Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 95% [================================================  ] -                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_6.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 159.19 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 159.19 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 159.19 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.75 MB
Based on canonical annotations, the following gene is in your area of interest: KPNB1(+)
write fasta - Elapsed time since the previous call: 1.75 seconds
write fasta - Current memory usage: 172.75 MB
Length of region: 110 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.17 seconds
write dat - Current memory usage: 176.37 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/fasta/KPNB1.fasta" "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/ct/KPNB1.ct" --SHAPE "KPNB1.dat"

fold - Elapsed time since the previous call: 0.17 seconds
fold - Current memory usage: 176.37 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/ct/KPNB1.ct" "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/fold_FE/KPNB1.txt" -sh "KPNB1.dat"

efn2 - Elapsed time since the previous call: 0.71 seconds
efn2 - Current memory usage: 176.37 MB
This region has 13 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/ct/KPNB1.ct" 1 "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/fold_dbn/KPNB1_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.37 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/ct/KPNB1.ct" 2 "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/fold_dbn/KPNB1_temp2.dbn"

ct2dot - Elapsed time since the previous call: 0.03 seconds
ct2dot - Current memory usage: 176.37 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/ct/KPNB1.ct" 3 "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/fold_dbn/KPNB1_temp3.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.37 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/ct/KPNB1.ct" 4 "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/fold_dbn/KPNB1_temp4.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.37 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/ct/KPNB1.ct" 5 "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/fold_dbn/KPNB1_temp5.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.37 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/ct/KPNB1.ct" 6 "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/fold_dbn/KPNB1_temp6.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.37 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/ct/KPNB1.ct" 7 "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/fold_dbn/KPNB1_temp7.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.37 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/ct/KPNB1.ct" 8 "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/fold_dbn/KPNB1_temp8.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.37 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/ct/KPNB1.ct" 9 "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/fold_dbn/KPNB1_temp9.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.37 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/ct/KPNB1.ct" 10 "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/fold_dbn/KPNB1_temp10.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.37 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/ct/KPNB1.ct" 11 "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/fold_dbn/KPNB1_temp11.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.37 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/ct/KPNB1.ct" 12 "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/fold_dbn/KPNB1_temp12.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.37 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/ct/KPNB1.ct" 13 "/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/fold_dbn/KPNB1_temp13.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.37 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGACCGUGUCUCCCGAUCGGCUGGAGCUGGAAGCGGCGCAGAAGUUCCUGGAGCGUGCGGCCGUGGAGAACCUGCCCACUUUCCUUGUGGAACUGUCCAGAGUGCUGGCA', '-structureDBN', '((((...)))).(((.....(((((((((....)))).....((((((.((((.(((.(((...((....)).)))))).))))....)))))).))))).....)))..', '-o', '/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_6.svg', '-title', 'KPNB1, -33.0 ± 1.2\n kcal/mol, AUC: 0.701', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,7,8,9,11,15,17,19,20,22,23,24,26,28,29,30,33,35,36,38,41,44,45,46,49,50,51,53,55,56,57,59,60,63,64,65,66,68,73,74,80,81,82,85,86,87,88,89,90,94,95,96,100,102,103,104,106,107,108', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '3,10,12,76,77,47,52,61', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,70,72,13,78,16,83,84,25,91,31,97,34,98,99,37,105,109,110,48,58', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,4,5,69,71,75,14,79,18,21,27,92,93,32,101,39,40,42,43,54,62']
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Text: 'G', X: 533.2392626555484, Y: 37.65842001184524, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'C', X: 339.7139536829046, Y: 166.42910431706377, Width: 10.5, Height: 8
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Text: 'C', X: 325.57181805917367, Y: 180.57123994079473, Width: 10.5, Height: 8
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Text: 'U', X: 324.65410950425627, Y: 197.56117203287351, Width: 10.5, Height: 8
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Text: 'U', X: 314.8230274864171, Y: 211.44820943628457, Width: 10.5, Height: 8
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Text: 'G', X: 269.669638127797, Y: 203.726681034592, Width: 10.5, Height: 8
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Text: 'G', X: 249.669638127797, Y: 203.726681034592, Width: 10.5, Height: 8
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Text: 'A', X: 229.669638127797, Y: 203.726681034592, Width: 10.5, Height: 8
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Text: 'A', X: 209.669638127797, Y: 203.726681034592, Width: 10.5, Height: 8
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Text: 'C', X: 189.669638127797, Y: 203.726681034592, Width: 10.5, Height: 8
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Text: 'U', X: 169.669638127797, Y: 203.726681034592, Width: 10.5, Height: 8
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Text: 'G', X: 160.93865033987714, Y: 216.61655893210894, Width: 10.5, Height: 8
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Text: 'U', X: 148.0487724423602, Y: 225.3475467200288, Width: 10.5, Height: 8
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Text: 'C', X: 148.0487724423602, Y: 245.3475467200288, Width: 10.5, Height: 8
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Text: 'C', X: 148.0487724423602, Y: 265.3475467200288, Width: 10.5, Height: 8
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Text: 'A', X: 148.0487724423602, Y: 285.3475467200288, Width: 10.5, Height: 8
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Text: 'G', X: 148.0487724423602, Y: 305.3475467200288, Width: 10.5, Height: 8
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Text: 'A', X: 162.7322723801965, Y: 314.86835817366693, Width: 10.5, Height: 8
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Text: 'G', X: 172.57489199327466, Y: 329.3381149204963, Width: 10.5, Height: 8
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Text: 'U', X: 176.03632889987972, Y: 346.4923993911981, Width: 10.5, Height: 8
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Text: 'G', X: 172.57489199327466, Y: 363.6466838618998, Width: 10.5, Height: 8
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Text: 'C', X: 162.7322723801965, Y: 378.11644060872925, Width: 10.5, Height: 8
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Text: 'U', X: 148.0487724423602, Y: 387.6372520623674, Width: 10.5, Height: 8
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Text: 'G', X: 148.0487724423602, Y: 407.6372520623674, Width: 10.5, Height: 8
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Text: 'G', X: 148.0487724423602, Y: 427.6372520623674, Width: 10.5, Height: 8
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Text: 'C', X: 165.5487724423602, Y: 427.6372520623674, Width: 10.5, Height: 8
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Text: 'A', X: 183.0487724423602, Y: 427.6372520623674, Width: 10.5, Height: 8
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Text: '1', X: 48.79877244236019, Y: 447.6372520623674, Width: 9.0, Height: 8
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Text: '10', X: 96.79877244236019, Y: 407.6372520623674, Width: 18.0, Height: 8
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Text: '20', X: 83.13009682352029, Y: 300.57098564681905, Width: 18.0, Height: 8
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Text: '30', X: 20.823015667696275, Y: 253.67432787074017, Width: 18.0, Height: 8
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Text: '40', X: 120.82648570765713, Y: 126.69424966475697, Width: 18.0, Height: 8
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Text: '50', X: 287.72944301021874, Y: 140.96087730618103, Width: 18.0, Height: 8
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Text: '60', X: 431.20442906884324, Y: 21.43508610165742, Width: 18.0, Height: 8
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Text: '70', X: 534.6444297365712, Y: 97.07224476210507, Width: 18.0, Height: 8
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Text: '80', X: 394.5505178242784, Y: 145.57146296543056, Width: 18.0, Height: 8
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Text: '90', X: 245.919638127797, Y: 223.726681034592, Width: 18.0, Height: 8
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Text: '100', X: 158.2338411107984, Y: 297.5920168741725, Width: 27.0, Height: 8
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Text: '110', X: 174.7987724423602, Y: 447.6372520623674, Width: 27.0, Height: 8
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Text: 'KPNB1, -33.0 ± 1.2
 kcal/mol, AUC: 0.701', X: 216.64187286285278, Y: 460.4372520623674, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 571.0337457257056, 460.4372520623674)
Updated viewBox: -0.25 0.0 576.2837457257056 465.4372520623674
