Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/6a1e347a-2e48-4fcb-a466-7493aca081ac/final_image/MLLT6_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 158.96 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 158.96 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 158.96 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.59 MB
Based on canonical annotations, the following gene is in your area of interest: MLLT6(+)
write fasta - Elapsed time since the previous call: 0.62 seconds
write fasta - Current memory usage: 172.59 MB
Length of region: 101 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.18 seconds
write dat - Current memory usage: 175.85 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/6a1e347a-2e48-4fcb-a466-7493aca081ac/fasta/MLLT6.fasta" "/disk1/www/rails/humanrnamap/public/result/6a1e347a-2e48-4fcb-a466-7493aca081ac/ct/MLLT6.ct" --SHAPE "MLLT6.dat"

fold - Elapsed time since the previous call: 0.13 seconds
fold - Current memory usage: 175.85 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/6a1e347a-2e48-4fcb-a466-7493aca081ac/ct/MLLT6.ct" "/disk1/www/rails/humanrnamap/public/result/6a1e347a-2e48-4fcb-a466-7493aca081ac/fold_FE/MLLT6.txt" -sh "MLLT6.dat"

efn2 - Elapsed time since the previous call: 0.41 seconds
efn2 - Current memory usage: 175.85 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/6a1e347a-2e48-4fcb-a466-7493aca081ac/ct/MLLT6.ct" 1 "/disk1/www/rails/humanrnamap/public/result/6a1e347a-2e48-4fcb-a466-7493aca081ac/fold_dbn/MLLT6_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 175.85 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGGUAGAGUGGGCAAUUCUCACCUUCAAAGAGUCCCCGCCUGCCCAGGCCUUUGGCACAGAGGCUGAGUGGACAGUCAGGAGAGAGGCGAGAGGCAAGGC', '-structureDBN', '.((((((.(((((..(((((.........))))).)))))))))))..((((((.((.......((((........)))).......)).)))))).....', '-o', '/disk1/www/rails/humanrnamap/public/result/6a1e347a-2e48-4fcb-a466-7493aca081ac/final_image/MLLT6_fold_1.svg', '-title', 'MLLT6, -42.2 ± 1.2\n kcal/mol, AUC: 0.728', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,5,7,9,10,11,12,13,17,18,20,25,26,31,33,34,39,42,43,48,49,52,53,54,55,56,61,63,64,66,67,69,70,71,72,76,77,80,81,83,85,87,88,90,92,94,95,99,100', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '96,36,37,38,101,40,41,74,44,45,46,50,51,86', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,97,35,98,6,73,75,15,79,82,84,22,89,93', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '1,68,8,14,78,16,19,21,23,24,27,28,29,30,91,32,47,57,58,59,60,62']
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Text: 'MLLT6, -42.2 ± 1.2
 kcal/mol, AUC: 0.728', X: 50.0, Y: 419.6031423959619, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 246.0, 419.6031423959619)
Updated viewBox: -0.25 0.0 251.25 424.6031423959619
Updated SVG: /disk1/www/rails/humanrnamap/public/result/6a1e347a-2e48-4fcb-a466-7493aca081ac/final_image/MLLT6_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/6a1e347a-2e48-4fcb-a466-7493aca081ac/final_image/MLLT6_fold_final_1.svg
