Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 97% [================================================= ] -                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/6fbfa7ad-a1a8-44f6-ac62-335af6a6ae90/final_image/TFRC_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 158.00 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 158.00 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 158.00 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 171.49 MB
Based on canonical annotations, the following gene is in your area of interest: TFRC(-)
write fasta - Elapsed time since the previous call: 0.58 seconds
write fasta - Current memory usage: 171.49 MB
Length of region: 108 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.19 seconds
write dat - Current memory usage: 175.12 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/6fbfa7ad-a1a8-44f6-ac62-335af6a6ae90/fasta/TFRC.fasta" "/disk1/www/rails/humanrnamap/public/result/6fbfa7ad-a1a8-44f6-ac62-335af6a6ae90/ct/TFRC.ct" --SHAPE "TFRC.dat"

fold - Elapsed time since the previous call: 0.14 seconds
fold - Current memory usage: 175.12 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/6fbfa7ad-a1a8-44f6-ac62-335af6a6ae90/ct/TFRC.ct" "/disk1/www/rails/humanrnamap/public/result/6fbfa7ad-a1a8-44f6-ac62-335af6a6ae90/fold_FE/TFRC.txt" -sh "TFRC.dat"

efn2 - Elapsed time since the previous call: 0.40 seconds
efn2 - Current memory usage: 175.12 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/6fbfa7ad-a1a8-44f6-ac62-335af6a6ae90/ct/TFRC.ct" 1 "/disk1/www/rails/humanrnamap/public/result/6fbfa7ad-a1a8-44f6-ac62-335af6a6ae90/fold_dbn/TFRC_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 175.12 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AAGAUCGUUAGUAUCUAACAUGUAUCCCAACUCCUAUAAUUCCCUAUCUUUUAGUUUUAGUUGCAGAAACAUUUUGUGGUCAUUAAGCAUUGGGUGGGUAAAUUCAAC', '-structureDBN', '......(((((...))))).......................(((((((....((.(((((((((((.....))))))...)))))))...)))))))..........', '-o', '/disk1/www/rails/humanrnamap/public/result/6fbfa7ad-a1a8-44f6-ac62-335af6a6ae90/final_image/TFRC_fold_1.svg', '-title', 'TFRC, -10.5 ± 0.9\n kcal/mol, AUC: 0.499', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,5,7,8,9,11,12,14,16,21,22,23,25,32,35,37,40,41,45,47,49,50,51,52,54,55,56,57,58,60,61,62,63,66,72,73,74,75,76,77,78,79,80,83,84,87,90,91,92,93,94,95,96,97,98,99,103,104', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,2,4,100,59,42,43,108,82,53,85,27', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '33,34,71,10,48,17,18,88,89,26,29', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,65,67,68,69,6,70,13,15,81,19,20,86,24,28,30,31,36,101,38,39,102,105,106,107,44,46']
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Text: 'TFRC, -10.5 ± 0.9
 kcal/mol, AUC: 0.499', X: 321.25, Y: 507.36228599376335, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 788.5, 507.36228599376335)
Updated viewBox: -0.25 -5.0 793.75 517.3622859937634
Updated SVG: /disk1/www/rails/humanrnamap/public/result/6fbfa7ad-a1a8-44f6-ac62-335af6a6ae90/final_image/TFRC_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/6fbfa7ad-a1a8-44f6-ac62-335af6a6ae90/final_image/TFRC_fold_final_1.svg
