Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 95% [================================================  ] -                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/645b58f2-a6e7-4593-b578-6499a1e34ddd/final_image/ZBTB20_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 159.32 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 159.32 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 159.32 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.92 MB
Based on canonical annotations, the following gene is in your area of interest: ZBTB20(-)
write fasta - Elapsed time since the previous call: 0.57 seconds
write fasta - Current memory usage: 172.92 MB
Length of region: 89 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.21 seconds
write dat - Current memory usage: 176.25 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/645b58f2-a6e7-4593-b578-6499a1e34ddd/fasta/ZBTB20.fasta" "/disk1/www/rails/humanrnamap/public/result/645b58f2-a6e7-4593-b578-6499a1e34ddd/ct/ZBTB20.ct" --SHAPE "ZBTB20.dat"

fold - Elapsed time since the previous call: 0.18 seconds
fold - Current memory usage: 176.25 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/645b58f2-a6e7-4593-b578-6499a1e34ddd/ct/ZBTB20.ct" "/disk1/www/rails/humanrnamap/public/result/645b58f2-a6e7-4593-b578-6499a1e34ddd/fold_FE/ZBTB20.txt" -sh "ZBTB20.dat"

efn2 - Elapsed time since the previous call: 0.50 seconds
efn2 - Current memory usage: 176.25 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/645b58f2-a6e7-4593-b578-6499a1e34ddd/ct/ZBTB20.ct" 1 "/disk1/www/rails/humanrnamap/public/result/645b58f2-a6e7-4593-b578-6499a1e34ddd/fold_dbn/ZBTB20_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.25 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AAAUUGUUGUCAGUUAUCAAACAAACAAACAGAAAAAUUGUUUGGAAAAACCUUGCAUACGCCUUUUCUAUCAAGUGCUUUAAAAUAUA', '-structureDBN', '.....(((((..(((....)))..)))).).(((((..(((.((.((.....)).)).)))..))))).....................', '-o', '/disk1/www/rails/humanrnamap/public/result/645b58f2-a6e7-4593-b578-6499a1e34ddd/final_image/ZBTB20_fold_1.svg', '-title', 'ZBTB20, -8.6 ± 1.1\n kcal/mol, AUC: 0.475', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '4,5,6,7,8,9,10,13,14,15,17,32,38,39,40,41,42,43,44,45,53,54,55,58,61,64,65,66,67,69,71,75,76,77,79,80,81,86,88', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,33,35,59,78,48,83,89,27', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '2,70,12,16,18,82,84,21,22,23,25,26,28,29,31,34,46,47,49,50,52,62,63', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '3,68,72,73,74,11,19,20,85,87,24,30,36,37,51,56,57,60']
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Text: 'ZBTB20, -8.6 ± 1.1
 kcal/mol, AUC: 0.475', X: 216.25, Y: 370.21204811311657, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 574.0, 370.21204811311657)
Updated viewBox: -0.25 -5.0 579.25 380.21204811311657
Updated SVG: /disk1/www/rails/humanrnamap/public/result/645b58f2-a6e7-4593-b578-6499a1e34ddd/final_image/ZBTB20_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/645b58f2-a6e7-4593-b578-6499a1e34ddd/final_image/ZBTB20_fold_final_1.svg
