577115981444, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 173.449675964615, Y: 217.1352876904966, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 91.80467908091535, Y: 291.10724079397244, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 87.0561139780501, Y: 214.26859752453817, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 167.82891249992994, Y: 133.9073677705505, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 159.30467908091535, Y: 311.10724079397244, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 296.8046790809153, Y: 351.1072407939725, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '100', X: 467.3046790809153, Y: 351.1072407939725, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '109', X: 624.8046790809153, Y: 351.1072407939725, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'MALAT1, -20.6 ± 1.0
 kcal/mol, AUC: 0.672', X: 260.1319047809543, Y: 363.9072407939725, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 0.0, 651.8046790809153, 363.9072407939725)
Updated viewBox: -9.0 -5.0 665.8046790809153 373.9072407939725
Updated SVG: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_9.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_9.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGCAUUGAGGCAGCCAGCGCAGGGGCUUCUGCUGAGGGGGCAGGCGGAGCUUGAGGAAACCGCAGAUAAGUUUUUUUCUCUUUGAAAGAUAGAGAUUAAUACAACUAC', '-structureDBN', '((((.(((..((.....)).)))..))))(((((.....)))))((((............)))).....(((((((.(((.......))).)))))))...........', '-o', '/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_2.svg', '-title', 'MALAT1, -22.4 ± 1.3\n kcal/mol, AUC: 0.748', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,6,7,8,10,11,14,18,20,23,24,25,26,28,29,31,32,34,35,37,38,39,40,41,44,45,47,48,50,52,53,54,56,57,63,66,68,71,72,73,74,75,76,77,78,80,82,83,84,85,89,91,93,95,97,98,101,107', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,33,4,42,79,16,27,92,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '64,65,5,69,70,9,12,13,15,17,21,22,88,94,99,100,43,55,58,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,81,19,86,87,90,96,36,102,103,104,105,106,108,109,46,49,51,59,60,61']
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 55.46273203210882, Y: 256.531523606047, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 55.46273203210882, Y: 236.53152360604705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 55.46273203210882, Y: 216.53152360604705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 55.46273203210882, Y: 196.53152360604705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 46.66560156987586, Y: 181.4034728841428, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 49.722272141464884, Y: 164.17256495592162, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 42.84279694174697, Y: 145.39297973748648, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 35.96332174202908, Y: 126.61339451905141, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 22.49930677622288, Y: 115.43438289008589, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 19.442543672651396, Y: 98.20341659888084, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 28.239687831342252, Y: 83.07528866938435, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 28.239687831342195, Y: 63.07528866938435, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 21.5915182265243, Y: 46.887248369729775, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 28.31773748256373, Y: 30.73148214347634, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 44.489687831342195, Y: 24.044268242731903, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 60.66163818012069, Y: 30.73148214347634, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 67.38785743616012, Y: 46.887248369729775, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 60.73968783134222, Y: 63.07528866938435, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 60.73968783134222, Y: 83.07528866938435, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 69.53681829357518, Y: 98.20333939128864, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 66.48014772198616, Y: 115.43424731950984, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 73.35962292170404, Y: 134.21383253794494, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 80.23909812142193, Y: 152.99341775638004, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 93.70311308722816, Y: 164.17242938534554, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 96.75987619079967, Y: 181.40339567655056, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 87.96273203210882, Y: 196.53152360604705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 87.96273203210882, Y: 216.53152360604705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 87.96273203210882, Y: 236.53152360604705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 87.96273203210882, Y: 256.531523606047, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 105.46273203210882, Y: 256.531523606047, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 105.46273203210882, Y: 236.53152360604705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 105.46273203210882, Y: 216.53152360604705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 105.46273203210882, Y: 196.53152360604705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 105.46273203210882, Y: 176.53152360604705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 98.8145624272909, Y: 160.34348330639244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 105.54078168333032, Y: 144.187717080139, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 121.71273203210882, Y: 137.50050317939457, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 137.8846823808873, Y: 144.187717080139, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 144.61090163692674, Y: 160.34348330639244, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 137.96273203210882, Y: 176.53152360604705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 137.96273203210882, Y: 196.53152360604705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 137.96273203210882, Y: 216.53152360604705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 137.96273203210882, Y: 236.53152360604705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 137.96273203210882, Y: 256.531523606047, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 155.46273203210882, Y: 256.531523606047, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 155.46273203210882, Y: 236.53152360604705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 155.46273203210882, Y: 216.53152360604705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 155.46273203210882, Y: 196.53152360604705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 