Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_7.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 157.47 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 157.47 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 157.47 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 170.98 MB
Based on canonical annotations, the following gene is in your area of interest: LMNA(+)
write fasta - Elapsed time since the previous call: 1.95 seconds
write fasta - Current memory usage: 170.98 MB
Length of region: 107 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.18 seconds
write dat - Current memory usage: 174.26 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/fasta/LMNA.fasta" "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/ct/LMNA.ct" --SHAPE "LMNA.dat"

fold - Elapsed time since the previous call: 0.14 seconds
fold - Current memory usage: 174.26 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/ct/LMNA.ct" "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/fold_FE/LMNA.txt" -sh "LMNA.dat"

efn2 - Elapsed time since the previous call: 0.60 seconds
efn2 - Current memory usage: 174.26 MB
This region has 13 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/ct/LMNA.ct" 1 "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/fold_dbn/LMNA_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 174.26 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/ct/LMNA.ct" 2 "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/fold_dbn/LMNA_temp2.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 174.26 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/ct/LMNA.ct" 3 "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/fold_dbn/LMNA_temp3.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 174.26 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/ct/LMNA.ct" 4 "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/fold_dbn/LMNA_temp4.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 174.26 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/ct/LMNA.ct" 5 "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/fold_dbn/LMNA_temp5.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 174.26 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/ct/LMNA.ct" 6 "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/fold_dbn/LMNA_temp6.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 174.26 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/ct/LMNA.ct" 7 "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/fold_dbn/LMNA_temp7.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 174.26 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/ct/LMNA.ct" 8 "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/fold_dbn/LMNA_temp8.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 174.26 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/ct/LMNA.ct" 9 "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/fold_dbn/LMNA_temp9.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 174.26 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/ct/LMNA.ct" 10 "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/fold_dbn/LMNA_temp10.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 174.26 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/ct/LMNA.ct" 11 "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/fold_dbn/LMNA_temp11.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 174.26 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/ct/LMNA.ct" 12 "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/fold_dbn/LMNA_temp12.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 174.26 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/ct/LMNA.ct" 13 "/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/fold_dbn/LMNA_temp13.dbn"

