Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 159.13 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 159.13 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 159.13 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.75 MB
Based on canonical annotations, the following gene is in your area of interest: MLLT6(+)
write fasta - Elapsed time since the previous call: 0.58 seconds
write fasta - Current memory usage: 172.75 MB
Length of region: 113 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.17 seconds
write dat - Current memory usage: 176.27 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/fasta/MLLT6.fasta" "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/ct/MLLT6.ct" --SHAPE "MLLT6.dat"

fold - Elapsed time since the previous call: 0.17 seconds
fold - Current memory usage: 176.27 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/ct/MLLT6.ct" "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/fold_FE/MLLT6.txt" -sh "MLLT6.dat"

efn2 - Elapsed time since the previous call: 0.61 seconds
efn2 - Current memory usage: 176.27 MB
This region has 15 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/ct/MLLT6.ct" 1 "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/fold_dbn/MLLT6_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 176.27 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/ct/MLLT6.ct" 2 "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/fold_dbn/MLLT6_temp2.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.27 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/ct/MLLT6.ct" 3 "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/fold_dbn/MLLT6_temp3.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.27 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/ct/MLLT6.ct" 4 "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/fold_dbn/MLLT6_temp4.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.27 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/ct/MLLT6.ct" 5 "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/fold_dbn/MLLT6_temp5.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.27 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/ct/MLLT6.ct" 6 "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/fold_dbn/MLLT6_temp6.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.27 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/ct/MLLT6.ct" 7 "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/fold_dbn/MLLT6_temp7.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.27 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/ct/MLLT6.ct" 8 "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/fold_dbn/MLLT6_temp8.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.27 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/ct/MLLT6.ct" 9 "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/fold_dbn/MLLT6_temp9.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.27 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/ct/MLLT6.ct" 10 "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/fold_dbn/MLLT6_temp10.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 176.27 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/ct/MLLT6.ct" 11 "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/fold_dbn/MLLT6_temp11.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 176.27 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/ct/MLLT6.ct" 12 "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/fold_dbn/MLLT6_temp12.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.27 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/ct/MLLT6.ct" 13 "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/fold_dbn/MLLT6_temp13.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.27 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/ct/MLLT6.ct" 14 "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/fold_dbn/MLLT6_temp14.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.27 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/ct/MLLT6.ct" 15 "/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/fold_dbn/MLLT6_temp15.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.27 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CUGGCCUGAGGGGUCCUAGCCUGGAGCAGGCGCCUGCGCCCAGACCCUGGAGAGCCUUGACCCAGAGCCUGUGCUGAGGUCCAGGGAGUGUGGAGAGCUCCUGGUGUCGAGGA', '-structureDBN', '((..((...((((((......(((.((((....))))..)))))))))))..))((((((((((((((((.(((...............))).)).))).)))).))))))).', '-o', '/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_12.svg', '-title', 'MLLT6, -50.3 ± 1.8\n kcal/mol, AUC: 0.582', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,7,8,10,11,12,13,14,17,19,22,23,24,26,29,30,32,35,36,38,43,48,49,50,52,54,57,58,59,65,67,70,71,72,73,75,76,78,79,80,84,85,86,88,89,90,91,92,93,95,97,99,102,103,104,105,106,107,109,111,112', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '64,1,6,9,74,16,82,20,21,27,98,101,40,108,45,46,47,113,55,61,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '68,69,77,15,81,28,94,31,33,34,100,37,39,41,44,56,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '96,66,5,42,110,18,51,83,53,87,25,60']Output file: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_12.svg


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Text: 'G', X: 123.25121348450176, Y: 100.4488546393203, Width: 10.5, Height: 8
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Text: 'G', X: 307.2814259693341, Y: 349.7401157935791, Width: 10.5, Height: 8
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Text: 'G', X: 307.2814259693341, Y: 369.7401157935791, Width: 10.5, Height: 8
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Text: 'A', X: 324.7814259693341, Y: 369.7401157935791, Width: 10.5, Height: 8
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Text: '110', X: 319.0314259693341, Y: 329.7401157935791, Width: 27.0, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_7.svg


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Text: '113', X: 316.5314259693341, Y: 389.7401157935791, Width: 27.0, Height: 8
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Text: 'MLLT6, -50.3 ± 1.8
 kcal/mol, AUC: 0.582', X: 189.96437278225443, Y: 402.5401157935791, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 526.1543031499332, 402.5401157935791)
Updated viewBox: -9.0 0.0 540.1543031499332 407.5401157935791
Updated SVG: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_12.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_12.svg
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Text: 'U', X: 224.78142596933412, Y: 349.7401157935791, Width: 10.5, Height: 8
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Text: 'C', X: 274.7814259693341, Y: 349.7401157935791, Width: 10.5, Height: 8
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Text: 'G', X: 56.882658715896866, Y: 13.0, Width: 10.5, Height: 8
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Text: 'G', X: 74.38247303542477, Y: 13.084268331752241, Width: 10.5, Height: 8
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Text: 'A', X: 90.78404820429193, Y: 19.186639538888812, Width: 10.5, Height: 8
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Text: 'G', X: 104.08311881476837, Y: 30.561406493303593, Width: 10.5, Height: 8
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Text: 'U', X: 112.65454417731053, Y: 45.81857758181343, Width: 10.5, Height: 8
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Text: 'G', X: 115.45089981151278, Y: 63.093733081453706, Width: 10.5, Height: 8
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Text: 'U', X: 134.2670058934416, Y: 69.87268225618595, Width: 10.5, Height: 8
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Text: 'G', X: 153.0831119753704, Y: 76.65163143091809, Width: 10.5, Height: 8
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Text: 'G', X: 170.56479920959498, Y: 75.85124936918157, Width: 10.5, Height: 8
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Text: 'A', X: 183.51920728042356, Y: 87.61701800257106, Width: 10.5, Height: 8
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Text: 'G', X: 202.33528960402697, Y: 94.39603312214251, Width: 10.5, Height: 8
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Text: 'A', X: 219.69655928565027, Y: 96.5951954722085, Width: 10.5, Height: 8
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Text: 'G', X: 229.0751479092524, Y: 111.3699061438, Width: 10.5, Height: 8
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Text: 'C', X: 243.21728353298334, Y: 125.51204176753095, Width: 10.5, Height: 8
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Text: 'U', X: 257.3594191567143, Y: 139.654177391262, Width: 10.5, Height: 8
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Text: 'C', X: 271.59848170006615, Y: 148.2311119393795, Width: 10.5, Height: 8
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Text: 'C', X: 274.8413560136478, Y: 164.53443903977498, Width: 10.5, Height: 8
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Text: 'U', X: 283.3528478592169, Y: 182.63290600697442, Width: 10.5, Height: 8
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Text: 'G', X: 291.86433970478606, Y: 200.73137297417387, Width: 10.5, Height: 8
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Text: 'G', X: 300.37583155035526, Y: 218.82983994137336, Width: 10.5, Height: 8
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Text: 'U', X: 311.0970604615777, Y: 232.66115407391945, Width: 10.5, Height: 8
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Text: 'G', X: 307.2814259693341, Y: 249.74011579357912, Width: 10.5, Height: 8
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Text: 'U', X: 307.2814259693341, Y: 269.7401157935791, Width: 10.5, Height: 8
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Text: 'C', X: 307.2814259693341, Y: 289.7401157935791, Width: 10.5, Height: 8
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Text: 'G', X: 307.2814259693341, Y: 309.7401157935791, Width: 10.5, Height: 8
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Text: 'A', X: 307.2814259693341, Y: 329.7401157935791, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_14.svg