141.12210880768137, Y: 186.5017842102758, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 132.14578633905225, Y: 171.47930832408252, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 130.1078317202291, Y: 154.09840248509676, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 135.3656159476062, Y: 137.4069420387961, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 146.99714617070046, Y: 124.33190278526735, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 162.96274422051627, Y: 117.1660932899074, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 180.4627198437014, Y: 117.1660932899074, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 196.4283178935172, Y: 124.33190278526735, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 208.05984811661145, Y: 137.4069420387961, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 213.31763234398855, Y: 154.09840248509673, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 211.2796777251654, Y: 171.47930832408252, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 202.3033552565363, Y: 186.5017842102758, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 187.96273203210882, Y: 196.53152360604705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 187.96273203210882, Y: 216.53152360604705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 187.96273203210882, Y: 236.53152360604705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 187.96273203210882, Y: 256.5315236060471, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 205.46273203210882, Y: 256.5315236060471, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 222.96273203210882, Y: 256.5315236060471, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 240.46273203210882, Y: 256.5315236060471, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 257.96273203210876, Y: 256.5315236060471, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 275.46273203210876, Y: 256.5315236060471, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 292.96273203210876, Y: 256.5315236060471, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 292.96273203210876, Y: 236.53152360604705, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 292.96273203210876, Y: 216.53152360604707, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 292.96273203210876, Y: 196.53152360604707, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 292.96273203210876, Y: 176.53152360604707, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_3.svg


Text: 'U', X: 292.96273203210876, Y: 156.53152360604707, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 292.96273203210876, Y: 136.53152360604707, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 286.2843548806195, Y: 120.35598717596429, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 292.96273203210876, Y: 104.18045074588156, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 292.96273203210876, Y: 84.18045074588156, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 292.96273203210876, Y: 64.18045074588156, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 282.51065537566444, Y: 50.14462921679757, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 282.36361175531204, Y: 32.645241496017206, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 292.5783491680322, Y: 18.435761138957673, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 309.21273203210876, Y: 13.0, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 325.8471148961853, Y: 18.435761138957673, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 336.0618523089056, Y: 32.645241496017206, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 335.9148086885532, Y: 50.14462921679751, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 325.46273203210876, Y: 64.18045074588156, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 325.46273203210876, Y: 84.18045074588156, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 325.46273203210876, Y: 104.18045074588156, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 332.141109183598, Y: 120.35598717596429, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 325.46273203210876, Y: 136.53152360604707, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 325.46273203210876, Y: 156.53152360604707, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 325.46273203210876, Y: 176.53152360604707, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 325.46273203210876, Y: 196.53152360604707, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 325.46273203210876, Y: 216.53152360604707, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 325.46273203210876, Y: 236.53152360604707, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 325.46273203210876, Y: 256.5315236060471, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 342.96273203210876, Y: 256.5315236060471, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 360.46273203210876, Y: 256.5315236060471, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 377.96273203210876, Y: 256.5315236060471, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 395.46273203210876, Y: 256.5315236060471, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 412.96273203210876, Y: 256.5315236060471, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 430.46273203210876, Y: 256.5315236060471, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 447.96273203210876, Y: 256.5315236060471, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 465.46273203210876, Y: 256.5315236060471, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 482.96273203210876, Y: 256.5315236060471, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 500.46273203210876, Y: 256.5315236060471, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 517.9627320321088, Y: 256.5315236060471, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 56.21273203210882, Y: 276.531523606047, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: -4.0, Y: 94.71003375402725, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: 85.47935119780949, Y: 94.70989584434975, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: 101.71273203210882, Y: 276.531523606047, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 154.2127174742353, Y: 176.50739240778387, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 109.45981987046252, Y: 177.9158581685602, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 213.19342932555074, Y: 200.12779724614842, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 275.0705964083778, Y: 270.673659229778, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 269.4749896500215, Y: 67.40868953171406, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 341.71273203210876, Y: 104.18045074588156, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '100', X: 352.21273203210876, Y: 276.5315236060471, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '109', X: 509.71273203210876, Y: 276.5315236060471, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'MALAT1, -22.4 ± 1.3