Updated SVG: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_6.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_6.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGACCGUGUCUCCCGAUCGGCUGGAGCUGGAAGCGGCGCAGAAGUUCCUGGAGCGUGCGGCCGUGGAGAACCUGCCCACUUUCCUUGUGGAACUGUCCAGAGUGCUGGCA', '-structureDBN', '((((...)))).(((......))).((((....))))......(((((.((((.(((.(((...((....)).)))))).))))....))))).(.((((....))))).', '-o', '/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_1.svg', '-title', 'KPNB1, -34.4 ± 1.2\n kcal/mol, AUC: 0.763', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,7,8,9,11,15,17,19,20,22,23,24,26,28,29,30,33,35,36,38,41,44,45,46,49,50,51,53,55,56,57,59,60,63,64,65,66,68,73,74,80,81,82,85,86,87,88,89,90,94,95,96,100,102,103,104,106,107,108', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '3,10,12,76,77,47,52,61', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,70,72,13,78,16,83,84,25,91,31,97,34,98,99,37,105,109,110,48,58', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,4,5,69,71,75,14,79,18,21,27,92,93,32,101,39,40,42,43,54,62']Output file: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_1.svg


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Text: 'C', X: 139.75, Y: 363.8641075979084, Width: 10.5, Height: 8
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Text: 'G', X: 172.25, Y: 343.86410759790846, Width: 10.5, Height: 8
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Text: 'G', X: 172.25, Y: 363.8641075979084, Width: 10.5, Height: 8
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Text: 'G', X: 242.25, Y: 383.86410759790846, Width: 10.5, Height: 8
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Text: 'A', X: 259.75, Y: 383.86410759790846, Width: 10.5, Height: 8
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Text: 'U', X: 294.75, Y: 343.86410759790846, Width: 10.5, Height: 8
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Text: 'G', X: 170.5534185955835, Y: 150.61656229176486, Width: 10.5, Height: 8
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Text: 'C', X: 142.45484257645182, Y: 103.24699939167408, Width: 10.5, Height: 8
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Text: 'U', X: 141.51306189040065, Y: 70.00931044604863, Width: 10.5, Height: 8
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Text: 'G', X: 155.47917545430641, Y: 59.46427099978098, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: '110', X: 404.0, Y: 403.86410759790846, Width: 27.0, Height: 8
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Text: 'KPNB1, -34.4 ± 1.2
 kcal/mol, AUC: 0.763', X: 153.67737708556504, Y: 416.66410759790847, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 445.1047541711301, 416.66410759790847)
Updated viewBox: -0.25 0.0 450.3547541711301 421.66410759790847
Updated SVG: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_1.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGACCGUGUCUCCCGAUCGGCUGGAGCUGGAAGCGGCGCAGAAGUUCCUGGAGCGUGCGGCCGUGGAGAACCUGCCCACUUUCCUUGUGGAACUGUCCAGAGUGCUGGCA', '-structureDBN', '...(((.(((....))))))(((..((((....)))).)))..(((((.((((.(((.(((...((....)).)))))).))))....))))).(.((((....))))).', '-o', '/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_12.svg', '-title', 'KPNB1, -33.8 ± 1.6\n kcal/mol, AUC: 0.583', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,7,8,9,11,15,17,19,20,22,23,24,26,28,29,30,33,35,36,38,41,44,45,46,49,50,51,53,55,56,57,59,60,63,64,65,66,68,73,74,80,81,82,85,86,87,88,89,90,94,95,96,100,102,103,104,106,107,108', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '3,10,12,76,77,47,52,61', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,70,72,13,78,16,83,84,25,91,31,97,34,98,99,37,105,109,110,48,58', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,4,5,69,71,75,14,79,18,21,27,92,93,32,101,39,40,42,43,54,62']Output file: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_12.svg


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Text: 'C', X: 54.495650701968145, Y: 112.98430312834432, Width: 10.5, Height: 8
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Text: 'G', X: 34.023318965408066, Y: 86.78288044607359, Width: 10.5, Height: 8
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Text: 'U', X: 39.01306189040068, Y: 70.00931044604863, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: '110', X: 301.5, Y: 403.86410759790846, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'KPNB1, -33.8 ± 1.6
 kcal/mol, AUC: 0.583', X: 102.42737708556504, Y: 416.66410759790847, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 342.6047541711301, 416.66410759790847)
Updated viewBox: -0.25 0.0 347.8547541711301 421.66410759790847
Updated SVG: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_12.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_12.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGACCGUGUCUCCCGAUCGGCUGGAGCUGGAAGCGGCGCAGAAGUUCCUGGAGCGUGCGGCCGUGGAGAACCUGCCCACUUUCCUUGUGGAACUGUCCAGAGUGCUGGCA', '-structureDBN', '...(((.(((....)))))).(((.((.((..((((((((...((((...)))).))).)))))......)).)))))..((((....)))).((.((((....))))))', '-o', '/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_11.svg', '-title', 'KPNB1, -33.8 ± 1.3\n kcal/mol, AUC: 0.628', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,7,8,9,11,15,17,19,20,22,23,24,26,28,29,30,33,35,36,38,41,44,45,46,49,50,51,53,55,56,57,59,60,63,64,65,66,68,73,74,80,81,82,85,86,87,88,89,90,94,95,96,100,102,103,104,106,107,108', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '3,10,12,76,77,47,52,61', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,70,72,13,78,16,83,84,25,91,31,97,34,98,99,37,105,109,110,48,58', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,4,5,69,71,75,14,79,18,21,27,92,93,32,101,39,40,42,43,54,62']Output file: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_11.svg


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Text: 'G', X: 89.75, Y: 451.04926322754045, Width: 10.5, Height: 8
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Text: 'G', X: 124.75, Y: 411.04926322754045, Width: 10.5, Height: 8
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Text: 'G', X: 134.44962743323416, Y: 212.27260519804656, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 125.3735486214286, Y: 194.45057407356774, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 113.74046514020358, Y: 178.4354829380236, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 99.59832951647262, Y: 164.29334731429265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 85.45619389274167, Y: 150.1512116905617, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 68.15390976081297, Y: 147.5280172979824, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 55.779538580532204, Y: 135.15364366147503, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 53.1563476223356, Y: 117.85135900886087, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 61.306801050942624, Y: 102.36522669923102, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 58.30887139530674, Y: 82.5911927713787, Width: 10.5, Height: 8
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Text: 'U', X: 55.31094173967085, Y: 62.81715884352616, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Text: 'C', X: 50.623187298928585, Y: 25.624879192063986, Width: 10.5, Height: 8
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Text: 'U', X: 64.48932723441999, Y: 14.948692832610504, Width: 10.5, Height: 8
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Text: 'G', X: 80.89683551040535, Y: 21.03510918921006, Width: 10.5, Height: 8
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Text: 'G', X: 84.44581721679518, Y: 38.17148922526553, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 87.44374687243106, Y: 57.94552315311785, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 90.44167652806695, Y: 77.71955708097039, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 93.43960618370282, Y: 97.4935910088227, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 105.8139723982413, Y: 109.86796213581295, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 108.43716428130443, Y: 127.17024130199889, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 122.57929990503538, Y: 141.31237692572984, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 136.72143552876636, Y: 155.4545125494608, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 150.77265460375682, Y: 163.7685252633172, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 154.33434919870678, Y: 179.70194600438367, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 163.41042801051233, Y: 197.5239771288625, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 172.4865068223179, Y: 215.34600825334144, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 181.56258563412345, Y: 233.1680393778203, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'C', X: 157.25, Y: 431.04926322754045, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'C', X: 209.75, Y: 411.04926322754045, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 209.75, Y: 391.04926322754045, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 206.2012656127609, Y: 373.9128185599493, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'G', X: 234.75001787993298, Y: 360.34163161341553, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'G', X: 242.25, Y: 411.04926322754045, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'C', X: 259.75, Y: 451.0492632275405, Width: 10.5, Height: 8
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Text: 'U', X: 277.25, Y: 451.0492632275405, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 277.25, Y: 431.04926322754045, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'C', X: 292.66734010780453, Y: 382.0405146025266, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'G', X: 309.6905761383001, Y: 345.8436993413736, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'G', X: 349.6047541711301, Y: 345.67823414659483, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 339.10048853798696, Y: 359.67507861615127, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 330.58887052273917, Y: 377.77348624672777, Width: 10.5, Height: 8
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Text: 'G', X: 322.0772525074914, Y: 395.8718938773043, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 313.5656344922436, Y: 413.9703015078808, Width: 10.5, Height: 8
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Text: 'C', X: 309.75, Y: 431.0492632275405, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 309.75, Y: 451.0492632275405, Width: 10.5, Height: 8
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Text: '1', X: 5.5, Y: 471.04926322754045, Width: 9.0, Height: 8
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Warning: Font Verdana not found. Using default font.