ct2dot - Elapsed time since the previous call: 0.03 seconds
ct2dot - Current memory usage: 174.26 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGAGGCCGCACUGAGCACUGCUCUCAGUGAGAAGCGCACGCUGGAGGGCGAGCUGCAUGAUCUGCGGGGCCAGGUGGCCAAGCUUGAGGCAGCCCUAGGUGAGGCC', '-structureDBN', '....((((.((((.((...(((((((((((.........))))).)))))).(((((.......((..((((....))))..)).....))))).)).)))).))))', '-o', '/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_7.svg', '-title', 'LMNA, -48.4 ± 1.3\n kcal/mol, AUC: 0.763', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,9,13,14,16,20,21,23,25,28,29,30,32,35,37,41,43,44,45,47,48,49,51,53,55,56,59,60,62,64,65,67,68,69,70,74,75,76,77,78,83,85,86,87,89,90,93,97,99,100,101,102,104,105', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '7,8,71,72,12,15,79,17,80,81,24,26,27,91,94,95,38,106,107,50', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '96,1,40,42,11,46,82,52,84,22,61,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '66,4,73,10,18,19,88,92,33,34,98,36,39,103,54,57,58,63']
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Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'C', X: 281.8943556249852, Y: 260.78051702421106, Width: 10.5, Height: 8
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Text: 'C', X: 201.97518780839033, Y: 300.3288573802803, Width: 10.5, Height: 8
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Text: 'U', X: 201.97518780839033, Y: 320.3288573802803, Width: 10.5, Height: 8
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Text: 'A', X: 208.6535649598796, Y: 336.50439381036307, Width: 10.5, Height: 8
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Text: 'G', X: 201.97518780839033, Y: 352.6799302404458, Width: 10.5, Height: 8
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Text: 'G', X: 201.97518780839033, Y: 372.6799302404458, Width: 10.5, Height: 8
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Text: 'U', X: 201.97518780839033, Y: 392.6799302404458, Width: 10.5, Height: 8
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Text: 'G', X: 201.97518780839033, Y: 412.6799302404458, Width: 10.5, Height: 8
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Text: 'A', X: 208.6535649598796, Y: 428.85546667052853, Width: 10.5, Height: 8
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Text: 'G', X: 201.97518780839033, Y: 465.0310031006113, Width: 10.5, Height: 8
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Text: 'C', X: 201.97518780839033, Y: 485.0310031006113, Width: 10.5, Height: 8
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Text: 'C', X: 201.97518780839033, Y: 505.0310031006113, Width: 10.5, Height: 8
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Text: '1', X: 100.22518780839033, Y: 525.0310031006113, Width: 9.0, Height: 8
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Text: '10', X: 145.72518780839033, Y: 412.6799302404458, Width: 18.0, Height: 8
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Text: '20', X: 132.60730509196156, Y: 242.59679451929742, Width: 18.0, Height: 8
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Text: '30', X: 32.87826939706929, Y: 95.12508051006023, Width: 18.0, Height: 8
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Text: '40', X: 83.12508051006066, Y: 44.878269397069744, Width: 18.0, Height: 8
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Text: '50', X: 191.66386699068042, Y: 200.35770933929047, Width: 18.0, Height: 8
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Text: '60', X: 309.9933404731828, Y: 167.50646357356402, Width: 18.0, Height: 8
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Text: '70', X: 472.73831173700876, Y: 194.18049268490694, Width: 18.0, Height: 8
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Text: '80', X: 455.89966846757454, Y: 266.42905778777225, Width: 18.0, Height: 8
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Text: '90', X: 293.44508322784463, Y: 276.0055893056754, Width: 18.0, Height: 8
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Text: '100', X: 213.72518780839033, Y: 372.6799302404458, Width: 27.0, Height: 8
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Text: '107', X: 193.72518780839033, Y: 525.0310031006113, Width: 27.0, Height: 8
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Text: 'LMNA, -48.4 ± 1.3
 kcal/mol, AUC: 0.763', X: 209.9729716755669, Y: 537.8310031006113, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 557.6959433511338, 537.8310031006113)
Updated viewBox: -0.25 0.0 562.9459433511338 542.8310031006113
Updated SVG: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_7.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_7.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGAGGCCGCACUGAGCACUGCUCUCAGUGAGAAGCGCACGCUGGAGGGCGAGCUGCAUGAUCUGCGGGGCCAGGUGGCCAAGCUUGAGGCAGCCCUAGGUGAGGCC', '-structureDBN', '....((((.((((.((..((((.((((.......((((.((((....)))).)).)).......((..((((....))))..)).))))))))..)).)))).))))', '-o', '/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_12.svg', '-title', 'LMNA, -46.8 ± 1.7\n kcal/mol, AUC: 0.657', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,9,13,14,16,20,21,23,25,28,29,30,32,35,37,41,43,44,45,47,48,49,51,53,55,56,59,60,62,64,65,67,68,69,70,74,75,76,77,78,83,85,86,87,89,90,93,97,99,100,101,102,104,105', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '7,8,71,72,12,15,79,17,80,81,24,26,27,91,94,95,38,106,107,50', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '96,1,40,42,11,46,82,52,84,22,61,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '66,4,73,10,18,19,88,92,33,34,98,36,39,103,54,57,58,63']Output file: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_12.svg


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Text: 'U', X: 215.0142830097484, Y: 251.5619268587708, Width: 10.5, Height: 8
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Text: 'C', X: 213.50034218403368, Y: 268.3775031958571, Width: 10.5, Height: 8
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Text: 'U', X: 207.7672304648202, Y: 284.2579016287416, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Warning: Font Verdana not found. Using default font.
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Text: 'LMNA, -46.8 ± 1.7
 kcal/mol, AUC: 0.657', X: 76.6976034114112, Y: 733.4244544615474, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 291.1452068228224, 733.4244544615474)
Updated viewBox: -0.25 0.0 296.3952068228224 738.4244544615474
Updated SVG: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_12.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_12.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGAGGCCGCACUGAGCACUGCUCUCAGUGAGAAGCGCACGCUGGAGGGCGAGCUGCAUGAUCUGCGGGGCCAGGUGGCCAAGCUUGAGGCAGCCCUAGGUGAGGCC', '-structureDBN', '....((((.(((.((((...)))).(((((.........))))).(((((..(((.((......((..((((....))))..)).)).))).)))))..))).))))', '-o', '/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_1.svg', '-title', 'LMNA, -47.9 ± 1.6\n kcal/mol, AUC: 0.815', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,9,13,14,16,20,21,23,25,28,29,30,32,35,37,41,43,44,45,47,48,49,51,53,55,56,59,60,62,64,65,67,68,69,70,74,75,76,77,78,83,85,86,87,89,90,93,97,99,100,101,102,104,105', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '7,8,71,72,12,15,79,17,80,81,24,26,27,91,94,95,38,106,107,50', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '96,1,40,42,11,46,82,52,84,22,61,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '66,4,73,10,18,19,88,92,33,34,98,36,39,103,54,57,58,63']Output file: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_1.svg