 kcal/mol, AUC: 0.748', X: 202.70263785238012, Y: 289.3315236060471, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 536.7127320321088, 289.3315236060471)
Updated viewBox: -9.0 0.0 550.7127320321088 294.3315236060471
Updated SVG: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_2.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_2.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGCAUUGAGGCAGCCAGCGCAGGGGCUUCUGCUGAGGGGGCAGGCGGAGCUUGAGGAAACCGCAGAUAAGUUUUUUUCUCUUUGAAAGAUAGAGAUUAAUACAACUAC', '-structureDBN', '...((..((((.((((........)))).(((((.....)))))((((............)))).............))))..))........................', '-o', '/disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_3.svg', '-title', 'MALAT1, -19.8 ± 0.9\n kcal/mol, AUC: 0.74', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,6,7,8,10,11,14,18,20,23,24,25,26,28,29,31,32,34,35,37,38,39,40,41,44,45,47,48,50,52,53,54,56,57,63,66,68,71,72,73,74,75,76,77,78,80,82,83,84,85,89,91,93,95,97,98,101,107', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,33,4,42,79,16,27,92,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '64,65,5,69,70,9,12,13,15,17,21,22,88,94,99,100,43,55,58,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,81,19,86,87,90,96,36,102,103,104,105,106,108,109,46,49,51,59,60,61']
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 120.43615170143039, Y: 390.94139388321867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 137.9361517014304, Y: 390.94139388321867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 155.4361517014304, Y: 390.94139388321867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 172.9361517014304, Y: 390.94139388321867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 172.9361517014304, Y: 370.94139388321867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 162.55646838402862, Y: 356.85195466208756, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 162.55646838402862, Y: 339.3519511382167, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 172.9361517014304, Y: 325.2625119170856, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 172.9361517014304, Y: 305.2625119170856, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 172.9361517014304, Y: 285.2625119170856, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 172.9361517014304, Y: 265.2625119170856, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 160.9043038942778, Y: 261.44555724628674, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 149.6975081884322, Y: 255.63675060284825, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 135.55537256470126, Y: 269.7788862265792, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 121.41323694097031, Y: 283.9210218503101, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 107.27110131723936, Y: 298.0631574740411, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 106.28182632291049, Y: 315.5351878094036, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 95.95102746463255, Y: 329.66052334538426, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 79.60022171672438, Y: 335.8976429088051, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 62.486454500407376, Y: 332.24121285751914, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 50.112075545198536, Y: 319.8668339023103, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 46.455645493912584, Y: 302.7530666859933, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 52.692765057333474, Y: 286.4022609380851, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 66.818100593314, Y: 276.07146207980713, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 84.29013092867655, Y: 275.08218708547827, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 98.4322665524075, Y: 260.9400514617473, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 112.57440217613845, Y: 246.7979158380164, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 126.7165377998694, Y: 232.65578021428544, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 117.7663120114758, Y: 212.1674558082902, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 115.35260684153656, Y: 189.94017513833117, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 96.05269265841514, Y: 184.69486175168308, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 76.75277847529378, Y: 179.44954836503499, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 57.452864292172364, Y: 174.2042349783869, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 38.15295010905095, Y: 168.95892159173883, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 20.78797402899579, Y: 171.12880950976106, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 6.9617853377943675, Y: 160.4009339459339, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 4.75, Y: 143.04124462102993, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 15.444480103060016, Y: 129.18920855542137, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 32.79878158478482, Y: 126.93553867740661, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 46.676584362354106, Y: 137.5965610441665, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 65.97649854547552, Y: 142.84187443081464, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 85.27641272859694, Y: 148.08718781746268, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 104.5763269117183, Y: 153.33250120411083, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 123.87624109483971, Y: 158.57781459075886, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 133.8401639504035, Y: 144.19135424332205, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 122.1431776183743, Y: 127.96851507293252, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 110.44619128634508, Y: 111.7456759025431, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 98.74920495431593, Y: 95.52283673215356, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 81.25103751435648, Y: 95.77439796767328, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 65.18408097114826, Y: 88.8388335169069, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 53.36579956841706, Y: 75.93234787991298, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 47.86861972898532, Y: 59.318192450730976, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 49.65651416276086, Y: 41.909787000898746, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 58.4159618475656, Y: 26.759829143886577, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 72.61092634859904, Y: 