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Text: '40', X: 69.97726583581078, Y: 166.35097238741582, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 92.31541911024654, Y: 8.0, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 167.6387932010588, Y: 169.25465258596, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 213.8501241650353, Y: 342.6939187962271, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 188.5, Y: 471.04926322754045, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 258.5, Y: 411.04926322754045, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '100', X: 284.48886977387224, Y: 335.23051643829433, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '110', X: 301.5, Y: 471.0492632275405, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'KPNB1, -33.8 ± 1.3
 kcal/mol, AUC: 0.628', X: 111.17737708556504, Y: 483.8492632275405, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 360.1047541711301, 483.8492632275405)
Updated viewBox: -0.25 -5.0 365.3547541711301 493.8492632275405
Updated SVG: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_11.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_11.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGACCGUGUCUCCCGAUCGGCUGGAGCUGGAAGCGGCGCAGAAGUUCCUGGAGCGUGCGGCCGUGGAGAACCUGCCCACUUUCCUUGUGGAACUGUCCAGAGUGCUGGCA', '-structureDBN', '.....((((((((...((.....))...)))...)))))....(((((.((((.(((.(((...((....)).)))))).))))....))))).(.((((....))))).', '-o', '/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_3.svg', '-title', 'KPNB1, -33.4 ± 1.2\n kcal/mol, AUC: 0.747', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,7,8,9,11,15,17,19,20,22,23,24,26,28,29,30,33,35,36,38,41,44,45,46,49,50,51,53,55,56,57,59,60,63,64,65,66,68,73,74,80,81,82,85,86,87,88,89,90,94,95,96,100,102,103,104,106,107,108', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '3,10,12,76,77,47,52,61', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,70,72,13,78,16,83,84,25,91,31,97,34,98,99,37,105,109,110,48,58', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,4,5,69,71,75,14,79,18,21,27,92,93,32,101,39,40,42,43,54,62']Output file: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_3.svg


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Text: 'KPNB1, -33.4 ± 1.2
 kcal/mol, AUC: 0.747', X: 152.7908265943266, Y: 416.66410759790847, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 429.0393976080033, 416.66410759790847)
Updated viewBox: -9.0 0.0 443.0393976080033 421.66410759790847/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_8.svg


Updated SVG: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_3.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_3.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGACCGUGUCUCCCGAUCGGCUGGAGCUGGAAGCGGCGCAGAAGUUCCUGGAGCGUGCGGCCGUGGAGAACCUGCCCACUUUCCUUGUGGAACUGUCCAGAGUGCUGGCA', '-structureDBN', '((((...)))).(((.(((((....)))))...))).......(((((.((((.(((.(((...((....)).)))))).))))....))))).(.((((....))))).', '-o', '/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_8.svg', '-title', 'KPNB1, -33.4 ± 1.4\n kcal/mol, AUC: 0.669', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,7,8,9,11,15,17,19,20,22,23,24,26,28,29,30,33,35,36,38,41,44,45,46,49,50,51,53,55,56,57,59,60,63,64,65,66,68,73,74,80,81,82,85,86,87,88,89,90,94,95,96,100,102,103,104,106,107,108', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '3,10,12,76,77,47,52,61', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,70,72,13,78,16,83,84,25,91,31,97,34,98,99,37,105,109,110,48,58', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,4,5,69,71,75,14,79,18,21,27,92,93,32,101,39,40,42,43,54,62']
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Text: 'C', X: 280.6007811815746, Y: 383.86410759790846, Width: 10.5, Height: 8
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Text: 'U', X: 298.1007811815746, Y: 383.86410759790846, Width: 10.5, Height: 8
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Text: 'G', X: 315.6007811815746, Y: 383.86410759790846, Width: 10.5, Height: 8
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Text: 'C', X: 322.5065032741314, Y: 352.9537666034711, Width: 10.5, Height: 8
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Text: 'C', X: 331.0181212893791, Y: 334.8553589728946, Width: 10.5, Height: 8
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Text: 'A', X: 339.5297393046269, Y: 316.7569513423181, Width: 10.5, Height: 8
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Text: 'G', X: 348.0413573198747, Y: 298.65854371174163, Width: 10.5, Height: 8
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Text: 'A', X: 352.12297880172815, Y: 281.64115208800973, Width: 10.5, Height: 8
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Text: 'G', X: 367.89682552404406, Y: 274.062431142001, Width: 10.5, Height: 8
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Text: 'U', X: 383.73296456063, Y: 281.51011212405876, Width: 10.5, Height: 8
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Text: 'G', X: 387.95553535270466, Y: 298.4930785169627, Width: 10.5, Height: 8
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Text: 'G', X: 351.91641567381816, Y: 366.7851458782487, Width: 10.5, Height: 8
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Text: 'C', X: 348.1007811815746, Y: 383.86410759790846, Width: 10.5, Height: 8
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Text: 'A', X: 365.6007811815746, Y: 383.86410759790846, Width: 10.5, Height: 8
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Text: '1', X: 8.850781181574575, Y: 403.8641075979084, Width: 9.0, Height: 8
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Text: '10', X: 56.850781181574575, Y: 363.8641075979084, Width: 18.0, Height: 8
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Text: '20', X: 9.781430282173346, Y: 275.83047719757917, Width: 18.0, Height: 8
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Text: '30', X: 101.66191696373474, Y: 278.7395176805336, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_7.svg


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Text: '60', X: 94.55918624864015, Y: 138.57931665686237, Width: 18.0, Height: 8
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Text: '70', X: 170.19634490908783, Y: 35.139315989134616, Width: 18.0, Height: 8
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Text: '80', X: 218.6955631124132, Y: 175.23322790142714, Width: 18.0, Height: 8
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Text: '90', X: 296.8507811815746, Y: 323.86410759790846, Width: 18.0, Height: 8
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Text: '100', X: 322.8396509554468, Y: 288.04536080866234, Width: 27.0, Height: 8
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Text: '110', X: 357.3507811815746, Y: 403.86410759790846, Width: 27.0, Height: 8
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Text: 'KPNB1, -33.4 ± 1.4
 kcal/mol, AUC: 0.669', X: 130.35276767635233, Y: 416.66410759790847, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 398.45553535270466, 416.66410759790847)
Updated viewBox: -0.25 0.0 403.70553535270466 421.66410759790847
Updated SVG: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_8.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_8.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGACCGUGUCUCCCGAUCGGCUGGAGCUGGAAGCGGCGCAGAAGUUCCUGGAGCGUGCGGCCGUGGAGAACCUGCCCACUUUCCUUGUGGAACUGUCCAGAGUGCUGGCA', '-structureDBN', '((((...)))).(((.((.....))..)))..(((((((.((((((((.((((.(((.(((...((....)).)))))).))))....)))))).))....))))).)).', '-o', '/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_7.svg', '-title', 'KPNB1, -32.9 ± 1.6\n kcal/mol, AUC: 0.689', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,7,8,9,11,15,17,19,20,22,23,24,26,28,29,30,33,35,36,38,41,44,45,46,49,50,51,53,55,56,57,59,60,63,64,65,66,68,73,74,80,81,82,85,86,87,88,89,90,94,95,96,100,102,103,104,106,107,108', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '3,10,12,76,77,47,52,61', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,70,72,13,78,16,83,84,25,91,31,97,34,98,99,37,105,109,110,48,58', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,4,5,69,71,75,14,79,18,21,27,92,93,32,101,39,40,42,43,54,62']
Warning: Font Verdana not found. Using default font.
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Text: 'G', X: 301.0947230300861, Y: 168.73013549397734, Width: 10.5, Height: 8
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Text: 'A', X: 301.0947230300861, Y: 148.73013549397734, Width: 10.5, Height: 8
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Text: 'G', X: 333.5947230300861, Y: 128.73013549397731, Width: 10.5, Height: 8
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Text: 'U', X: 333.5947230300861, Y: 148.73013549397734, Width: 10.5, Height: 8
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Text: 'C', X: 333.5947230300861, Y: 168.73013549397734, Width: 10.5, Height: 8
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Text: 'U', X: 333.5947230300861, Y: 188.73013549397734, Width: 10.5, Height: 8
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Text: 'C', X: 351.0947230300861, Y: 188.73013549397734, Width: 10.5, Height: 8
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Text: 'C', X: 368.5947230300861, Y: 188.73013549397734, Width: 10.5, Height: 8
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Text: 'C', X: 368.5947230300861, Y: 168.73013549397734, Width: 10.5, Height: 8
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Text: 'G', X: 368.5947230300861, Y: 148.73013549397734, Width: 10.5, Height: 8
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Text: 'U', X: 362.85426313944214, Y: 116.37117684385188, Width: 10.5, Height: 8
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Text: 'C', X: 355.97478793972425, Y: 97.59159162541678, Width: 10.5, Height: 8
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Text: 'G', X: 344.16403346903445, Y: 84.67815340506868, Width: 10.5, Height: 8
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Text: 'G', X: 344.92265420057055, Y: 67.19458104632716, Width: 10.5, Height: 8
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Text: 'C', X: 357.80755407746085, Y: 55.352699312405946, Width: 10.5, Height: 8
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Text: 'U', X: 375.2929061728892, Y: 56.06912791077815, Width: 10.5, Height: 8
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Text: 'G', X: 387.16584621302036, Y: 68.92541441354078, Width: 10.5, Height: 8
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Text: 'G', X: 386.4916139196813, Y: 86.41244442587521, Width: 10.5, Height: 8
