Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
  0% [=                                                 ] /                     
  6% [====                                              ] -                     
 12% [=======                                           ] \                     
 18% [==========                                        ] |                     
 25% [=============                                     ] /                     
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 37% [===================                               ] \                     
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 87% [============================================      ] \                     
 93% [===============================================   ] |                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/707d327d-dbd8-4834-8392-3eef14aa5614/final_image/CLASP1_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 156.21 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 156.21 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 156.21 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 169.74 MB
Based on canonical annotations, the following gene is in your area of interest: CLASP1(-)
write fasta - Elapsed time since the previous call: 1.50 seconds
write fasta - Current memory usage: 169.74 MB
Length of region: 80 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.20 seconds
write dat - Current memory usage: 173.27 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/707d327d-dbd8-4834-8392-3eef14aa5614/fasta/CLASP1.fasta" "/disk1/www/rails/humanrnamap/public/result/707d327d-dbd8-4834-8392-3eef14aa5614/ct/CLASP1.ct" --SHAPE "CLASP1.dat"

fold - Elapsed time since the previous call: 0.09 seconds
fold - Current memory usage: 173.27 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/707d327d-dbd8-4834-8392-3eef14aa5614/ct/CLASP1.ct" "/disk1/www/rails/humanrnamap/public/result/707d327d-dbd8-4834-8392-3eef14aa5614/fold_FE/CLASP1.txt" -sh "CLASP1.dat"

efn2 - Elapsed time since the previous call: 0.40 seconds
efn2 - Current memory usage: 173.27 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/707d327d-dbd8-4834-8392-3eef14aa5614/ct/CLASP1.ct" 1 "/disk1/www/rails/humanrnamap/public/result/707d327d-dbd8-4834-8392-3eef14aa5614/fold_dbn/CLASP1_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.27 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CACACCAGCAGCAGGACCAGCCCCCUGACCUCACCCACCAACUGUUCCCAUGGGGGUCUGUCUCCAAGCAUGCUGGACUA', '-structureDBN', '....((((((((.(((.((((((((..........................))))).)))..)))..)).))))))....', '-o', '/disk1/www/rails/humanrnamap/public/result/707d327d-dbd8-4834-8392-3eef14aa5614/final_image/CLASP1_fold_1.svg', '-title', 'CLASP1, -37.1 ± 1.3\n kcal/mol, AUC: 0.937', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '68,71,8,72,74,11,75,76,14,15,79,20,26,27,31,43,44,45,46,51,52,53,54,55,56,57,59,60,61,63', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '64,65,69,6,7,9,73,12,16,80,18,19,21,22,23,24,25,37,39,40,62', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '32,33,66,5,10,48,58,28', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '1,2,3,4,67,70,13,77,78,17,29,30,34,35,36,38,41,42,47,49,50']
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Text: '30', X: 118.97305069453395, Y: 190.06386073067213, Width: 18.0, Height: 8
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Text: '40', X: -4.0, Y: 61.15281760649168, Width: 18.0, Height: 8
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Text: 'CLASP1, -37.1 ± 1.3
 kcal/mol, AUC: 0.937', X: 189.64523571629388, Y: 372.3338807909915, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 510.6261820029542, 372.3338807909915)
Updated viewBox: -9.0 0.0 524.6261820029542 377.3338807909915
Updated SVG: /disk1/www/rails/humanrnamap/public/result/707d327d-dbd8-4834-8392-3eef14aa5614/final_image/CLASP1_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/707d327d-dbd8-4834-8392-3eef14aa5614/final_image/CLASP1_fold_final_1.svg