Text: 'G', X: 307.2814259693341, Y: 349.7401157935791, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 307.2814259693341, Y: 369.7401157935791, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 324.7814259693341, Y: 369.7401157935791, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 140.53142596933412, Y: 389.7401157935791, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: 159.01437587257007, Y: 240.00346505751259, Width: 18.0, Height: 8
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Text: '20', X: 229.10118888199594, Y: 90.69207083455694, Width: 18.0, Height: 8
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Text: '30', X: 294.7080178873682, Y: 121.54647064819528, Width: 18.0, Height: 8
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Text: '40', X: 226.86588905532258, Y: 255.94942411556266, Width: 18.0, Height: 8
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Text: '50', X: 219.94483646700235, Y: 300.9695168768924, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 251.03142596933412, Y: 269.7401157935791, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 156.2475311380046, Y: 133.80102006026829, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: -4.0, Y: 86.81335341066148, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 125.91097050351866, Y: 49.01986044709338, Width: 18.0, Height: 8
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Text: '100', X: 279.7127767107201, Y: 136.73285777606043, Width: 27.0, Height: 8
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Text: '110', X: 319.0314259693341, Y: 329.7401157935791, Width: 27.0, Height: 8
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Text: '113', X: 316.5314259693341, Y: 389.7401157935791, Width: 27.0, Height: 8
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Text: 'MLLT6, -49.5 ± 1.1
 kcal/mol, AUC: 0.628', X: 104.05797201481664, Y: 402.5401157935791, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 346.0314259693341, 402.5401157935791)
Updated viewBox: -9.0 0.0 360.0314259693341 407.5401157935791
Updated SVG: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_7.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_7.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CUGGCCUGAGGGGUCCUAGCCUGGAGCAGGCGCCUGCGCCCAGACCCUGGAGAGCCUUGACCCAGAGCCUGUGCUGAGGUCCAGGGAGUGUGGAGAGCUCCUGGUGUCGAGGA', '-structureDBN', '((..((...((((((......(((.((((....))))..)))))))))))..))((((((((((((((...........((((.......))))..))).)))).))))))).', '-o', '/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_14.svg', '-title', 'MLLT6, -48.8 ± 1.9\n kcal/mol, AUC: 0.578', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,7,8,10,11,12,13,14,17,19,22,23,24,26,29,30,32,35,36,38,43,48,49,50,52,54,57,58,59,65,67,70,71,72,73,75,76,78,79,80,84,85,86,88,89,90,91,92,93,95,97,99,102,103,104,105,106,107,109,111,112', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '64,1,6,9,74,16,82,20,21,27,98,101,40,108,45,46,47,113,55,61,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '68,69,77,15,81,28,94,31,33,34,100,37,39,41,44,56,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '96,66,5,42,110,18,51,83,53,87,25,60']
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Text: 'C', X: 99.73278186509563, Y: 331.3240497528549, Width: 10.5, Height: 8
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Text: 'U', X: 228.7222496606477, Y: 209.22188096282227, Width: 10.5, Height: 8
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Text: 'A', X: 245.66994592730032, Y: 204.86002830905218, Width: 10.5, Height: 8
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Text: 'G', X: 262.49310203164646, Y: 209.67994386938224, Width: 10.5, Height: 8
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Text: 'C', X: 274.5597698812361, Y: 222.35455212082698, Width: 10.5, Height: 8
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Text: 'C', X: 278.54761335902543, Y: 239.39413168478822, Width: 10.5, Height: 8
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Text: 'U', X: 273.3586527592229, Y: 256.1071462307523, Width: 10.5, Height: 8
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Text: 'G', X: 282.8656876494923, Y: 273.70306301832545, Width: 10.5, Height: 8
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Text: 'G', X: 292.37272253976187, Y: 291.2989798058986, Width: 10.5, Height: 8
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Text: 'A', X: 307.7774216449027, Y: 301.0429290633557, Width: 10.5, Height: 8
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Text: 'G', X: 312.70889019612946, Y: 318.59086112329044, Width: 10.5, Height: 8
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Text: 'C', X: 371.5455833999713, Y: 388.03413075888676, Width: 10.5, Height: 8
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Text: 'G', X: 359.17118944316303, Y: 400.4085247156951, Width: 10.5, Height: 8
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Text: 'C', X: 341.7622887587947, Y: 398.62486876277455, Width: 10.5, Height: 8
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Text: 'C', X: 332.1543266787595, Y: 383.99823838304616, Width: 10.5, Height: 8
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Text: 'U', X: 318.01219105502855, Y: 369.8561027593152, Width: 10.5, Height: 8
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Text: 'G', X: 303.8700554312976, Y: 355.7139671355842, Width: 10.5, Height: 8
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Text: 'C', X: 289.72791980756665, Y: 341.57183151185325, Width: 10.5, Height: 8
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Text: 'G', X: 273.23797270641194, Y: 337.387582601006, Width: 10.5, Height: 8
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Text: 'C', X: 263.07296732901733, Y: 323.74577333594334, Width: 10.5, Height: 8
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Text: 'C', X: 263.7793577599555, Y: 306.7479115025866, Width: 10.5, Height: 8
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Text: 'C', X: 254.27232286968604, Y: 289.1519947150134, Width: 10.5, Height: 8
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Text: 'A', X: 244.76528797941648, Y: 271.55607792744024, Width: 10.5, Height: 8
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Text: 'A', X: 210.55969438134952, Y: 276.6281153117052, Width: 10.5, Height: 8
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Text: 'C', X: 193.17725229195875, Y: 286.52006693961846, Width: 10.5, Height: 8
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Text: 'C', X: 175.794810202568, Y: 296.41201856753173, Width: 10.5, Height: 8
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Text: 'C', X: 158.41236811317725, Y: 306.303970195445, Width: 10.5, Height: 8
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Text: 'U', X: 141.0299260237865, Y: 316.1959218233584, Width: 10.5, Height: 8
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Text: 'G', X: 132.23278186509563, Y: 331.3240497528549, Width: 10.5, Height: 8
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Text: 'G', X: 132.23278186509563, Y: 351.3240497528549, Width: 10.5, Height: 8
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Text: 'A', X: 142.6124651824974, Y: 365.4134889739859, Width: 10.5, Height: 8
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Text: 'G', X: 142.6124651824974, Y: 382.91349249785685, Width: 10.5, Height: 8
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Text: 'A', X: 132.23278186509563, Y: 397.00293171898795, Width: 10.5, Height: 8
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Text: 'G', X: 132.23278186509563, Y: 417.00293171898795, Width: 10.5, Height: 8
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Text: 'C', X: 149.73278186509563, Y: 417.00293171898795, Width: 10.5, Height: 8
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Text: 'C', X: 149.73278186509563, Y: 397.00293171898795, Width: 10.5, Height: 8
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Text: 'U', X: 149.73278186509563, Y: 377.00293171898795, Width: 10.5, Height: 8
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Text: 'U', X: 149.73278186509563, Y: 357.00293171898795, Width: 10.5, Height: 8
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Text: 'G', X: 149.73278186509563, Y: 337.00293171898795, Width: 10.5, Height: 8
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Text: 'A', X: 149.73278186509563, Y: 317.00293171898795, Width: 10.5, Height: 8
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Text: 'C', X: 149.73278186509563, Y: 297.00293171898795, Width: 10.5, Height: 8
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Text: 'C', X: 145.91717862441766, Y: 279.92383011583206, Width: 10.5, Height: 8
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Text: 'C', X: 137.4056867788485, Y: 261.8253631486326, Width: 10.5, Height: 8
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Text: 'A', X: 128.89419493327932, Y: 243.7268961814332, Width: 10.5, Height: 8
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Text: 'G', X: 120.38270308771013, Y: 225.62842921423376, Width: 10.5, Height: 8
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Text: 'A', X: 109.329804663913, Y: 209.8979637052336, Width: 10.5, Height: 8
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Text: 'G', X: 95.18766904018204, Y: 195.7558280815026, Width: 10.5, Height: 8
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Text: 'C', X: 81.04553341645106, Y: 181.61369245777166, Width: 10.5, Height: 8
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Text: 'C', X: 64.06824672803259, Y: 186.8753364774874, Width: 10.5, Height: 8
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Text: 'U', X: 46.30831040036534, Y: 186.16977093966182, Width: 10.5, Height: 8
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Text: 'G', X: 29.801939723680846, Y: 179.57789046631785, Width: 10.5, Height: 8
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Text: 'U', X: 16.44162596247395, Y: 167.85546847710975, Width: 10.5, Height: 8
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Text: 'C', X: 4.75, Y: 134.82913964152738, Width: 10.5, Height: 8
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Text: 'U', X: 7.759158119866356, Y: 117.31177315850243, Width: 10.5, Height: 8
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Text: 'G', X: 126.00603058912986, Y: 28.30262109009732, Width: 10.5, Height: 8
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Text: 'G', X: 138.27599077202487, Y: 15.824709825039463, Width: 10.5, Height: 8
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Text: 'G', X: 155.5465207822131, Y: 13.0, Width: 10.5, Height: 8
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Text: 'A', X: 171.15246926852222, Y: 20.918621361774626, Width: 10.5, Height: 8
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Text: 'G', X: 179.0710906302968, Y: 36.52456984808373, Width: 10.5, Height: 8
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Text: 'U', X: 176.2463808052574, Y: 53.7950998582719, Width: 10.5, Height: 8
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Text: 'G', X: 163.76846954019953, Y: 66.06506004116693, Width: 10.5, Height: 8
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Text: 'G', X: 132.31077505247575, Y: 82.74128596638388, Width: 10.5, Height: 8
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Text: 'A', X: 104.02650380501387, Y: 111.02555721384579, Width: 10.5, Height: 8
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Text: 'G', X: 109.0892333619947, Y: 126.62766238932215, Width: 10.5, Height: 8
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Text: 'A', X: 109.0892333619947, Y: 143.03061689373249, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_8.svg