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Text: 'A', X: 383.2663412538043, Y: 139.59577713162764, Width: 10.5, Height: 8
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Text: 'U', X: 394.7099337512444, Y: 126.35584895950512, Width: 10.5, Height: 8
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Text: 'G', X: 411.04000592158286, Y: 120.06456529383195, Width: 10.5, Height: 8
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Text: 'U', X: 442.72358109754384, Y: 132.27094678059086, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Warning: Font Verdana not found. Using default font.
Text: 'LMNA, -47.9 ± 1.6
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Updated viewBox: -6.1370392791321855 0.0 514.9031190351334 409.59202404510785
Updated SVG: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_1.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGAGGCCGCACUGAGCACUGCUCUCAGUGAGAAGCGCACGCUGGAGGGCGAGCUGCAUGAUCUGCGGGGCCAGGUGGCCAAGCUUGAGGCAGCCCUAGGUGAGGCC', '-structureDBN', '....((((.(((.((((...)))).(((((.........))))).(((((...(((((.....)))))((((....))))..(((...))).)))))..))).))))', '-o', '/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_1.svg', '-title', 'LMNA, -45.2 ± 1.2\n kcal/mol, AUC: 0.815', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,9,13,14,16,20,21,23,25,28,29,30,32,35,37,41,43,44,45,47,48,49,51,53,55,56,59,60,62,64,65,67,68,69,70,74,75,76,77,78,83,85,86,87,89,90,93,97,99,100,101,102,104,105', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '7,8,71,72,12,15,79,17,80,81,24,26,27,91,94,95,38,106,107,50', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '96,1,40,42,11,46,82,52,84,22,61,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '66,4,73,10,18,19,88,92,33,34,98,36,39,103,54,57,58,63']Output file: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_1.svg


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Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'LMNA, -45.2 ± 1.2
 kcal/mol, AUC: 0.815', X: 153.08083116508823, Y: 436.7341269588796, Width: 142.5, Height: 23
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Updated SVG: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_1.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGAGGCCGCACUGAGCACUGCUCUCAGUGAGAAGCGCACGCUGGAGGGCGAGCUGCAUGAUCUGCGGGGCCAGGUGGCCAAGCUUGAGGCAGCCCUAGGUGAGGCC', '-structureDBN', '....((((.(((((((.......))))))).........((((..(((((..(((.((......((..((((....))))..)).)).))).))))).)))).))))', '-o', '/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_5.svg', '-title', 'LMNA, -45.1 ± 1.8\n kcal/mol, AUC: 0.787', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,9,13,14,16,20,21,23,25,28,29,30,32,35,37,41,43,44,45,47,48,49,51,53,55,56,59,60,62,64,65,67,68,69,70,74,75,76,77,78,83,85,86,87,89,90,93,97,99,100,101,102,104,105', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '7,8,71,72,12,15,79,17,80,81,24,26,27,91,94,95,38,106,107,50', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '96,1,40,42,11,46,82,52,84,22,61,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '66,4,73,10,18,19,88,92,33,34,98,36,39,103,54,57,58,63']Output file: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_5.svg


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Text: 'U', X: 532.9474420424762, Y: 340.3630276568519, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'A', X: 450.47231953184564, Y: 273.28761210896477, Width: 10.5, Height: 8
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Text: 'G', X: 414.0733510127354, Y: 192.5758851649412, Width: 10.5, Height: 8
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Text: 'C', X: 246.4987661726074, Y: 180.36719593792344, Width: 10.5, Height: 8
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Text: '1', X: 144.7487661726074, Y: 200.36719593792344, Width: 9.0, Height: 8
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Text: '107', X: 238.2487661726074, Y: 200.36719593792344, Width: 27.0, Height: 8
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Text: 'LMNA, -45.1 ± 1.8
 kcal/mol, AUC: 0.787', X: 211.21249512136882, Y: 482.9782076435081, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 561.8153284910335, 482.9782076435081)
Updated viewBox: -9.0 0.0 575.8153284910335 487.9782076435081
Updated SVG: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_5.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_5.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGAGGCCGCACUGAGCACUGCUCUCAGUGAGAAGCGCACGCUGGAGGGCGAGCUGCAUGAUCUGCGGGGCCAGGUGGCCAAGCUUGAGGCAGCCCUAGGUGAGGCC', '-structureDBN', '....((((.((((.(((((((....))))).........((((....)))).(((((.......((..((((....))))..)).....))))).)).)))).))))', '-o', '/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_11.svg', '-title', 'LMNA, -44.6 ± 1.3\n kcal/mol, AUC: 0.693', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,9,13,14,16,20,21,23,25,28,29,30,32,35,37,41,43,44,45,47,48,49,51,53,55,56,59,60,62,64,65,67,68,69,70,74,75,76,77,78,83,85,86,87,89,90,93,97,99,100,101,102,104,105', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '7,8,71,72,12,15,79,17,80,81,24,26,27,91,94,95,38,106,107,50', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '96,1,40,42,11,46,82,52,84,22,61,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '66,4,73,10,18,19,88,92,33,34,98,36,39,103,54,57,58,63']Output file: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_11.svg