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Text: 'A', X: 393.3710891193992, Y: 105.19202964431031, Width: 10.5, Height: 8
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Text: 'G', X: 406.83510408520544, Y: 116.37104127327584, Width: 10.5, Height: 8
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Text: 'C', X: 409.8918671887769, Y: 133.60200756448083, Width: 10.5, Height: 8
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Text: 'U', X: 401.0947230300861, Y: 148.73013549397734, Width: 10.5, Height: 8
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Text: 'G', X: 401.0947230300861, Y: 168.73013549397734, Width: 10.5, Height: 8
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Text: 'G', X: 401.0947230300861, Y: 188.73013549397734, Width: 10.5, Height: 8
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Text: 'A', X: 418.5947230300861, Y: 188.73013549397734, Width: 10.5, Height: 8
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Text: 'A', X: 436.0947230300861, Y: 188.73013549397734, Width: 10.5, Height: 8
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Text: 'G', X: 453.5947230300861, Y: 188.73013549397734, Width: 10.5, Height: 8
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Text: 'C', X: 453.5947230300861, Y: 168.73013549397734, Width: 10.5, Height: 8
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Text: 'G', X: 449.7791197894081, Y: 151.6510338908215, Width: 10.5, Height: 8
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Text: 'G', X: 441.267627943839, Y: 133.55256692362207, Width: 10.5, Height: 8
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Text: 'C', X: 432.7561360982698, Y: 115.45409995642265, Width: 10.5, Height: 8
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Text: 'G', X: 424.2446442527006, Y: 97.35563298922321, Width: 10.5, Height: 8
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Text: 'C', X: 415.73315240713146, Y: 79.25716602202377, Width: 10.5, Height: 8
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Text: 'A', X: 399.6697209639534, Y: 72.31353950274448, Width: 10.5, Height: 8
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Text: 'G', X: 390.01739353396806, Y: 57.716267355070045, Width: 10.5, Height: 8
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Text: 'A', X: 370.707007582994, Y: 52.50963750223599, Width: 10.5, Height: 8
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Text: 'A', X: 353.2234837133778, Y: 51.74744804957106, Width: 10.5, Height: 8
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Text: 'G', X: 333.5332552237343, Y: 55.25385675729899, Width: 10.5, Height: 8
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Text: 'U', X: 313.8430267340907, Y: 58.76026546502692, Width: 10.5, Height: 8
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Text: 'U', X: 294.1527982444472, Y: 62.26667417275476, Width: 10.5, Height: 8
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Text: 'C', X: 274.46256975480367, Y: 65.77308288048269, Width: 10.5, Height: 8
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Text: 'C', X: 254.7723412651601, Y: 69.27949158821056, Width: 10.5, Height: 8
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Text: 'U', X: 243.88631878127484, Y: 82.98139997533912, Width: 10.5, Height: 8
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Text: 'G', X: 227.2795660238104, Y: 88.50077872854743, Width: 10.5, Height: 8
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Text: 'G', X: 217.2253628276015, Y: 105.78987928610513, Width: 10.5, Height: 8
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Text: 'A', X: 207.17115963139258, Y: 123.07897984366284, Width: 10.5, Height: 8
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Text: 'G', X: 197.11695643518368, Y: 140.36808040122057, Width: 10.5, Height: 8
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Text: 'C', X: 194.75852683622008, Y: 157.70835750932807, Width: 10.5, Height: 8
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Text: 'G', X: 180.8538210639996, Y: 168.33410725921402, Width: 10.5, Height: 8
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Text: 'U', X: 170.79967846103108, Y: 185.62324305367102, Width: 10.5, Height: 8
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Text: 'G', X: 160.74553585806257, Y: 202.91237884812801, Width: 10.5, Height: 8
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Text: 'C', X: 155.45822250204048, Y: 219.594602539907, Width: 10.5, Height: 8
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Text: 'G', X: 139.23698869398999, Y: 226.16147725866617, Width: 10.5, Height: 8
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Text: 'G', X: 122.78086414895824, Y: 237.52791755272497, Width: 10.5, Height: 8
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Text: 'C', X: 106.3247396039265, Y: 248.89435784678378, Width: 10.5, Height: 8
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Text: 'C', X: 100.75923859590529, Y: 265.2715511409154, Width: 10.5, Height: 8
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Text: 'G', X: 86.64038134275222, Y: 275.2638047169973, Width: 10.5, Height: 8
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Text: 'U', X: 69.3444799894001, Y: 275.06617364973533, Width: 10.5, Height: 8
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Text: 'G', X: 55.45763161412492, Y: 264.7539137681308, Width: 10.5, Height: 8
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Text: 'G', X: 35.45763161412492, Y: 264.7539137681308, Width: 10.5, Height: 8
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Text: 'A', X: 18.32118694653377, Y: 268.30264815536987, Width: 10.5, Height: 8
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Text: 'G', X: 4.75, Y: 257.25393164806377, Width: 10.5, Height: 8
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Text: 'A', X: 4.75, Y: 239.7538958881978, Width: 10.5, Height: 8
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Text: 'A', X: 18.32118694653377, Y: 228.70517938089168, Width: 10.5, Height: 8
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Text: 'C', X: 35.45763161412492, Y: 232.25391376813076, Width: 10.5, Height: 8
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Text: 'C', X: 55.45763161412492, Y: 232.25391376813076, Width: 10.5, Height: 8
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Text: 'U', X: 69.9537638516307, Y: 221.74402281926422, Width: 10.5, Height: 8
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Text: 'G', X: 87.85427412608095, Y: 222.1531554611072, Width: 10.5, Height: 8
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Text: 'C', X: 104.3103986711127, Y: 210.78671516704838, Width: 10.5, Height: 8
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Text: 'C', X: 120.76652321614438, Y: 199.42027487298958, Width: 10.5, Height: 8
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Text: 'C', X: 132.65069019207, Y: 186.57439711830423, Width: 10.5, Height: 8
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Text: 'A', X: 142.70483279503844, Y: 169.28526132384724, Width: 10.5, Height: 8
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Text: 'C', X: 152.75897539800695, Y: 151.99612552939024, Width: 10.5, Height: 8
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Text: 'U', X: 155.1173846205428, Y: 134.6557706904875, Width: 10.5, Height: 8
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Text: 'U', X: 169.0221680291524, Y: 124.03000020738108, Width: 10.5, Height: 8
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Text: 'U', X: 179.0763712253613, Y: 106.74089964982338, Width: 10.5, Height: 8
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Text: 'C', X: 189.1305744215702, Y: 89.45179909226565, Width: 10.5, Height: 8
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Text: 'C', X: 199.1847776177791, Y: 72.16269853470791, Width: 10.5, Height: 8
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Text: 'U', X: 195.76878167483306, Y: 54.9993372171287, Width: 10.5, Height: 8
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Text: 'U', X: 202.29389787220822, Y: 38.761330608842286, Width: 10.5, Height: 8
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Text: 'G', X: 216.63625166266263, Y: 28.734023505265668, Width: 10.5, Height: 8
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Text: 'U', X: 234.12751849201595, Y: 28.181226341411787, Width: 10.5, Height: 8
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Text: 'G', X: 249.0744271151023, Y: 37.282870292539826, Width: 10.5, Height: 8
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Text: 'G', X: 268.7646556047458, Y: 33.776461584811955, Width: 10.5, Height: 8
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Text: 'A', X: 288.4548840943894, Y: 30.270052877084026, Width: 10.5, Height: 8
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Text: 'A', X: 308.1451125840329, Y: 26.763644169356155, Width: 10.5, Height: 8
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Text: 'C', X: 327.83534107367643, Y: 23.257235461628227, Width: 10.5, Height: 8
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Text: 'U', X: 347.52556956332, Y: 19.750826753900355, Width: 10.5, Height: 8
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Text: 'G', X: 363.6710437941632, Y: 13.0, Width: 10.5, Height: 8
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Text: 'U', X: 379.1677810938493, Y: 21.130260331903116, Width: 10.5, Height: 8
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Text: 'C', X: 398.4781670448234, Y: 26.33689018473717, Width: 10.5, Height: 8
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Text: 'C', X: 414.160432285062, Y: 18.5705167109204, Width: 10.5, Height: 8
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Text: 'A', X: 431.5372342584091, Y: 20.643377820372734, Width: 10.5, Height: 8
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Text: 'G', X: 444.952559139624, Y: 31.88077335187637, Width: 10.5, Height: 8
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Text: 'A', X: 450.0398230708349, Y: 48.62501850339635, Width: 10.5, Height: 8
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Text: 'G', X: 445.14316122883054, Y: 65.42599177297384, Width: 10.5, Height: 8
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Text: 'U', X: 453.6546530743997, Y: 83.52445874017329, Width: 10.5, Height: 8
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Text: 'G', X: 462.1661449199689, Y: 101.62292570737273, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_4.svg


Warning: Font Verdana not found. Using default font.