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Text: 'U', X: 132.31077505247578, Y: 186.91699331667087, Width: 10.5, Height: 8
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Text: 'C', X: 146.5498375958276, Y: 195.49392786478836, Width: 10.5, Height: 8
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Text: 'U', X: 158.3042037549784, Y: 229.89572193238328, Width: 10.5, Height: 8
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Text: 'U', X: 182.23278186509563, Y: 317.00293171898795, Width: 10.5, Height: 8
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Text: 'C', X: 182.23278186509563, Y: 337.00293171898795, Width: 10.5, Height: 8
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Text: 'G', X: 182.23278186509563, Y: 357.00293171898795, Width: 10.5, Height: 8
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Text: 'G', X: 182.23278186509563, Y: 417.00293171898795, Width: 10.5, Height: 8
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Text: '1', X: 100.48278186509563, Y: 437.00293171898795, Width: 9.0, Height: 8
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Text: '113', X: 191.48278186509563, Y: 437.00293171898795, Width: 27.0, Height: 8
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Text: 'MLLT6, -48.8 ± 1.9
 kcal/mol, AUC: 0.578', X: 122.14779169998565, Y: 449.80293171898796, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 401.1056590456947, 449.80293171898796)
Updated viewBox: -0.25 0.0 406.3556590456947 454.80293171898796
Updated SVG: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_14.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_14.svg
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Text: 'C', X: 155.96254755518993, Y: 360.2244715675841, Width: 10.5, Height: 8
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Text: 'C', X: 155.96254755518993, Y: 340.2244715675841, Width: 10.5, Height: 8
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Text: 'G', X: 155.96254755518993, Y: 280.2244715675841, Width: 10.5, Height: 8
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Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_1.svg


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Text: '113', X: 197.71254755518993, Y: 380.2244715675841, Width: 27.0, Height: 8
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Text: 'MLLT6, -47.2 ± 1.8
 kcal/mol, AUC: 0.621', X: 125.26267454503278, Y: 393.0244715675841, Width: 142.5, Height: 23
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Text: 'C', X: 15.179215741261487, Y: 472.5268408173396, Width: 10.5, Height: 8
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Text: 'C', X: 79.88995281096334, Y: 367.70609453198836, Width: 10.5, Height: 8
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Text: 'G', X: 96.95566395651792, Y: 212.61736393850697, Width: 10.5, Height: 8
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Text: 'A', X: 94.77342388232933, Y: 169.10771835733578, Width: 10.5, Height: 8
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Text: 'G', X: 111.33585501853452, Y: 164.87481401646676, Width: 10.5, Height: 8
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Text: 'C', X: 125.47799064226541, Y: 150.7326783927357, Width: 10.5, Height: 8
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Text: 'C', X: 139.62012626599636, Y: 136.59054276900474, Width: 10.5, Height: 8
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Text: 'U', X: 153.7622618897273, Y: 122.44840714527379, Width: 10.5, Height: 8
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Text: 'U', X: 167.90439751345824, Y: 108.30627152154284, Width: 10.5, Height: 8
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Text: 'G', X: 182.04653313718916, Y: 94.16413589781189, Width: 10.5, Height: 8
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Text: 'A', X: 181.85396844475298, Y: 76.66519120837006, Width: 10.5, Height: 8
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Text: 'C', X: 190.54832203926247, Y: 61.47775027914963, Width: 10.5, Height: 8
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Text: 'C', X: 205.7357629684829, Y: 52.783396684640024, Width: 10.5, Height: 8
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Text: 'C', X: 223.23470765792482, Y: 52.97596137707626, Width: 10.5, Height: 8
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Text: 'A', X: 237.37684328165574, Y: 38.83382575334531, Width: 10.5, Height: 8
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Text: 'MLLT6, -47.7 ± 1.6
 kcal/mol, AUC: 0.777', X: 115.01944147998745, Y: 675.9447951637594, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 376.0388829599749, 675.9447951637594)
Updated viewBox: -0.25 0.0 381.2888829599749 680.9447951637594
Updated SVG: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_1.svg/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_15.svg


Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_1.svg
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Text: 'G', X: 146.24887765344184, Y: 300.8996673934958, Width: 10.5, Height: 8
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Text: 'C', X: 163.74887765344184, Y: 280.8996673934958, Width: 10.5, Height: 8
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Text: 'G', X: 163.74887765344184, Y: 220.8996673934958, Width: 10.5, Height: 8
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Text: 'A', X: 163.74887765344184, Y: 200.8996673934958, Width: 10.5, Height: 8
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Text: 'C', X: 163.74887765344184, Y: 180.8996673934958, Width: 10.5, Height: 8
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Text: 'G', X: 196.24887765344184, Y: 300.8996673934958, Width: 10.5, Height: 8
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Text: 'A', X: 213.74887765344184, Y: 300.8996673934958, Width: 10.5, Height: 8
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Text: '1', X: 114.49887765344184, Y: 320.8996673934958, Width: 9.0, Height: 8
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Text: '10', X: 126.89170922318368, Y: 153.6634249369753, Width: 18.0, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_6.svg


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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Text: 'MLLT6, -47.7 ± 2.0
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Updated SVG: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_15.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_15.svg
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'A', X: 81.21828509390377, Y: 357.71580054417296, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'C', X: 63.029967657602015, Y: 308.3803890073819, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Text: 'G', X: 4.75, Y: 236.50141043127672, Width: 10.5, Height: 8
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Text: 'A', X: 9.225755799130695, Y: 219.58348143472386, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 23.57075831215417, Y: 209.5600282170347, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 31.984493963778277, Y: 191.41590926943655, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 40.39822961540233, Y: 173.27179032183835, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 48.811965267026494, Y: 155.1276713742402, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 57.225700918650546, Y: 136.98355242664206, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 65.63943657027471, Y: 118.83943347904392, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 59.4386207701009, Y: 102.4748321633324, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 62.377493451122064, Y: 85.22335917768214, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 73.64688948389647, Y: 71.83489377397154, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 90.14398568098977, Y: 65.9957063413126, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 98.55773076582443, Y: 47.851591768057006, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 106.97147585065898, Y: 29.70747719480164, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'C', X: 142.95410988032035, Y: 27.131090932290363, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'A', X: 222.22206885844167, Y: 397.10474154834634, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 239.80943666203513, Y: 406.627582182376, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'C', X: 275.5654531629462, Y: 443.5200028892595, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 290.5364457767597, Y: 452.58197729648117, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 294.7537372920047, Y: 469.5662185887922, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 306.61622160007266, Y: 485.6684378780965, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_12.svg


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Warning: Font Verdana not found. Using default font.
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Text: '113', X: 356.30476255698227, Y: 681.0899431579653, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'MLLT6, -48.2 ± 1.5
 kcal/mol, AUC: 0.663', X: 118.65238127849113, Y: 693.8899431579653, Width: 142.5, Height: 23
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Updated SVG: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_6.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_6.svg
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'G', X: 187.28142596933404, Y: 369.7401157935791, Width: 10.5, Height: 8
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'A', X: 239.78142596933404, Y: 369.7401157935791, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 257.281425969334, Y: 369.7401157935791, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 274.781425969334, Y: 369.7401157935791, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 274.781425969334, Y: 349.7401157935791, Width: 10.5, Height: 8
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Text: 'U', X: 274.781425969334, Y: 329.74011579357915, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 274.781425969334, Y: 309.74011579357915, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 274.781425969334, Y: 289.74011579357915, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 274.781425969334, Y: 269.74011579357915, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 274.781425969334, Y: 249.74011579357915, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 270.96582272865606, Y: 232.66101419042326, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'G', X: 40.42307500371689, Y: 18.944132097407305, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 56.88265871589684, Y: 13.0, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 74.38247303542474, Y: 13.084268331752241, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_11.svg


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Text: 'MLLT6, -47.9 ± 1.2
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Updated SVG: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_12.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_12.svg
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Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Updated SVG: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_11.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_11.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CUGGCCUGAGGGGUCCUAGCCUGGAGCAGGCGCCUGCGCCCAGACCCUGGAGAGCCUUGACCCAGAGCCUGUGCUGAGGUCCAGGGAGUGUGGAGAGCUCCUGGUGUCGAGGA', '-structureDBN', '...(((((..((((....))))....))))).((((((((((..((((((...((((((...(((...)))...))))))))))))..)).(((....))).)))))..))).', '-o', '/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_10.svg', '-title', 'MLLT6, -46.3 ± 1.7\n kcal/mol, AUC: 0.61', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,7,8,10,11,12,13,14,17,19,22,23,24,26,29,30,32,35,36,38,43,48,49,50,52,54,57,58,59,65,67,70,71,72,73,75,76,78,79,80,84,85,86,88,89,90,91,92,93,95,97,99,102,103,104,105,106,107,109,111,112', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '64,1,6,9,74,16,82,20,21,27,98,101,40,108,45,46,47,113,55,61,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '68,69,77,15,81,28,94,31,33,34,100,37,39,41,44,56,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '96,66,5,42,110,18,51,83,53,87,25,60']Output file: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_10.svg