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Text: 'U', X: 339.27075300613365, Y: 167.05906260257743, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'G', X: 268.2747014059088, Y: 234.58640594681967, Width: 10.5, Height: 8
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Text: 'A', X: 256.0013764579836, Y: 221.46508026944852, Width: 10.5, Height: 8
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Text: 'G', X: 249.19093412030514, Y: 204.8391496797295, Width: 10.5, Height: 8
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Text: 'G', X: 248.73212572710815, Y: 186.87827031185518, Width: 10.5, Height: 8
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Text: 'C', X: 231.0753128854067, Y: 177.48481725809867, Width: 10.5, Height: 8
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Text: 'A', X: 213.41850004370525, Y: 168.09136420434223, Width: 10.5, Height: 8
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Text: 'G', X: 195.7616872020038, Y: 158.69791115058578, Width: 10.5, Height: 8
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Text: 'C', X: 178.10487436030235, Y: 149.3044580968293, Width: 10.5, Height: 8
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Text: 'C', X: 164.5042805415773, Y: 160.31689868818128, Width: 10.5, Height: 8
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Text: 'C', X: 148.39422344201415, Y: 167.15181348273538, Width: 10.5, Height: 8
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Text: 'U', X: 148.39422344201415, Y: 187.15181348273538, Width: 10.5, Height: 8
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Text: 'G', X: 148.39422344201415, Y: 239.50288634290095, Width: 10.5, Height: 8
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Text: 'U', X: 148.39422344201415, Y: 259.502886342901, Width: 10.5, Height: 8
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Text: 'C', X: 148.39422344201415, Y: 371.85395920306644, Width: 10.5, Height: 8
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Text: '1', X: 46.64422344201415, Y: 391.85395920306644, Width: 9.0, Height: 8
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Text: '90', X: 228.994332386131, Y: 198.8945286349026, Width: 18.0, Height: 8
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Text: '100', X: 160.14422344201415, Y: 239.50288634290095, Width: 27.0, Height: 8
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Text: '107', X: 140.14422344201415, Y: 391.85395920306644, Width: 27.0, Height: 8
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Text: 'LMNA, -44.6 ± 1.3
 kcal/mol, AUC: 0.693', X: 160.3102400153595, Y: 404.65395920306645, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 458.370480030719, 404.65395920306645)
Updated viewBox: -0.25 0.0 463.620480030719 409.65395920306645
Updated SVG: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_11.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_11.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGAGGCCGCACUGAGCACUGCUCUCAGUGAGAAGCGCACGCUGGAGGGCGAGCUGCAUGAUCUGCGGGGCCAGGUGGCCAAGCUUGAGGCAGCCCUAGGUGAGGCC', '-structureDBN', '....((((.((((..((.((.(((.....))).)).)).((((....)))).(((((.......((..((((....))))..)).....)))))....)))).))))', '-o', '/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_13.svg', '-title', 'LMNA, -45.2 ± 1.6\n kcal/mol, AUC: 0.649', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,9,13,14,16,20,21,23,25,28,29,30,32,35,37,41,43,44,45,47,48,49,51,53,55,56,59,60,62,64,65,67,68,69,70,74,75,76,77,78,83,85,86,87,89,90,93,97,99,100,101,102,104,105', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '7,8,71,72,12,15,79,17,80,81,24,26,27,91,94,95,38,106,107,50', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '96,1,40,42,11,46,82,52,84,22,61,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '66,4,73,10,18,19,88,92,33,34,98,36,39,103,54,57,58,63']Output file: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_13.svg