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Text: 'U', X: 479.1891286111072, Y: 137.81985964177161, Width: 10.5, Height: 8
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Text: 'G', X: 489.9103575223296, Y: 151.65117377431764, Width: 10.5, Height: 8
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Text: 'G', X: 486.0947230300861, Y: 168.73013549397734, Width: 10.5, Height: 8
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Text: 'C', X: 486.0947230300861, Y: 188.73013549397734, Width: 10.5, Height: 8
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Text: 'A', X: 503.594723030086, Y: 188.73013549397734, Width: 10.5, Height: 8
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Text: '1', X: 301.8447230300861, Y: 208.73013549397734, Width: 9.0, Height: 8
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Text: '10', X: 349.8447230300861, Y: 168.73013549397734, Width: 18.0, Height: 8
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Text: '20', X: 323.0391245642532, Y: 58.758047224383404, Width: 18.0, Height: 8
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Text: '30', X: 411.486858653817, Y: 202.8722711177083, Width: 18.0, Height: 8
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Text: '40', X: 383.07698321366354, Y: 87.64533936698999, Width: 18.0, Height: 8
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Text: '50', X: 238.24908040854285, Y: 102.04093737893461, Width: 18.0, Height: 8
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Text: '60', X: 130.39730444301705, Y: 253.9840420977567, Width: 18.0, Height: 8
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Text: '70', X: 9.825903140896301, Y: 209.27627612816136, Width: 18.0, Height: 8
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Text: '80', X: 134.0782664445089, Y: 124.60159779088335, Width: 18.0, Height: 8
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Text: '90', X: 261.5082468970179, Y: 14.086233095168438, Width: 18.0, Height: 8
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Text: '100', X: 453.3852282795704, Y: 20.849520006626847, Width: 27.0, Height: 8
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Text: '110', X: 495.344723030086, Y: 208.73013549397734, Width: 27.0, Height: 8
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Text: 'KPNB1, -32.9 ± 1.6
 kcal/mol, AUC: 0.689', X: 188.172361515043, Y: 293.0638047169973, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 522.344723030086, 293.0638047169973)
Updated viewBox: -0.25 0.0 527.594723030086 298.0638047169973
Updated SVG: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_7.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_7.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGACCGUGUCUCCCGAUCGGCUGGAGCUGGAAGCGGCGCAGAAGUUCCUGGAGCGUGCGGCCGUGGAGAACCUGCCCACUUUCCUUGUGGAACUGUCCAGAGUGCUGGCA', '-structureDBN', '((((...)))).(((.((.....))..)))..(((((((..........((((.(((.(((...((....)).)))))).)))).(.((((....)))).))))))).).', '-o', '/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_4.svg', '-title', 'KPNB1, -30.5 ± 1.1\n kcal/mol, AUC: 0.724', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,7,8,9,11,15,17,19,20,22,23,24,26,28,29,30,33,35,36,38,41,44,45,46,49,50,51,53,55,56,57,59,60,63,64,65,66,68,73,74,80,81,82,85,86,87,88,89,90,94,95,96,100,102,103,104,106,107,108', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '3,10,12,76,77,47,52,61', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,70,72,13,78,16,83,84,25,91,31,97,34,98,99,37,105,109,110,48,58', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,4,5,69,71,75,14,79,18,21,27,92,93,32,101,39,40,42,43,54,62']
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Text: 'U', X: 37.25, Y: 373.09785299769584, Width: 10.5, Height: 8
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Text: 'C', X: 37.25, Y: 393.09785299769584, Width: 10.5, Height: 8
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Text: 'C', X: 72.25, Y: 393.09785299769584, Width: 10.5, Height: 8
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Text: 'G', X: 72.25, Y: 373.09785299769584, Width: 10.5, Height: 8
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Text: 'A', X: 63.45286953776704, Y: 357.9698022757916, Width: 10.5, Height: 8
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Text: 'U', X: 66.50954010935607, Y: 340.7388943475704, Width: 10.5, Height: 8
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Text: 'C', X: 59.63006490963818, Y: 321.9593091291353, Width: 10.5, Height: 8
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Text: 'G', X: 47.81931043894839, Y: 309.0458709087872, Width: 10.5, Height: 8
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Text: 'G', X: 104.75, Y: 393.09785299769584, Width: 10.5, Height: 8
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Text: 'G', X: 104.75, Y: 413.09785299769584, Width: 10.5, Height: 8
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Text: 'A', X: 122.25, Y: 413.09785299769584, Width: 10.5, Height: 8
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Text: 'G', X: 144.9229049137529, Y: 377.92028442734056, Width: 10.5, Height: 8
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Text: 'G', X: 136.41141306818372, Y: 359.8218174601411, Width: 10.5, Height: 8
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Text: 'C', X: 110.87693753147619, Y: 305.5264165585428, Width: 10.5, Height: 8
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Text: 'A', X: 93.38077872479042, Y: 305.161629364696, Width: 10.5, Height: 8
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Text: 'G', X: 76.88783333456237, Y: 299.31086915421764, Width: 10.5, Height: 8
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Text: 'A', X: 63.07311008171317, Y: 288.56833387930465, Width: 10.5, Height: 8
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Text: 'G', X: 48.67588717202244, Y: 257.1579501482396, Width: 10.5, Height: 8
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Text: 'U', X: 49.55555654322282, Y: 239.68011205301366, Width: 10.5, Height: 8
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Text: 'U', X: 55.889289534624794, Y: 223.36654502801298, Width: 10.5, Height: 8
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Text: 'C', X: 67.03383791217615, Y: 209.8740402884926, Width: 10.5, Height: 8
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Text: 'C', X: 81.85737135197442, Y: 200.57288449769197, Width: 10.5, Height: 8
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Text: 'U', X: 98.85442511142493, Y: 196.4076946840206, Width: 10.5, Height: 8
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Text: 'G', X: 116.2987936763862, Y: 197.8014837840475, Width: 10.5, Height: 8
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Text: 'G', X: 126.58448110030304, Y: 180.64908936759713, Width: 10.5, Height: 8
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Text: 'A', X: 136.8701685242199, Y: 163.49669495114676, Width: 10.5, Height: 8
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Text: 'G', X: 147.15585594813678, Y: 146.34430053469634, Width: 10.5, Height: 8
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Text: 'C', X: 149.7471529184406, Y: 129.0372909613784, Width: 10.5, Height: 8
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Text: 'G', X: 163.79342920347577, Y: 118.59940214784513, Width: 10.5, Height: 8
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Text: 'U', X: 174.07905651326536, Y: 101.44697168321102, Width: 10.5, Height: 8
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Text: 'G', X: 184.36468382305495, Y: 84.2945412185768, Width: 10.5, Height: 8
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Text: 'C', X: 189.87575468270552, Y: 67.68489438888082, Width: 10.5, Height: 8
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Text: 'G', X: 206.18379209745305, Y: 61.336651678766884, Width: 10.5, Height: 8
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Text: 'G', X: 222.79121269429444, Y: 50.19243429397011, Width: 10.5, Height: 8
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Text: 'C', X: 239.3986332911358, Y: 39.04821690917311, Width: 10.5, Height: 8
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Text: 'C', X: 245.12653519654646, Y: 22.822128143233385, Width: 10.5, Height: 8
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Text: 'G', X: 259.25525118973076, Y: 13.0, Width: 10.5, Height: 8
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Text: 'U', X: 276.46032419981367, Y: 13.283336541732297, Width: 10.5, Height: 8
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Text: 'G', X: 290.25796102947595, Y: 23.565361380980107, Width: 10.5, Height: 8
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Text: 'G', X: 310.25796102947595, Y: 23.565361380980107, Width: 10.5, Height: 8
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Text: 'A', X: 327.3944056970671, Y: 20.016626993741056, Width: 10.5, Height: 8
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Text: 'G', X: 340.9655926436009, Y: 31.06534350104721, Width: 10.5, Height: 8
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Text: 'A', X: 340.9655926436009, Y: 48.565379260913005, Width: 10.5, Height: 8
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Text: 'A', X: 327.39440569706716, Y: 59.61409576821916, Width: 10.5, Height: 8
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Text: 'C', X: 310.25796102947595, Y: 56.06536138098011, Width: 10.5, Height: 8
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Text: 'C', X: 290.25796102947595, Y: 56.06536138098011, Width: 10.5, Height: 8
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Text: 'U', X: 275.581788903088, Y: 66.63072276196021, Width: 10.5, Height: 8
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Text: 'G', X: 257.50798654143074, Y: 66.03527537904029, Width: 10.5, Height: 8
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Text: 'C', X: 240.9005659445894, Y: 77.17949276383729, Width: 10.5, Height: 8
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Text: 'C', X: 224.293145347748, Y: 88.32371014863406, Width: 10.5, Height: 8
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Text: 'C', X: 212.23738332808549, Y: 101.00868559698483, Width: 10.5, Height: 8
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Text: 'A', X: 201.9517560182959, Y: 118.16111606161905, Width: 10.5, Height: 8
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Text: 'C', X: 191.66612870850633, Y: 135.31354652625322, Width: 10.5, Height: 8
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Text: 'U', X: 189.07485106796597, Y: 152.6206340972351, Width: 10.5, Height: 8
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Text: 'U', X: 175.02849687486867, Y: 163.0585425985613, Width: 10.5, Height: 8
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Text: 'U', X: 164.7428094509518, Y: 180.2109370150116, Width: 10.5, Height: 8
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Text: 'C', X: 154.45712202703493, Y: 197.36333143146203, Width: 10.5, Height: 8
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Text: 'C', X: 144.17143460311806, Y: 214.51572584791245, Width: 10.5, Height: 8
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Text: 'U', X: 153.61764247461755, Y: 229.24729592202272, Width: 10.5, Height: 8
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Text: 'U', X: 157.94943931373604, Y: 246.2026943586447, Width: 10.5, Height: 8
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Text: 'G', X: 175.16273440075446, Y: 243.04835249282672, Width: 10.5, Height: 8
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Text: 'U', X: 189.58763734240205, Y: 252.95640858286134, Width: 10.5, Height: 8
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Text: 'G', X: 209.14696738187448, Y: 257.131646109876, Width: 10.5, Height: 8
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Text: 'G', X: 228.7062974213469, Y: 261.30688363689063, Width: 10.5, Height: 8
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Text: 'A', X: 248.26562746081936, Y: 265.4821211639053, Width: 10.5, Height: 8
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Text: 'A', X: 265.7653367579984, Y: 265.5890141515704, Width: 10.5, Height: 8
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Text: 'C', X: 276.7309521943976, Y: 279.2274352367837, Width: 10.5, Height: 8
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Text: 'U', X: 273.0776118929631, Y: 296.3418839932731, Width: 10.5, Height: 8
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Text: 'G', X: 257.4988948778988, Y: 304.3140121759565, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_5.svg


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Text: 'C', X: 221.9215364399481, Y: 293.09079495103333, Width: 10.5, Height: 8