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Text: 'C', X: 459.05226740032623, Y: 231.9318672158241, Width: 10.5, Height: 8
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Text: 'U', X: 459.05226740032623, Y: 211.9318672158241, Width: 10.5, Height: 8
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Text: 'G', X: 424.08967945954134, Y: 167.52471323351932, Width: 10.5, Height: 8
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Text: 'C', X: 409.9475438358104, Y: 153.38257760978837, Width: 10.5, Height: 8
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Text: 'C', X: 395.80540821207944, Y: 139.24044198605745, Width: 10.5, Height: 8
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Text: 'C', X: 382.300521786584, Y: 139.24044198605745, Width: 10.5, Height: 8
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Text: 'A', X: 368.15838616285305, Y: 153.3825776097884, Width: 10.5, Height: 8
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Text: 'C', X: 321.7164033438495, Y: 199.82456042879198, Width: 10.5, Height: 8
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Text: 'G', X: 216.64223135052117, Y: 269.22841581024, Width: 10.5, Height: 8
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Text: 'C', X: 178.07041385000622, Y: 258.6352626107923, Width: 10.5, Height: 8
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Text: 'U', X: 158.78450509974874, Y: 253.33868601106843, Width: 10.5, Height: 8
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Text: 'U', X: 139.49859634949127, Y: 248.0421094113446, Width: 10.5, Height: 8
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Text: 'G', X: 120.21268759923379, Y: 242.74553281162073, Width: 10.5, Height: 8
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Text: 'C', X: 87.59925475419129, Y: 251.5230451248655, Width: 10.5, Height: 8
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Text: 'C', X: 72.53112760005729, Y: 242.62350373911298, Width: 10.5, Height: 8
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Text: 'C', X: 64.04355904367685, Y: 227.31953455427026, Width: 10.5, Height: 8
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Text: 'G', X: 4.75, Y: 194.18375799358768, Width: 10.5, Height: 8
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Text: 'C', X: 256.3090260840939, Y: 219.26999691142203, Width: 10.5, Height: 8
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Text: '110', X: 503.3022659354217, Y: 211.92421240160468, Width: 27.0, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_3.svg


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Text: 'MLLT6, -46.3 ± 1.7
 kcal/mol, AUC: 0.61', X: 195.4011337001631, Y: 301.13348019214493, Width: 133.5, Height: 23
Calculated bounding box: (4.75, 5.0, 530.3022659354217, 301.13348019214493)
Updated viewBox: -0.25 0.0 535.5522659354217 306.13348019214493
Updated SVG: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_10.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_10.svg
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Text: 'C', X: 20.476716844597007, Y: 80.6704648395339, Width: 10.5, Height: 8
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Text: 'G', X: 446.6368753469784, Y: 534.9666666577125, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_2.svg


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Text: '1', X: 277.3868753469784, Y: 594.9666666577125, Width: 9.0, Height: 8
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Text: '60', X: -4.0, Y: 140.73168791585476, Width: 18.0, Height: 8
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Text: '113', X: 438.3868753469784, Y: 594.9666666577125, Width: 27.0, Height: 8
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Text: 'MLLT6, -45.1 ± 1.5
 kcal/mol, AUC: 0.728', X: 168.4749305709827, Y: 607.7666666577124, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 484.88186010035554, 607.7666666577124)
Updated viewBox: -9.0 0.0 498.88186010035554 612.7666666577124
Updated SVG: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_3.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_3.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CUGGCCUGAGGGGUCCUAGCCUGGAGCAGGCGCCUGCGCCCAGACCCUGGAGAGCCUUGACCCAGAGCCUGUGCUGAGGUCCAGGGAGUGUGGAGAGCUCCUGGUGUCGAGGA', '-structureDBN', '...(((((..((((....))))....))))).......((..(((((.((((..(((((((((((........))).))).)))))...........)))).)).)))..)).', '-o', '/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_2.svg', '-title', 'MLLT6, -46.1 ± 1.5\n kcal/mol, AUC: 0.735', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,7,8,10,11,12,13,14,17,19,22,23,24,26,29,30,32,35,36,38,43,48,49,50,52,54,57,58,59,65,67,70,71,72,73,75,76,78,79,80,84,85,86,88,89,90,91,92,93,95,97,99,102,103,104,105,106,107,109,111,112', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '64,1,6,9,74,16,82,20,21,27,98,101,40,108,45,46,47,113,55,61,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '68,69,77,15,81,28,94,31,33,34,100,37,39,41,44,56,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '96,66,5,42,110,18,51,83,53,87,25,60']
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Text: 'G', X: 280.95591595337726, Y: 353.92664987917715, Width: 10.5, Height: 8
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Text: 'C', X: 298.45591595337726, Y: 353.92664987917715, Width: 10.5, Height: 8
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Text: 'C', X: 298.45591595337726, Y: 333.92664987917715, Width: 10.5, Height: 8
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Text: 'C', X: 288.0762326359755, Y: 319.8372106580461, Width: 10.5, Height: 8
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Text: 'A', X: 288.0762326359755, Y: 302.3372071341752, Width: 10.5, Height: 8
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Text: 'G', X: 298.45591595337726, Y: 288.2477679130441, Width: 10.5, Height: 8
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Text: 'A', X: 298.45591595337726, Y: 268.2477679130441, Width: 10.5, Height: 8
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Text: 'C', X: 298.45591595337726, Y: 248.2477679130441, Width: 10.5, Height: 8
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Text: 'U', X: 273.2015212314935, Y: 201.2747627467127, Width: 10.5, Height: 8
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Text: 'G', X: 272.36099916158605, Y: 183.7950338297866, Width: 10.5, Height: 8
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Text: 'G', X: 263.84944388630083, Y: 165.69659669295717, Width: 10.5, Height: 8
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Text: 'A', X: 255.33788861101561, Y: 147.5981595561278, Width: 10.5, Height: 8
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Text: 'G', X: 246.8263333357304, Y: 129.4997224192984, Width: 10.5, Height: 8
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Text: 'A', X: 229.342275368185, Y: 128.75418194937066, Width: 10.5, Height: 8
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Text: 'G', X: 213.07491925014915, Y: 122.30272951338475, Width: 10.5, Height: 8
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Text: 'C', X: 199.83229221233694, Y: 110.86240859383918, Width: 10.5, Height: 8
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Text: 'C', X: 181.22999950237966, Y: 118.20779530476659, Width: 10.5, Height: 8
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Text: 'U', X: 162.62770679242232, Y: 125.55318201569406, Width: 10.5, Height: 8
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Text: 'U', X: 144.02541408246503, Y: 132.89856872662148, Width: 10.5, Height: 8
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Text: 'G', X: 125.4231213725077, Y: 140.24395543754886, Width: 10.5, Height: 8
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Text: 'A', X: 110.32280320609095, Y: 150.15307403796456, Width: 10.5, Height: 8
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Text: 'C', X: 96.18066758236, Y: 164.2952096616955, Width: 10.5, Height: 8
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Text: 'C', X: 82.03853195862905, Y: 178.43734528542646, Width: 10.5, Height: 8
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Text: 'C', X: 72.65982232426427, Y: 193.21213277139273, Width: 10.5, Height: 8
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Text: 'A', X: 65.88080720469279, Y: 212.0282150949961, Width: 10.5, Height: 8
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Text: 'G', X: 59.1017920851213, Y: 230.84429741859955, Width: 10.5, Height: 8
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Text: 'A', X: 65.64222623105323, Y: 247.07615591468564, Width: 10.5, Height: 8
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Text: 'G', X: 150.69145338716527, Y: 95.3244563620134, Width: 10.5, Height: 8
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Text: 'G', X: 187.8960388070799, Y: 80.63368294015856, Width: 10.5, Height: 8
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Text: 'G', X: 225.16176767759998, Y: 27.15147882226529, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 242.52553279490746, Y: 24.972107135064107, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 259.6407516200628, Y: 28.621666638216425, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 274.6051499247637, Y: 37.69452635157381, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 285.75550683360774, Y: 51.182281569007046, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 291.8525138223655, Y: 67.5858331898919, Width: 10.5, Height: 8
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Text: 'A', X: 292.21851789793334, Y: 85.08200537173411, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_9.svg