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Text: 'U', X: 319.10240118566196, Y: 97.86779940554709, Width: 10.5, Height: 8
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Text: 'G', X: 326.42460666810456, Y: 81.97330156574537, Width: 10.5, Height: 8
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Text: 'U', X: 354.6934624215588, Y: 62.276722885520485, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'G', X: 429.7448802944925, Y: 52.28797652270589, Width: 10.5, Height: 8
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Text: 'G', X: 445.6393876376363, Y: 44.96575807542081, Width: 10.5, Height: 8
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Text: 'G', X: 462.7792125088593, Y: 48.497988256880944, Width: 10.5, Height: 8
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Text: 'G', X: 480.9443581035907, Y: 40.12974557862333, Width: 10.5, Height: 8
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Text: 'C', X: 499.109503698322, Y: 31.761502900365713, Width: 10.5, Height: 8
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Text: 'C', X: 517.2746492930535, Y: 23.39326022210821, Width: 10.5, Height: 8
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Text: 'A', X: 531.3541163835413, Y: 13.0, Width: 10.5, Height: 8
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Text: 'G', X: 548.3031627732169, Y: 17.356727909476604, Width: 10.5, Height: 8
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Text: 'G', X: 555.6253900790541, Y: 33.25126278402513, Width: 10.5, Height: 8
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Text: 'U', X: 547.9221777910193, Y: 48.96468927356136, Width: 10.5, Height: 8
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Text: 'G', X: 512.7078980504907, Y: 61.27986449180435, Width: 10.5, Height: 8
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Text: 'C', X: 494.5427524557592, Y: 69.64810717006185, Width: 10.5, Height: 8
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Text: 'C', X: 476.37760686102786, Y: 78.01634984831935, Width: 10.5, Height: 8
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Text: 'A', X: 467.9237592833154, Y: 93.33896258677896, Width: 10.5, Height: 8
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Text: 'A', X: 452.02925834133384, Y: 100.66117808520198, Width: 10.5, Height: 8
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Text: 'G', X: 434.88943943796744, Y: 97.12895386244895, Width: 10.5, Height: 8
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Text: 'C', X: 416.7242971653131, Y: 105.49720375201525, Width: 10.5, Height: 8
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Text: 'U', X: 415.3607869890706, Y: 122.9440040317022, Width: 10.5, Height: 8
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Text: 'U', X: 408.0385819870823, Y: 138.8385098091353, Width: 10.5, Height: 8
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Text: 'G', X: 395.66421685899456, Y: 151.21288202257585, Width: 10.5, Height: 8
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Text: 'A', X: 379.7697152741338, Y: 158.53509612548618, Width: 10.5, Height: 8
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Text: 'G', X: 362.3229157751724, Y: 159.898616291469, Width: 10.5, Height: 8
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Text: 'G', X: 345.4838410792138, Y: 155.134630210053, Width: 10.5, Height: 8
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Text: 'C', X: 331.34170545548284, Y: 169.27676583378394, Width: 10.5, Height: 8
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Text: 'A', X: 317.1995698317519, Y: 183.4189014575149, Width: 10.5, Height: 8
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Text: 'G', X: 303.05743420802094, Y: 197.56103708124584, Width: 10.5, Height: 8
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Text: 'C', X: 288.91529858429, Y: 211.70317270497674, Width: 10.5, Height: 8
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Text: 'C', X: 294.679889884216, Y: 229.82931702681373, Width: 10.5, Height: 8
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Text: 'C', X: 293.8737719985054, Y: 248.8329428594169, Width: 10.5, Height: 8
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Text: 'U', X: 286.5948592777715, Y: 266.4057926691428, Width: 10.5, Height: 8
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Text: 'A', X: 273.72727800782764, Y: 280.41339678593005, Width: 10.5, Height: 8
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Text: 'G', X: 256.833976842144, Y: 289.1543347537203, Width: 10.5, Height: 8
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Text: 'G', X: 256.833976842144, Y: 309.1543347537203, Width: 10.5, Height: 8
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Text: 'U', X: 256.833976842144, Y: 329.1543347537203, Width: 10.5, Height: 8
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Text: 'G', X: 256.833976842144, Y: 349.1543347537203, Width: 10.5, Height: 8
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Text: 'G', X: 256.833976842144, Y: 401.50540761388584, Width: 10.5, Height: 8
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Text: 'C', X: 256.833976842144, Y: 421.50540761388584, Width: 10.5, Height: 8
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Text: 'C', X: 256.833976842144, Y: 441.50540761388584, Width: 10.5, Height: 8
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Text: '1', X: 155.083976842144, Y: 461.50540761388584, Width: 9.0, Height: 8
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Text: '90', X: 348.46521896325186, Y: 173.9678071003783, Width: 18.0, Height: 8
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Text: '100', X: 268.583976842144, Y: 309.1543347537203, Width: 27.0, Height: 8
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Text: '107', X: 248.583976842144, Y: 461.50540761388584, Width: 27.0, Height: 8
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Text: 'LMNA, -45.2 ± 1.6
 kcal/mol, AUC: 0.649', X: 214.18769503952706, Y: 474.30540761388585, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 566.1253900790541, 474.30540761388585)
Updated viewBox: -0.25 0.0 571.3753900790541 479.30540761388585
Updated SVG: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_13.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_13.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGAGGCCGCACUGAGCACUGCUCUCAGUGAGAAGCGCACGCUGGAGGGCGAGCUGCAUGAUCUGCGGGGCCAGGUGGCCAAGCUUGAGGCAGCCCUAGGUGAGGCC', '-structureDBN', '....((((.((((..(((((((((((((((.........))))).))))).)).))).......((..((((....))))..))...(((....))).)))).))))', '-o', '/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_9.svg', '-title', 'LMNA, -44.2 ± 1.2\n kcal/mol, AUC: 0.708', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,9,13,14,16,20,21,23,25,28,29,30,32,35,37,41,43,44,45,47,48,49,51,53,55,56,59,60,62,64,65,67,68,69,70,74,75,76,77,78,83,85,86,87,89,90,93,97,99,100,101,102,104,105', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '7,8,71,72,12,15,79,17,80,81,24,26,27,91,94,95,38,106,107,50', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '96,1,40,42,11,46,82,52,84,22,61,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '66,4,73,10,18,19,88,92,33,34,98,36,39,103,54,57,58,63']Output file: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_9.svg