16.524980360124573, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 89.75221160591883, Y: 13.0, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 106.83396158362149, Y: 16.80302044582038, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 120.86076021438816, Y: 27.267152850563548, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 129.3729006153473, Y: 42.55743121972455, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 130.87771358354314, Y: 59.99258779323486, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 125.11131860619878, Y: 76.51523394260619, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 136.808304938228, Y: 92.73807311299572, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 148.50529127025715, Y: 108.96091228338514, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 160.20227760228636, Y: 125.18375145377468, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 176.99965958755828, Y: 120.27478430773851, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 194.48035281903745, Y: 119.45297888860466, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 211.66419383664405, Y: 122.76441481303698, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 227.58766404038633, Y: 130.02341589242326, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 241.3579153352431, Y: 140.8229612197274, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 252.20283319597155, Y: 154.55750732049285, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 259.51433005568344, Y: 170.45694170258406, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 262.88244150590356, Y: 187.62976398836153, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 262.11831349323336, Y: 205.11307341135844, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 257.2647915928983, Y: 221.92655981849506, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 248.59401860589662, Y: 237.12747083750574, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 236.59217518536173, Y: 249.8634731344969, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 221.9322191035418, Y: 259.4204437674491, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 205.4361517014304, Y: 265.2625119170856, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 205.4361517014304, Y: 285.2625119170856, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 205.4361517014304, Y: 305.2625119170856, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 205.4361517014304, Y: 325.2625119170856, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 215.81583501883216, Y: 339.3519511382167, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 215.81583501883216, Y: 356.85195466208756, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 205.4361517014304, Y: 370.94139388321867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 205.4361517014304, Y: 390.94139388321867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 222.9361517014304, Y: 390.94139388321867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 240.4361517014304, Y: 390.94139388321867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 257.9361517014304, Y: 390.94139388321867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 275.4361517014304, Y: 390.94139388321867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 292.9361517014304, Y: 390.94139388321867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 310.4361517014304, Y: 390.94139388321867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 327.9361517014304, Y: 390.94139388321867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 345.4361517014304, Y: 390.94139388321867, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 362.9361517014304, Y: 390.9413938832187, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 380.4361517014304, Y: 390.9413938832187, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 397.9361517014304, Y: 390.9413938832187, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 415.4361517014304, Y: 390.9413938832187, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 432.9361517014304, Y: 390.9413938832187, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 450.4361517014304, Y: 390.9413938832187, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 467.9361517014304, Y: 390.9413938832187, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 485.4361517014304, Y: 390.9413938832187, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 502.9361517014304, Y: 390.9413938832187, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 520.4361517014304, Y: 390.9413938832187, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 537.9361517014304, Y: 390.9413938832187, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 555.4361517014304, Y: 390.9413938832187, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 572.9361517014304, Y: 390.9413938832187, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 590.4361517014304, Y: 390.9413938832187, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 607.9361517014304, Y: 390.9413938832187, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 625.4361517014304, Y: 390.9413938832187, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 121.18615170143039, Y: 410.94139388321867, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: 149.1861517014304, Y: 285.2625119170856, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: 49.18405253319622, Y: 349.8125422510745, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: 97.42265720227171, Y: 204.04439536590536, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 48.1486074281909, Y: 118.29033212446632, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 49.838735821171326, Y: 105.13447621220757, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 146.97205634878634, Y: 62.48298137970659, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 265.50648551390094, Y: 144.1089216449489, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 221.6861517014304, Y: 305.2625119170856, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 289.1861517014304, Y: 410.94139388321867, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '100', X: 459.6861517014304, Y: 410.9413938832187, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '109', X: 617.1861517014304, Y: 410.9413938832187, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'MALAT1, -19.8 ± 0.9
 kcal/mol, AUC: 0.74', X: 252.0930758507152, Y: 423.74139388321873, Width: 136.5, Height: 23
Calculated bounding box: (4.75, 5.0, 644.1861517014304, 423.74139388321873)
Updated viewBox: -0.25 0.0 649.4361517014304 428.74139388321873
Updated SVG: /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_3.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/57566d7d-04db-4549-9c84-84b0a248a544/final_image/MALAT1_fold_final_3.svg