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Text: 'C', X: 202.36220640047569, Y: 288.9155574240187, Width: 10.5, Height: 8
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Text: 'A', X: 182.80287636100323, Y: 284.74031989700404, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 165.58951374250097, Y: 287.8947053147913, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 151.16456693918002, Y: 277.98658189401374, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 140.2869463531753, Y: 291.69524230949287, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 148.79843819874446, Y: 309.7937092766923, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 157.30993004431363, Y: 327.89217624389175, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 165.8214218898828, Y: 345.9906432110912, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 174.33291373545197, Y: 364.08911017829064, Width: 10.5, Height: 8
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Text: 'G', X: 182.84440558102114, Y: 382.1875771454901, Width: 10.5, Height: 8
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Text: 'G', X: 193.56563449224356, Y: 396.01889127803616, Width: 10.5, Height: 8
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Text: 'C', X: 189.75, Y: 413.09785299769584, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 207.25, Y: 413.09785299769584, Width: 10.5, Height: 8
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Text: '1', X: 5.5, Y: 433.09785299769584, Width: 9.0, Height: 8
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Text: '10', X: 53.5, Y: 393.09785299769584, Width: 18.0, Height: 8
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Text: '20', X: 26.694401534167113, Y: 283.12576472810196, Width: 18.0, Height: 8
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Text: '30', X: 115.14213562373095, Y: 427.2399886214268, Width: 18.0, Height: 8
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Text: '40', X: 86.03306324198348, Y: 324.83537947251153, Width: 18.0, Height: 8
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Text: '50', X: 102.00213178181144, Y: 180.80831095253882, Width: 18.0, Height: 8
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Text: '60', X: 207.8969953094975, Y: 33.58501369712877, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 328.3896895027047, Y: 79.04299902094948, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 202.47726350853458, Y: 162.90629146410413, Width: 18.0, Height: 8
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Text: '90', X: 229.13153494836155, Y: 241.7475535974182, Width: 18.0, Height: 8
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Text: '100', X: 153.1642419406623, Y: 307.454028037748, Width: 27.0, Height: 8
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Text: '110', X: 199.0, Y: 433.09785299769584, Width: 27.0, Height: 8
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Text: 'KPNB1, -30.5 ± 1.1
 kcal/mol, AUC: 0.724', X: 106.85779632180046, Y: 445.89785299769585, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 351.4655926436009, 445.89785299769585)
Updated viewBox: -0.25 0.0 356.7155926436009 450.89785299769585
Updated SVG: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_4.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_4.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGACCGUGUCUCCCGAUCGGCUGGAGCUGGAAGCGGCGCAGAAGUUCCUGGAGCGUGCGGCCGUGGAGAACCUGCCCACUUUCCUUGUGGAACUGUCCAGAGUGCUGGCA', '-structureDBN', '((((...))))........(((((..(((((.((.((((....((((...)))))))).)).((((.........)))).((((....))))...)))))....))))).', '-o', '/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_5.svg', '-title', 'KPNB1, -31.3 ± 1.6\n kcal/mol, AUC: 0.713', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,7,8,9,11,15,17,19,20,22,23,24,26,28,29,30,33,35,36,38,41,44,45,46,49,50,51,53,55,56,57,59,60,63,64,65,66,68,73,74,80,81,82,85,86,87,88,89,90,94,95,96,100,102,103,104,106,107,108', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '3,10,12,76,77,47,52,61', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,70,72,13,78,16,83,84,25,91,31,97,34,98,99,37,105,109,110,48,58', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,4,5,69,71,75,14,79,18,21,27,92,93,32,101,39,40,42,43,54,62']
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Text: 'C', X: 109.07802203370039, Y: 307.11851900088584, Width: 10.5, Height: 8
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Text: 'U', X: 140.63782089514325, Y: 344.5932668878073, Width: 10.5, Height: 8
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Text: 'C', X: 140.63782089514325, Y: 364.5932668878073, Width: 10.5, Height: 8
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Text: 'U', X: 140.63782089514325, Y: 384.5932668878073, Width: 10.5, Height: 8
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Text: 'C', X: 158.13782089514325, Y: 384.5932668878073, Width: 10.5, Height: 8
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Text: 'C', X: 175.63782089514325, Y: 384.5932668878073, Width: 10.5, Height: 8
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Text: 'G', X: 210.63782089514325, Y: 384.5932668878073, Width: 10.5, Height: 8
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Text: 'C', X: 298.13782089514325, Y: 364.5932668878073, Width: 10.5, Height: 8
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Text: 'G', X: 298.13782089514325, Y: 324.5932668878073, Width: 10.5, Height: 8
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Text: 'G', X: 298.13782089514325, Y: 304.5932668878073, Width: 10.5, Height: 8
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Text: 'A', X: 285.62803098361803, Y: 292.35580200398863, Width: 10.5, Height: 8
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Text: 'G', X: 281.03672855658436, Y: 275.46881493001047, Width: 10.5, Height: 8
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Text: 'C', X: 285.62804561632123, Y: 258.5818318344377, Width: 10.5, Height: 8
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Text: 'U', X: 275.50126476442614, Y: 241.33514201935455, Width: 10.5, Height: 8
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Text: 'G', X: 265.3744839125311, Y: 224.08845220427142, Width: 10.5, Height: 8
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Text: 'G', X: 255.247703060636, Y: 206.84176238918835, Width: 10.5, Height: 8
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Text: 'A', X: 245.12092220874092, Y: 189.59507257410527, Width: 10.5, Height: 8
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Text: 'A', X: 225.1181370617598, Y: 189.36212458154247, Width: 10.5, Height: 8
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Text: 'G', X: 163.84595738916826, Y: 210.99513718698304, Width: 10.5, Height: 8
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Text: 'C', X: 147.40957422958525, Y: 222.3901057534766, Width: 10.5, Height: 8
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Text: 'G', X: 130.97319107000223, Y: 233.7850743199701, Width: 10.5, Height: 8
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Text: 'C', X: 114.53680791041921, Y: 245.1800428864636, Width: 10.5, Height: 8
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Text: 'A', X: 108.45362632532806, Y: 262.2770889609378, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 93.17251467796399, Y: 272.06492373123706, Width: 10.5, Height: 8
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Text: 'A', X: 75.09829521559703, Y: 270.44114003379434, Width: 10.5, Height: 8
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Text: 'A', X: 61.80647458892153, Y: 258.08631963452626, Width: 10.5, Height: 8
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Text: 'G', X: 58.86809700080727, Y: 240.1787787698639, Width: 10.5, Height: 8
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Text: 'U', X: 44.72596137707632, Y: 226.03664314613295, Width: 10.5, Height: 8
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Text: 'U', X: 30.583825753345366, Y: 211.894507522402, Width: 10.5, Height: 8
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Text: 'C', X: 16.441690129614415, Y: 197.75237189867104, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 4.75, Y: 184.7310365675506, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 9.581463284422398, Y: 167.91117466491627, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 26.40132518705667, Y: 163.07971138049385, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 39.422660518177196, Y: 174.77140151010823, Width: 10.5, Height: 8
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Text: 'A', X: 53.56479614190815, Y: 188.91353713383918, Width: 10.5, Height: 8
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Text: 'G', X: 67.7069317656391, Y: 203.05567275757014, Width: 10.5, Height: 8
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Text: 'C', X: 81.84906738937005, Y: 217.1978083813011, Width: 10.5, Height: 8
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Text: 'G', X: 96.01998398986723, Y: 218.4709202521412, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 112.45636714945022, Y: 207.0759516856477, Width: 10.5, Height: 8
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Text: 'G', X: 128.89275030903323, Y: 195.6809831191542, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 145.32913346861625, Y: 184.2860145526607, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 154.81753733117992, Y: 169.58158691535058, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 171.91594402934237, Y: 165.85405577742117, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 188.35236712481554, Y: 154.45914481565427, Width: 10.5, Height: 8
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Text: 'C', X: 186.78643226812954, Y: 137.02934711101602, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 191.43405396480242, Y: 120.1577848666767, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 177.29191834107147, Y: 106.01564924294576, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 163.1497827173405, Y: 91.8735136192148, Width: 10.5, Height: 8
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Text: 'G', X: 149.00764709360956, Y: 77.73137799548385, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 131.51006579312156, Y: 78.02142062172959, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 116.24309710174379, Y: 69.46752425406657, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 107.35392429704396, Y: 54.393305105453464, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 107.25723948668855, Y: 36.893587160878724, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 115.9793065372516, Y: 21.722067050563055, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 131.15082664756716, Y: 13.0, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 148.65054459214198, Y: 13.096684810355555, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 163.7247637407551, Y: 21.985857615055238, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 172.27866010841814, Y: 37.25282630643301, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 171.98861748217234, Y: 54.750407606921044, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 186.1307531059033, Y: 68.892543230652, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 200.27288872963425, Y: 83.03467885438295, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 214.4150243533652, Y: 97.1768144781139, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 228.75262520515193, Y: 92.82339664486335, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 243.73556895553588, Y: 92.997871826047, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 253.3635982285383, Y: 75.46786748154648, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 262.99162750154085, Y: 57.93786313704595, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 272.6196567745433, Y: 40.407858792545426, Width: 10.5, Height: 8
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Text: 'U', X: 277.75869985799204, Y: 23.67939539081476, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_10.svg