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Text: 'G', X: 208.6831971310182, Y: 235.2077519829524, Width: 10.5, Height: 8
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Text: 'C', X: 161.9058615122637, Y: 207.9476235944365, Width: 10.5, Height: 8
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Text: 'A', X: 142.21871334671812, Y: 211.4712860510087, Width: 10.5, Height: 8
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Text: 'C', X: 126.07901805134895, Y: 218.2362528235679, Width: 10.5, Height: 8
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Text: 'G', X: 54.57460846248398, Y: 368.0020194792722, Width: 10.5, Height: 8
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Text: 'U', X: 54.57460846248398, Y: 388.0020194792722, Width: 10.5, Height: 8
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Text: 'G', X: 71.89921692496796, Y: 437.0134819803361, Width: 10.5, Height: 8
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Text: 'C', X: 22.07460846248398, Y: 408.0020194792722, Width: 10.5, Height: 8
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Text: 'G', X: 22.07460846248398, Y: 388.0020194792722, Width: 10.5, Height: 8
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Text: 'C', X: 22.07460846248398, Y: 368.0020194792722, Width: 10.5, Height: 8
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Text: 'U', X: 22.07460846248398, Y: 348.0020194792722, Width: 10.5, Height: 8
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Text: 'G', X: 22.07460846248398, Y: 328.0020194792722, Width: 10.5, Height: 8
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Text: 'G', X: 18.44088174926935, Y: 310.1749334782987, Width: 10.5, Height: 8
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Text: 'A', X: 30.37681963363815, Y: 296.4438609807506, Width: 10.5, Height: 8
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Text: 'G', X: 40.21872987774077, Y: 279.033036682429, Width: 10.5, Height: 8
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Text: 'G', X: 50.060640121843335, Y: 261.62221238410734, Width: 10.5, Height: 8
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Text: 'G', X: 59.9025503659459, Y: 244.21138808578564, Width: 10.5, Height: 8
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Text: 'C', X: 69.74446061004852, Y: 226.80056378746394, Width: 10.5, Height: 8
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Text: 'G', X: 74.82727393886285, Y: 210.054967092678, Width: 10.5, Height: 8
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Text: 'A', X: 90.96687319315714, Y: 203.29010671638179, Width: 10.5, Height: 8
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Text: 'G', X: 107.28265201749889, Y: 191.72311223401255, Width: 10.5, Height: 8
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Text: 'C', X: 119.00870895994129, Y: 178.73274701271873, Width: 10.5, Height: 8
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Text: 'U', X: 136.49276185478837, Y: 179.47967028199713, Width: 10.5, Height: 8
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Text: 'G', X: 156.17991002033392, Y: 175.956007825425, Width: 10.5, Height: 8
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Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'G', X: 260.35088568784033, Y: 355.48863399608143, Width: 10.5, Height: 8
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Text: 'C', X: 260.35088568784033, Y: 395.48863399608143, Width: 10.5, Height: 8
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Text: '100', X: 272.10088568784033, Y: 263.1375611359159, Width: 27.0, Height: 8
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Text: '107', X: 252.10088568784033, Y: 415.48863399608143, Width: 27.0, Height: 8
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Text: 'LMNA, -44.2 ± 1.2
 kcal/mol, AUC: 0.708', X: 140.2893878479332, Y: 488.76114663675094, Width: 142.5, Height: 23
Calculated bounding box: (-0.9552524085114555, 5.0, 418.3287756958664, 488.76114663675094)
Updated viewBox: -5.9552524085114555 0.0 429.28402810437785 493.76114663675094
Updated SVG: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_9.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_9.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGAGGCCGCACUGAGCACUGCUCUCAGUGAGAAGCGCACGCUGGAGGGCGAGCUGCAUGAUCUGCGGGGCCAGGUGGCCAAGCUUGAGGCAGCCCUAGGUGAGGCC', '-structureDBN', '....((((.(((.((((...)))).(((((.........))))).(((((((((((((.....)))..((((....)))).)))))......)))))..))).))))', '-o', '/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_4.svg', '-title', 'LMNA, -44.0 ± 1.4\n kcal/mol, AUC: 0.8', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,9,13,14,16,20,21,23,25,28,29,30,32,35,37,41,43,44,45,47,48,49,51,53,55,56,59,60,62,64,65,67,68,69,70,74,75,76,77,78,83,85,86,87,89,90,93,97,99,100,101,102,104,105', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '7,8,71,72,12,15,79,17,80,81,24,26,27,91,94,95,38,106,107,50', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '96,1,40,42,11,46,82,52,84,22,61,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '66,4,73,10,18,19,88,92,33,34,98,36,39,103,54,57,58,63']Output file: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_4.svg