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Warning: Font Verdana not found. Using default font.
Text: 'MLLT6, -46.1 ± 1.5
 kcal/mol, AUC: 0.735', X: 110.60295797668863, Y: 386.7266498791772, Width: 142.5, Height: 23
Calculated bounding box: (1.070899143148008, 0.0, 379.0861816329895, 386.7266498791772)
Updated viewBox: -3.929100856851992 -5.0 388.0152824898415 396.7266498791772
Updated SVG: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_2.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_2.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CUGGCCUGAGGGGUCCUAGCCUGGAGCAGGCGCCUGCGCCCAGACCCUGGAGAGCCUUGACCCAGAGCCUGUGCUGAGGUCCAGGGAGUGUGGAGAGCUCCUGGUGUCGAGGA', '-structureDBN', '(((((((...))).)).))(((.((.((((.((((.(((((((...))))....(((((((((((........))).))).)))))...))).)).)).))))...)).))).', '-o', '/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_9.svg', '-title', 'MLLT6, -44.3 ± 1.2\n kcal/mol, AUC: 0.617', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,7,8,10,11,12,13,14,17,19,22,23,24,26,29,30,32,35,36,38,43,48,49,50,52,54,57,58,59,65,67,70,71,72,73,75,76,78,79,80,84,85,86,88,89,90,91,92,93,95,97,99,102,103,104,105,106,107,109,111,112', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '64,1,6,9,74,16,82,20,21,27,98,101,40,108,45,46,47,113,55,61,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '68,69,77,15,81,28,94,31,33,34,100,37,39,41,44,56,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '96,66,5,42,110,18,51,83,53,87,25,60']
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Text: 'C', X: 399.3525728726328, Y: 527.2340463909065, Width: 10.5, Height: 8
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Text: 'G', X: 399.3525728726328, Y: 474.882973530741, Width: 10.5, Height: 8
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Text: 'C', X: 338.414528070137, Y: 365.92489664272256, Width: 10.5, Height: 8
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Text: 'G', X: 334.19722469219295, Y: 348.94073482714845, Width: 10.5, Height: 8
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Text: 'C', X: 322.33468395068667, Y: 332.8385571124384, Width: 10.5, Height: 8
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Text: 'C', X: 309.1326309473876, Y: 321.35115809615655, Width: 10.5, Height: 8
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Text: 'U', X: 291.54526314379416, Y: 311.828317462127, Width: 10.5, Height: 8
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Text: 'G', X: 274.1411869793967, Y: 309.99923757784694, Width: 10.5, Height: 8
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Text: 'C', X: 263.0967753708814, Y: 296.4246888715025, Width: 10.5, Height: 8
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Text: 'G', X: 245.50937419265892, Y: 286.9019098760486, Width: 10.5, Height: 8
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Text: 'C', X: 227.9219730144365, Y: 277.3791308805946, Width: 10.5, Height: 8
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Text: 'C', X: 216.01413159258362, Y: 284.47290698768205, Width: 10.5, Height: 8
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Text: 'C', X: 216.01413159258362, Y: 304.4729069876821, Width: 10.5, Height: 8
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Text: 'A', X: 216.01413159258362, Y: 324.4729069876821, Width: 10.5, Height: 8
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Text: 'G', X: 216.01413159258362, Y: 344.4729069876821, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 215.07393045402654, Y: 361.94765487460353, Width: 10.5, Height: 8
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Text: 'C', X: 199.76413159258362, Y: 370.42473283310864, Width: 10.5, Height: 8
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Text: 'C', X: 184.45433273114082, Y: 361.94765487460353, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 183.51413159258362, Y: 344.4729069876821, Width: 10.5, Height: 8
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Text: 'U', X: 183.51413159258362, Y: 324.4729069876821, Width: 10.5, Height: 8
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Text: 'G', X: 183.51413159258362, Y: 304.4729069876821, Width: 10.5, Height: 8
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Text: 'G', X: 183.51413159258362, Y: 284.47290698768205, Width: 10.5, Height: 8
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Text: 'A', X: 168.34835854409124, Y: 274.36717123074624, Width: 10.5, Height: 8
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Text: 'G', X: 158.58807628972016, Y: 258.97680224028994, Width: 10.5, Height: 8
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Text: 'A', X: 155.91266785125998, Y: 240.94991240774237, Width: 10.5, Height: 8
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Text: 'G', X: 160.782471914704, Y: 223.3882616957206, Width: 10.5, Height: 8
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Text: 'C', X: 172.3595755949073, Y: 209.31355964824496, Width: 10.5, Height: 8
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Text: 'C', X: 166.55103175424, Y: 190.17561779309648, Width: 10.5, Height: 8
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Text: 'U', X: 160.7424879135728, Y: 171.037675937948, Width: 10.5, Height: 8
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Text: 'U', X: 154.9339440729055, Y: 151.8997340827994, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 149.1254002322383, Y: 132.7617922276508, Width: 10.5, Height: 8
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Text: 'A', X: 140.61941126413393, Y: 118.57280320609101, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 126.47727564040292, Y: 104.43066758235994, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 112.33514001667197, Y: 90.28853195862911, Width: 10.5, Height: 8
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Text: 'C', X: 97.5603525307057, Y: 80.90982232426421, Width: 10.5, Height: 8
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Text: 'A', X: 78.74427020710226, Y: 74.13080720469264, Width: 10.5, Height: 8
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Text: 'G', X: 59.92818788349882, Y: 67.35179208512113, Width: 10.5, Height: 8
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Text: 'A', X: 43.696329387412845, Y: 73.89222623105314, Width: 10.5, Height: 8
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Text: 'G', X: 26.517457945462695, Y: 70.55502904850823, Width: 10.5, Height: 8
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Text: 'C', X: 13.91485533642009, Y: 58.41316277792248, Width: 10.5, Height: 8
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Text: 'C', X: 9.94045975604132, Y: 41.37043151720923, Width: 10.5, Height: 8
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Text: 'U', X: 15.872102915501898, Y: 24.906345800624194, Width: 10.5, Height: 8
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Text: 'G', X: 29.802666719673937, Y: 14.314372370138017, Width: 10.5, Height: 8
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Text: 'U', X: 47.253252220649244, Y: 13.0, Width: 10.5, Height: 8
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Text: 'G', X: 62.61321722623683, Y: 21.38582041790528, Width: 10.5, Height: 8
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Text: 'C', X: 70.94408745280248, Y: 36.77565830926574, Width: 10.5, Height: 8
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Text: 'U', X: 89.76016977640592, Y: 43.554673428837305, Width: 10.5, Height: 8
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Text: 'G', X: 108.57625210000936, Y: 50.333688548408645, Width: 10.5, Height: 8
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Text: 'A', X: 125.93752178163265, Y: 52.532850898474635, Width: 10.5, Height: 8
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Text: 'G', X: 135.31611040523478, Y: 67.30756157006635, Width: 10.5, Height: 8
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Text: 'G', X: 149.45824602896573, Y: 81.44969719379714, Width: 10.5, Height: 8
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Text: 'U', X: 163.60038165269668, Y: 95.5918328175282, Width: 10.5, Height: 8
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Text: 'C', X: 178.65107327444207, Y: 105.41772441048391, Width: 10.5, Height: 8
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Text: 'C', X: 180.2245557468546, Y: 123.32290848656652, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_4.svg