Text: 'U', X: 293.97609153623443, Y: 17.103115382248916, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 309.3148766812027, Y: 25.527658210977847, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 312.4658898403834, Y: 42.74167481568861, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 301.10591383435667, Y: 56.05340636117444, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 291.47788456135413, Y: 73.58341070567496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 281.8498552883517, Y: 91.11341505017549, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 272.2218260153492, Y: 108.64341939467602, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 281.3979129040989, Y: 123.54474247050109, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 284.7638159761517, Y: 140.7179977387823, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 281.89177800398, Y: 157.98071472905946, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 273.146793158251, Y: 173.13905368977575, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 283.2735740101461, Y: 190.38574350485888, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 293.4003548620411, Y: 207.632433319942, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 303.5271357139362, Y: 224.87912313502508, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 313.6539165658313, Y: 242.12581295010816, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 330.6378360370713, Y: 246.3444003196474, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 343.14761373320647, Y: 258.58186173912804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 347.7389132337041, Y: 275.468838049194, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 343.14760495358973, Y: 292.35581197221984, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 330.63782089514325, Y: 304.5932668878073, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 330.63782089514325, Y: 324.5932668878073, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 330.63782089514325, Y: 344.5932668878073, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 330.63782089514325, Y: 364.5932668878073, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 330.63782089514325, Y: 384.5932668878073, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 348.13782089514325, Y: 384.5932668878074, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 108.88782089514325, Y: 404.5932668878073, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: 156.88782089514325, Y: 364.5932668878073, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: 280.2456852714123, Y: 398.73540251153827, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: 234.25101324555288, Y: 216.9685432410834, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 120.36171978286018, Y: 274.71992261228866, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 27.132263772389237, Y: 143.58814424507665, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 149.364108074466, Y: 159.03562745955213, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 84.16978812551463, Y: 31.788396189501384, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 222.18062190010178, Y: 73.02349014644051, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 305.2578889058546, Y: 83.2114399786775, Width: 18.0, Height: 8
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Text: '100', X: 319.38958861777854, Y: 227.8289259723293, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '110', X: 339.88782089514325, Y: 404.5932668878074, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'KPNB1, -31.3 ± 1.6
 kcal/mol, AUC: 0.713', X: 110.44391044757162, Y: 417.3932668878074, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 366.88782089514325, 417.3932668878074)
Updated viewBox: -0.25 0.0 372.13782089514325 422.3932668878074
Updated SVG: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_5.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_5.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGACCGUGUCUCCCGAUCGGCUGGAGCUGGAAGCGGCGCAGAAGUUCCUGGAGCGUGCGGCCGUGGAGAACCUGCCCACUUUCCUUGUGGAACUGUCCAGAGUGCUGGCA', '-structureDBN', '...(((.(.((((.........))))))))..(((((((.((((((((.((((.(((.(((...((....)).)))))).))))....)))))).))....))))).)).', '-o', '/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_10.svg', '-title', 'KPNB1, -32.1 ± 1.4\n kcal/mol, AUC: 0.667', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,7,8,9,11,15,17,19,20,22,23,24,26,28,29,30,33,35,36,38,41,44,45,46,49,50,51,53,55,56,57,59,60,63,64,65,66,68,73,74,80,81,82,85,86,87,88,89,90,94,95,96,100,102,103,104,106,107,108', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '3,10,12,76,77,47,52,61', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,70,72,13,78,16,83,84,25,91,31,97,34,98,99,37,105,109,110,48,58', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,4,5,69,71,75,14,79,18,21,27,92,93,32,101,39,40,42,43,54,62']
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 316.09472303008613, Y: 192.96727723756817, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 333.59472303008613, Y: 192.96727723756817, Width: 10.5, Height: 8
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Text: 'A', X: 351.09472303008613, Y: 192.96727723756817, Width: 10.5, Height: 8
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Text: 'C', X: 368.59472303008613, Y: 192.96727723756817, Width: 10.5, Height: 8
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Text: 'C', X: 368.59472303008613, Y: 172.96727723756817, Width: 10.5, Height: 8
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Text: 'G', X: 368.59472303008613, Y: 152.96727723756817, Width: 10.5, Height: 8
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Text: 'U', X: 364.77910416350346, Y: 135.88824557613316, Width: 10.5, Height: 8
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Text: 'G', X: 375.5004451226429, Y: 122.05693624313079, Width: 10.5, Height: 8
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Text: 'U', X: 378.7433918895771, Y: 105.7536903881383, Width: 10.5, Height: 8
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Text: 'C', X: 392.98241323114195, Y: 97.17681447811384, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 407.1245488548729, Y: 83.03467885438289, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 421.26668447860385, Y: 68.89254323065194, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 435.4088201023348, Y: 54.75040760692099, Width: 10.5, Height: 8
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Text: 'C', X: 435.118777476089, Y: 37.25282630643295, Width: 10.5, Height: 8
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Text: 'G', X: 443.6726738437521, Y: 21.985857615055238, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 458.74689299236513, Y: 13.096684810355384, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 476.24661093694, Y: 13.0, Width: 10.5, Height: 8
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Text: 'C', X: 491.41813104725554, Y: 21.722067050563055, Width: 10.5, Height: 8
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Text: 'G', X: 500.1401980978186, Y: 36.89358716087855, Width: 10.5, Height: 8
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Text: 'G', X: 500.04351328746316, Y: 54.39330510545341, Width: 10.5, Height: 8
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Text: 'C', X: 491.15434048276336, Y: 69.46752425406652, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 475.88737179138565, Y: 78.02142062172953, Width: 10.5, Height: 8
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Text: 'G', X: 458.3897904908976, Y: 77.7313779954838, Width: 10.5, Height: 8
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Text: 'G', X: 444.24765486716666, Y: 91.87351361921475, Width: 10.5, Height: 8
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Text: 'A', X: 430.1055192434357, Y: 106.0156492429457, Width: 10.5, Height: 8
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Text: 'G', X: 415.9633836197047, Y: 120.15778486667665, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 404.9103575223297, Y: 135.88831551790844, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 401.09472303008613, Y: 152.96727723756817, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 401.09472303008613, Y: 172.96727723756817, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 401.09472303008613, Y: 192.96727723756817, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 418.59472303008613, Y: 192.96727723756817, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 436.09472303008613, Y: 192.96727723756817, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 453.59472303008613, Y: 192.96727723756817, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 453.59472303008613, Y: 172.96727723756817, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 449.7791197894082, Y: 155.88817563441233, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 441.267627943839, Y: 137.7897086672129, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 432.75613609826985, Y: 119.69124170001345, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 424.24464425270065, Y: 101.59277473281401, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 415.73315240713146, Y: 83.49430776561456, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 399.6697209639534, Y: 76.55068124633533, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 390.01739353396806, Y: 61.95340909866087, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 370.70700758299404, Y: 56.746779245826815, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 353.22348371337785, Y: 55.98458979316189, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 333.5332552237343, Y: 59.490998500889816, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 313.84302673409076, Y: 62.99740720861769, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 294.15279824444724, Y: 66.50381591634562, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 274.46256975480367, Y: 70.01022462407349, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 254.7723412651601, Y: 73.51663333180142, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 243.8863187812749, Y: 87.21854171892994, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 227.27956602381042, Y: 92.73792047213823, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 217.22536282760151, Y: 110.02702102969596, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 207.17115963139256, Y: 127.31612158725369, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 197.1169564351837, Y: 144.60522214481142, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 194.7585268362201, Y: 161.94549925291892, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 180.85382106399956, Y: 172.57124900280485, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 170.7996784610311, Y: 189.86038479726184, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 160.74553585806265, Y: 207.14952059171884, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 155.45822250204057, Y: 223.8317442834978, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 139.23698869399, Y: 230.398619002257, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 122.78086414895822, Y: 241.7650592963158, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 106.32473960392653, Y: 253.1314995903746, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 100.75923859590532, Y: 269.5086928845062, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 86.64038134275219, Y: 279.5009464605881, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 69.34447998940013, Y: 279.30331539332616, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 55.45763161412492, Y: 268.9910555117216, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 35.45763161412492, Y: 268.9910555117216, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 18.32118694653377, Y: 272.53978989896075, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 4.75, Y: 261.4910733916546, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 4.75, Y: 243.99103763178863, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 18.32118694653377, Y: 232.9423211244825, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 35.45763161412492, Y: 236.49105551172158, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 55.45763161412492, Y: 236.49105551172158, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 69.95376385163067, Y: 225.98116456285504, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 87.85427412608098, Y: 226.39029720469802, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 104.31039867111267, Y: 215.0238569106392, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_2.svg