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Text: 'U', X: 137.0000308359235, Y: 115.43428994586031, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'G', X: 150.36776043921049, Y: 361.57284100415256, Width: 10.5, Height: 8
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Text: 'G', X: 150.36776043921049, Y: 413.9239138643181, Width: 10.5, Height: 8
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Text: 'C', X: 150.36776043921049, Y: 433.9239138643181, Width: 10.5, Height: 8
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Text: 'C', X: 150.36776043921049, Y: 453.9239138643181, Width: 10.5, Height: 8
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Text: '1', X: 48.617760439210485, Y: 473.9239138643181, Width: 9.0, Height: 8
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Text: '30', X: 73.18570658955953, Y: 168.88853868388486, Width: 18.0, Height: 8
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Text: '90', X: 315.6150791555638, Y: 271.8552443515873, Width: 18.0, Height: 8
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Text: '100', X: 160.4084922029236, Y: 329.6629047584067, Width: 27.0, Height: 8
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Text: '107', X: 142.11776043921049, Y: 473.9239138643181, Width: 27.0, Height: 8
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Text: 'LMNA, -44.0 ± 1.4
 kcal/mol, AUC: 0.8', X: 110.16148233667826, Y: 486.7239138643181, Width: 124.5, Height: 23
Calculated bounding box: (-1.1370392791321393, 5.0, 340.0729646733565, 486.7239138643181)
Updated viewBox: -6.137039279132139 0.0 351.21000395248865 491.7239138643181
Updated SVG: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_4.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_4.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGAGGCCGCACUGAGCACUGCUCUCAGUGAGAAGCGCACGCUGGAGGGCGAGCUGCAUGAUCUGCGGGGCCAGGUGGCCAAGCUUGAGGCAGCCCUAGGUGAGGCC', '-structureDBN', '.((.(((.((.((((((..(((((((((((.........))))).))))))..(((((.....)))))((((....))))..)))).)))).))))).(((...)))', '-o', '/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_8.svg', '-title', 'LMNA, -44.6 ± 1.1\n kcal/mol, AUC: 0.754', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,9,13,14,16,20,21,23,25,28,29,30,32,35,37,41,43,44,45,47,48,49,51,53,55,56,59,60,62,64,65,67,68,69,70,74,75,76,77,78,83,85,86,87,89,90,93,97,99,100,101,102,104,105', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '7,8,71,72,12,15,79,17,80,81,24,26,27,91,94,95,38,106,107,50', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '96,1,40,42,11,46,82,52,84,22,61,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '66,4,73,10,18,19,88,92,33,34,98,36,39,103,54,57,58,63']Output file: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_8.svg