Warning: Font Verdana not found. Using default font.
Text: 'A', X: 186.03309958752192, Y: 142.46085034171512, Width: 10.5, Height: 8
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Text: 'G', X: 191.84164342818912, Y: 161.5987921968637, Width: 10.5, Height: 8
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Text: 'G', X: 197.65018726885643, Y: 180.7367340520122, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 203.45873110952363, Y: 199.87467590716068, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 220.2543248372889, Y: 204.78975793413173, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 233.79900130776076, Y: 215.87090134581302, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 241.9437997006849, Y: 231.36000264765158, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 243.39648888204925, Y: 248.79960396598307, Width: 10.5, Height: 8
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Text: 'U', X: 260.9838900602717, Y: 258.3223829614371, Width: 10.5, Height: 8
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Text: 'G', X: 278.57129123849415, Y: 267.8451619568911, Width: 10.5, Height: 8
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Text: 'G', X: 295.97544447686056, Y: 269.67421910620595, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 307.0198791740922, Y: 283.2488447812877, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 324.60724697768563, Y: 292.7716854153172, Width: 10.5, Height: 8
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Text: 'A', X: 341.4427300104101, Y: 297.5483485869094, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 348.50072273709037, Y: 313.5619284074907, Width: 10.5, Height: 8
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Text: 'C', X: 360.3632634785967, Y: 329.66410612220074, Width: 10.5, Height: 8
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Text: 'U', X: 375.3342560924102, Y: 338.7260805294224, Width: 10.5, Height: 8
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Text: 'C', X: 379.5515476076552, Y: 355.71032182173343, Width: 10.5, Height: 8
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Text: 'C', X: 391.4140319157231, Y: 371.8125411110377, Width: 10.5, Height: 8
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Text: 'U', X: 403.2765162237911, Y: 387.914760400342, Width: 10.5, Height: 8
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Text: 'G', X: 431.8525819395709, Y: 409.20409801563295, Width: 10.5, Height: 8
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Text: 'U', X: 442.23225850578604, Y: 423.2935378334811, Width: 10.5, Height: 8
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Text: '60', X: 117.02795143895602, Y: 121.0860624457739, Width: 18.0, Height: 8
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Text: '70', X: -4.0, Y: 13.070899143147926, Width: 18.0, Height: 8
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Text: '113', X: 441.1025728726328, Y: 567.2340463909065, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'MLLT6, -44.3 ± 1.2
 kcal/mol, AUC: 0.617', X: 163.64651631433705, Y: 580.0340463909065, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 470.6025728726328, 580.0340463909065)
Updated viewBox: -9.0 0.0 484.6025728726328 585.0340463909065
Updated SVG: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_9.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_9.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CUGGCCUGAGGGGUCCUAGCCUGGAGCAGGCGCCUGCGCCCAGACCCUGGAGAGCCUUGACCCAGAGCCUGUGCUGAGGUCCAGGGAGUGUGGAGAGCUCCUGGUGUCGAGGA', '-structureDBN', '...(((((..((((....))))....)))))....((.((((..((((((...((((((...(((...)))...))))))))))))..)).))...))((((.......))))', '-o', '/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_4.svg', '-title', 'MLLT6, -45.6 ± 1.5\n kcal/mol, AUC: 0.706', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,7,8,10,11,12,13,14,17,19,22,23,24,26,29,30,32,35,36,38,43,48,49,50,52,54,57,58,59,65,67,70,71,72,73,75,76,78,79,80,84,85,86,88,89,90,91,92,93,95,97,99,102,103,104,105,106,107,109,111,112', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '64,1,6,9,74,16,82,20,21,27,98,101,40,108,45,46,47,113,55,61,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '68,69,77,15,81,28,94,31,33,34,100,37,39,41,44,56,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '96,66,5,42,110,18,51,83,53,87,25,60']
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Text: 'MLLT6, -45.6 ± 1.5
 kcal/mol, AUC: 0.706', X: 104.93534390200614, Y: 471.24699285554857, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 357.35393276063445, 471.24699285554857)
Updated viewBox: -9.0 0.0 371.35393276063445 476.24699285554857
Updated SVG: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_4.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_4.svg/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_5.svg