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Text: 'U', X: 412.38306982771894, Y: 56.06002152713984, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: '107', X: 241.9668137228598, Y: 459.61655576761433, Width: 27.0, Height: 8
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Text: 'LMNA, -44.6 ± 1.1
 kcal/mol, AUC: 0.754', X: 149.0437673734179, Y: 472.41655576761434, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 435.8375347468358, 472.41655576761434)
Updated viewBox: -0.25 0.0 441.0875347468358 477.41655576761434
Updated SVG: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_8.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_8.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGAGGCCGCACUGAGCACUGCUCUCAGUGAGAAGCGCACGCUGGAGGGCGAGCUGCAUGAUCUGCGGGGCCAGGUGGCCAAGCUUGAGGCAGCCCUAGGUGAGGCC', '-structureDBN', '....((((.((((..(((((((((((((((.........))))).))))).)).))).........(((((......(((........))).))))).)))).))))', '-o', '/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_3.svg', '-title', 'LMNA, -42.9 ± 1.0\n kcal/mol, AUC: 0.805', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,9,13,14,16,20,21,23,25,28,29,30,32,35,37,41,43,44,45,47,48,49,51,53,55,56,59,60,62,64,65,67,68,69,70,74,75,76,77,78,83,85,86,87,89,90,93,97,99,100,101,102,104,105', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '7,8,71,72,12,15,79,17,80,81,24,26,27,91,94,95,38,106,107,50', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '96,1,40,42,11,46,82,52,84,22,61,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '66,4,73,10,18,19,88,92,33,34,98,36,39,103,54,57,58,63']Output file: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_3.svg


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Text: 'U', X: 313.5752954757478, Y: 23.05423646472798, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'LMNA, -42.9 ± 1.0
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Calculated bounding box: (4.75, 0.0, 507.3274998920507, 338.8286747866836)
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Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_3.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGAGGCCGCACUGAGCACUGCUCUCAGUGAGAAGCGCACGCUGGAGGGCGAGCUGCAUGAUCUGCGGGGCCAGGUGGCCAAGCUUGAGGCAGCCCUAGGUGAGGCC', '-structureDBN', '....((((((.((...(((((....)))))...)).)).((((..(((((..(((.((......((..((((....))))..)).)).))).))))).)))).))))', '-o', '/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_10.svg', '-title', 'LMNA, -44.3 ± 1.8\n kcal/mol, AUC: 0.695', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,9,13,14,16,20,21,23,25,28,29,30,32,35,37,41,43,44,45,47,48,49,51,53,55,56,59,60,62,64,65,67,68,69,70,74,75,76,77,78,83,85,86,87,89,90,93,97,99,100,101,102,104,105', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '7,8,71,72,12,15,79,17,80,81,24,26,27,91,94,95,38,106,107,50', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '96,1,40,42,11,46,82,52,84,22,61,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '66,4,73,10,18,19,88,92,33,34,98,36,39,103,54,57,58,63']Output file: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_10.svg


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Text: 'U', X: 625.8293080669114, Y: 40.05631757987862, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'LMNA, -44.3 ± 1.8
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Updated SVG: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_10.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_10.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGAGGCCGCACUGAGCACUGCUCUCAGUGAGAAGCGCACGCUGGAGGGCGAGCUGCAUGAUCUGCGGGGCCAGGUGGCCAAGCUUGAGGCAGCCCUAGGUGAGGCC', '-structureDBN', '....((((.(((((((.......)))))))......((.((((....)))).)).(((.....)))..))))....((((..(((((.((...)).)))))..))))', '-o', '/disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_6.svg', '-title', 'LMNA, -42.8 ± 1.3\n kcal/mol, AUC: 0.768', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,9,13,14,16,20,21,23,25,28,29,30,32,35,37,41,43,44,45,47,48,49,51,53,55,56,59,60,62,64,65,67,68,69,70,74,75,76,77,78,83,85,86,87,89,90,93,97,99,100,101,102,104,105', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '7,8,71,72,12,15,79,17,80,81,24,26,27,91,94,95,38,106,107,50', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '96,1,40,42,11,46,82,52,84,22,61,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '66,4,73,10,18,19,88,92,33,34,98,36,39,103,54,57,58,63']Output file: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_6.svg


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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Text: 'C', X: 239.48892460004075, Y: 91.94360195410127, Width: 10.5, Height: 8
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Warning: Font Verdana not found. Using default font.
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Text: 'U', X: 321.451664292618, Y: 175.7158286731999, Width: 10.5, Height: 8
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Warning: Font Verdana not found. Using default font.
Text: 'A', X: 344.29464441961585, Y: 198.6139982780178, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 337.60743051887147, Y: 214.7859486267963, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'C', X: 311.1695752267811, Y: 190.77916507806708, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Text: '107', X: 335.4195752267811, Y: 336.45804704420016, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'LMNA, -42.8 ± 1.3
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Updated viewBox: -9.0 0.0 396.4195752267811 359.3537974475536
Updated SVG: /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_6.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/617c7deb-c129-4db1-8441-702bd3896c0c/final_image/LMNA_fold_final_6.svg