['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CUGGCCUGAGGGGUCCUAGCCUGGAGCAGGCGCCUGCGCCCAGACCCUGGAGAGCCUUGACCCAGAGCCUGUGCUGAGGUCCAGGGAGUGUGGAGAGCUCCUGGUGUCGAGGA', '-structureDBN', '(((((...(((.(.(((.((.....)))))).)))..))).))..(((.((..(((..(((((((........))).))).).((((((.......))))))))).)).))).', '-o', '/disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_5.svg', '-title', 'MLLT6, -44.3 ± 1.2\n kcal/mol, AUC: 0.701', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,7,8,10,11,12,13,14,17,19,22,23,24,26,29,30,32,35,36,38,43,48,49,50,52,54,57,58,59,65,67,70,71,72,73,75,76,78,79,80,84,85,86,88,89,90,91,92,93,95,97,99,102,103,104,105,106,107,109,111,112', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '64,1,6,9,74,16,82,20,21,27,98,101,40,108,45,46,47,113,55,61,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '68,69,77,15,81,28,94,31,33,34,100,37,39,41,44,56,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '96,66,5,42,110,18,51,83,53,87,25,60']
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 59.68758329610236, Y: 374.62584572546723, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 59.68758329610236, Y: 354.62584572546723, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 55.871980055424416, Y: 337.5467441223114, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 47.36048820985522, Y: 319.44827715511195, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 38.84899636428605, Y: 301.3498101879125, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 22.78553954350068, Y: 294.4061624109651, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 13.133218244014646, Y: 279.8088481711801, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 13.033776546991877, Y: 262.30916243593225, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 22.51958183364025, Y: 247.6030960840033, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 19.524459311952914, Y: 227.8286367720504, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 16.529336790265607, Y: 208.0541774600975, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 7.503892271584167, Y: 193.06122072703687, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 11.684517921828789, Y: 176.0679935605525, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 5.35418112231142, Y: 159.7529972126523, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 13.883240291078724, Y: 144.47204765043642, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 19.588457900469738, Y: 125.30304944944805, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 25.29367550986075, Y: 106.13405124845968, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 26.79886538723798, Y: 88.17295896074978, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 41.87800728081632, Y: 78.29946350635663, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 56.02014290454727, Y: 64.15732788262568, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 62.76585016450912, Y: 48.00968900257374, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 78.94585726605052, Y: 41.34199239641839, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 95.10972731914526, Y: 48.04871385659044, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 101.81644877931737, Y: 64.21258390968524, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 95.148752173162, Y: 80.39259101122661, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 79.00111329311008, Y: 87.13829827118849, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 64.85897766937913, Y: 101.28043389491944, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 56.4432975864668, Y: 115.40502986372013, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 50.738079977075785, Y: 134.5740280647085, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 45.03286236768477, Y: 153.7430262656968, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 43.81799724590121, Y: 171.20080684444946, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 52.84350634465906, Y: 186.19381139684788, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 48.662833172189096, Y: 203.18710336235563, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 51.6579556938764, Y: 222.96156267430854, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 54.65307821556371, Y: 242.73602198626145, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 68.06840309677855, Y: 253.97341751776514, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 73.15566702798952, Y: 270.7176626692851, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 68.25900518598513, Y: 287.5186359388626, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 76.77049703155433, Y: 305.61710290606203, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 85.2819888771235, Y: 323.7155698732615, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 96.00321778834592, Y: 337.54688400580756, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 92.18758329610236, Y: 354.62584572546723, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 92.18758329610236, Y: 374.62584572546723, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 109.68758329610236, Y: 374.62584572546723, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 127.18758329610236, Y: 374.62584572546723, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 144.68758329610236, Y: 374.62584572546723, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 144.68758329610236, Y: 354.62584572546723, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 144.68758329610236, Y: 334.62584572546723, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 138.0092061446131, Y: 318.4503092953845, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 144.68758329610236, Y: 302.2747728653017, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 144.68758329610236, Y: 282.2747728653017, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 135.890448268357, Y: 267.1466964075381, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 138.94714968387376, Y: 249.91576902493023, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 152.41106945258824, Y: 238.7367195809951, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 159.2904288763452, Y: 219.95709195106684, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 166.16978830010217, Y: 201.1774643211386, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 158.72001040205723, Y: 185.3423118012181, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 160.37685485119454, Y: 167.92088497874738, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 170.67804722752092, Y: 153.77391775303937, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 164.16576018868395, Y: 137.5306219918649, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 152.8547778834126, Y: 121.03632966725036, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 141.54379557814121, Y: 104.54203734263581, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 128.7379410146554, Y: 92.61456365538578, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 111.48281730275929, Y: 82.50216009900214, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 94.2276935908632, Y: 72.3897565426185, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 77.07213823533584, Y: 75.84481508013573, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 60.795759513949235, Y: 69.4159734448001, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 50.63167336915626, Y: 55.17020698962256, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 49.84779597293024, Y: 37.68775735343263, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 58.69615643870836, Y: 22.589511557251967, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 74.33186543264935, Y: 14.729796975218619, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 91.72779257100055, Y: 16.635637485704706, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 105.2908691988873, Y: 27.694274899071047, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 110.66034936998662, Y: 44.35018051078731, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 127.91547308188271, Y: 54.46258406717095, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 145.17059679377886, Y: 64.57498762355459, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 161.83483845141333, Y: 69.91849302506392, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 168.34702060563984, Y: 86.16169109656983, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 179.65800291091122, Y: 102.65598342118437, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 190.96898521618257, Y: 119.15027574579892, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 203.77478644230385, Y: 131.0776163947898, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 202.75511972585718, Y: 148.54788484685923, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 217.01406103978897, Y: 158.69345494448555, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 224.1150923195191, Y: 174.68799634973675, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 242.81822397639078, Y: 181.7726887372525, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 261.5213556332625, Y: 188.85738112476827, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 280.22448729013416, Y: 195.94207351228408, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 298.92761894700584, Y: 203.0267658997999, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 317.6307506038775, Y: 210.11145828731566, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 334.45892889850023, Y: 205.30910389463747, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 350.8756844622074, Y: 211.37048403367976, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 360.5453599374796, Y: 225.95635283301453, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 359.7361734669339, Y: 243.43764024797258, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 348.760411372665, Y: 257.0678581067779, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 331.8539086585556, Y: 261.58674717449117, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 315.54132897662276, Y: 255.2503494163734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 306.11812547416434, Y: 240.50404722973212, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 287.41499381729267, Y: 233.4193548422163, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 268.711862160421, Y: 226.33466245470055, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 250.0087305035493, Y: 219.2499700671848, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 231.3055988466776, Y: 212.16527767966897, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 212.60246718980594, Y: 205.08058529215322, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 196.68668319873564, Y: 212.3564233847436, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 189.80732377497867, Y: 231.13605101467192, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 182.92796435122168, Y: 249.91567864460018, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 185.98472745479322, Y: 267.1466449358052, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 177.18758329610236, Y: 282.2747728653017, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 177.18758329610236, Y: 302.2747728653017, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 183.86596044759162, Y: 318.4503092953845, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 177.18758329610236, Y: 334.62584572546723, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 177.18758329610236, Y: 354.62584572546723, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 177.18758329610236, Y: 374.62584572546723, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 194.68758329610236, Y: 374.62584572546723, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 60.43758329610236, Y: 394.62584572546723, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: -4.0, Y: 230.82375929373774, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: 43.49005010346838, Y: 46.18763199192006, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: 59.92851599062075, Y: 146.50841494417477, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 100.45479492181121, Y: 317.240431929161, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 120.93758329610236, Y: 302.2747728653017, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 140.44974316267164, Y: 136.36521900706225, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 41.26601928585744, Y: 8.0, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 204.85433713616618, Y: 109.71659339698459, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 331.4658104471888, Y: 185.32343076808868, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '100', X: 234.67403811603353, Y: 237.9531017240565, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '110', X: 188.93758329610236, Y: 334.62584572546723, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '113', X: 186.43758329610236, Y: 394.62584572546723, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'MLLT6, -44.3 ± 1.2
 kcal/mol, AUC: 0.701', X: 116.94977052989549, Y: 407.42584572546724, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 0.0, 371.0453599374796, 407.42584572546724)
Updated viewBox: -9.0 -5.0 385.0453599374796 417.42584572546724
Updated SVG: /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_5.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/66f8c418-17b5-4b6c-ad27-1fedab143973/final_image/MLLT6_fold_final_5.svg