Text: 'C', X: 120.76652321614446, Y: 203.6574166165804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 132.65069019206996, Y: 190.81153886189506, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 142.70483279503847, Y: 173.52240306743806, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 152.75897539800698, Y: 156.23326727298104, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 155.11738462054277, Y: 138.8929124340783, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 169.02216802915243, Y: 128.2671419509719, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 179.07637122536127, Y: 110.97804139341417, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 189.13057442157023, Y: 93.6889408358565, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 199.18477761777908, Y: 76.39984027829877, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 195.7687816748331, Y: 59.23647896071952, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 202.29389787220825, Y: 42.99847235243311, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 216.6362516626626, Y: 32.971165248856494, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 234.12751849201592, Y: 32.418368085002555, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 249.07442711510237, Y: 41.52001203613065, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 268.7646556047458, Y: 38.01360332840272, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 288.4548840943894, Y: 34.50719462067485, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 308.145112584033, Y: 31.000785912946924, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 327.8353410736765, Y: 27.494377205219052, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 347.52556956332, Y: 23.987968497491124, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 363.67104379416327, Y: 17.23714174359077, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 379.1677810938494, Y: 25.367402075493942, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 398.4781670448234, Y: 30.57403192832794, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 414.16043228506203, Y: 22.80765845451117, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 431.53723425840917, Y: 24.880519563963503, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 444.952559139624, Y: 36.1179150954672, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 450.0398230708349, Y: 52.86216024698717, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 445.14316122883054, Y: 69.66313351656464, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 453.6546530743998, Y: 87.76160048376408, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 462.16614491996893, Y: 105.86006745096353, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 470.67763676553807, Y: 123.95853441816297, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 479.18912861110726, Y: 142.0570013853624, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 489.9103575223297, Y: 155.8883155179085, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 486.09472303008613, Y: 172.96727723756817, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 486.09472303008613, Y: 192.96727723756817, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 503.59472303008613, Y: 192.96727723756817, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 316.84472303008613, Y: 212.96727723756817, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: 373.9220436056019, Y: 84.30853635206523, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: 515.5733741584586, Y: 59.71185423045523, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: 411.4868586538171, Y: 207.10941286129912, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 383.0769832136635, Y: 91.88248111058084, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 238.24908040854285, Y: 106.27807912252541, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 130.39730444301696, Y: 258.22118384134757, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 9.825903140896301, Y: 213.51341787175218, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 134.07826644450887, Y: 128.83873953447417, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 261.5082468970179, Y: 18.323374838759207, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '100', X: 453.3852282795704, Y: 25.086661750217672, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '110', X: 495.34472303008613, Y: 212.96727723756817, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'KPNB1, -32.1 ± 1.4
 kcal/mol, AUC: 0.667', X: 188.17236151504306, Y: 297.30094646058814, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 533.5733741584586, 297.30094646058814)
Updated viewBox: -0.25 0.0 538.8233741584586 302.30094646058814
Updated SVG: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_10.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_10.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGACCGUGUCUCCCGAUCGGCUGGAGCUGGAAGCGGCGCAGAAGUUCCUGGAGCGUGCGGCCGUGGAGAACCUGCCCACUUUCCUUGUGGAACUGUCCAGAGUGCUGGCA', '-structureDBN', '.........((((.((....(((..((((....)))).)))....))..)))).(((.(((...((....)).)))))).((((....)))).((.((((....))))))', '-o', '/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_2.svg', '-title', 'KPNB1, -32.0 ± 1.7\n kcal/mol, AUC: 0.758', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,7,8,9,11,15,17,19,20,22,23,24,26,28,29,30,33,35,36,38,41,44,45,46,49,50,51,53,55,56,57,59,60,63,64,65,66,68,73,74,80,81,82,85,86,87,88,89,90,94,95,96,100,102,103,104,106,107,108', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '3,10,12,76,77,47,52,61', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,70,72,13,78,16,83,84,25,91,31,97,34,98,99,37,105,109,110,48,58', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,4,5,69,71,75,14,79,18,21,27,92,93,32,101,39,40,42,43,54,62']
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 4.75, Y: 362.0457044683159, Width: 10.5, Height: 8
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Text: 'G', X: 22.25, Y: 362.0457044683159, Width: 10.5, Height: 8
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Text: 'A', X: 39.75, Y: 362.0457044683159, Width: 10.5, Height: 8
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Text: 'C', X: 57.25, Y: 362.0457044683159, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 74.75, Y: 362.0457044683159, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 92.25, Y: 362.0457044683159, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 109.75, Y: 362.0457044683159, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 127.25, Y: 362.0457044683159, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 144.75, Y: 362.0457044683159, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 162.25, Y: 362.0457044683159, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 162.25, Y: 342.0457044683159, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 162.25, Y: 322.04570446831593, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 162.25, Y: 302.04570446831593, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 153.45286953776704, Y: 286.9176537464117, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 156.50954010935607, Y: 269.6867458181905, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 149.63006490963818, Y: 250.9071605997554, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 132.9590040154254, Y: 245.58495757404205, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 120.3267625916468, Y: 233.4739463447171, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 114.30722245651623, Y: 217.04180549371983, Width: 10.5, Height: 8
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Text: 'G', X: 116.12689475623904, Y: 199.6366651866989, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 125.41501223817647, Y: 184.80490905240413, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 118.5355411720306, Y: 166.02532231972918, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 111.65607010588471, Y: 147.24573558705418, Width: 10.5, Height: 8
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Text: 'G', X: 98.19205853892196, Y: 136.0667226079599, Width: 10.5, Height: 8
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Text: 'A', X: 95.13529763781821, Y: 118.8357577059137, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 103.93244147050659, Y: 103.70763161412503, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 103.93244147050657, Y: 83.70763161412492, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 103.93244147050657, Y: 63.70763161412492, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 103.93244147050657, Y: 43.70763161412492, Width: 10.5, Height: 8
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Text: 'G', X: 100.38370708326747, Y: 26.57118694653377, Width: 10.5, Height: 8
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Text: 'A', X: 111.43242359057359, Y: 13.0, Width: 10.5, Height: 8
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Text: 'A', X: 128.93245935043956, Y: 13.0, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 139.98117585774565, Y: 26.57118694653377, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 136.43244147050657, Y: 43.70763161412492, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 136.43244147050657, Y: 63.70763161412492, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 136.43244147050657, Y: 83.70763161412492, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 136.43244147050657, Y: 103.70763161412492, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 145.22957242175153, Y: 118.83568509258942, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 142.17289854648152, Y: 136.0665951045671, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 149.05236961262742, Y: 154.84618183724206, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 155.9318406787733, Y: 173.62576856991706, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 172.60289746802508, Y: 178.94797351989246, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 185.2351354251617, Y: 191.05898356011107, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 191.25467441647714, Y: 207.49112128872184, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 189.43500399493996, Y: 224.89625844868078, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 180.14689088959523, Y: 239.7280134002138, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 187.02636608931311, Y: 258.5075986186489, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 200.49038105511934, Y: 269.68661024761445, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 203.54714415869086, Y: 286.91757653881945, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 194.75, Y: 302.04570446831593, Width: 10.5, Height: 8
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Text: 'G', X: 194.75, Y: 322.04570446831593, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 194.75, Y: 342.0457044683159, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 194.75, Y: 362.0457044683159, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 212.25, Y: 362.0457044683159, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 229.75, Y: 362.0457044683159, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 229.75, Y: 342.0457044683159, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 229.75, Y: 322.04570446831593, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 225.93438113341733, Y: 304.9666728068809, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 236.65572209255674, Y: 291.13536347387856, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 245.16734010780453, Y: 273.03695584330205, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 253.67895812305233, Y: 254.93854821272555, Width: 10.5, Height: 8
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Text: 'C', X: 250.2823675962399, Y: 237.77133068056793, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 257.7300371807988, Y: 221.93521995973475, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 273.11902333116353, Y: 213.60279592664972, Width: 10.5, Height: 8
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Text: 'A', X: 321.4180284343864, Y: 195.21912551160494, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'U', X: 297.25, Y: 362.04570446831593, Width: 10.5, Height: 8
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Text: 'U', X: 297.25, Y: 342.04570446831593, Width: 10.5, Height: 8
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Text: 'C', X: 297.25, Y: 322.04570446831593, Width: 10.5, Height: 8
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Text: 'C', X: 297.25, Y: 302.04570446831593, Width: 10.5, Height: 8
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Text: 'U', X: 333.2987343872391, Y: 284.9092598007247, Width: 10.5, Height: 8
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Text: 'G', X: 329.75, Y: 302.04570446831593, Width: 10.5, Height: 8
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Text: 'G', X: 329.75, Y: 322.04570446831593, Width: 10.5, Height: 8
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Text: 'A', X: 329.75, Y: 342.04570446831593, Width: 10.5, Height: 8
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Text: 'A', X: 329.75, Y: 362.04570446831593, Width: 10.5, Height: 8
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Text: 'C', X: 347.25, Y: 362.04570446831593, Width: 10.5, Height: 8
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Text: 'G', X: 364.75, Y: 342.04570446831593, Width: 10.5, Height: 8
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Text: 'U', X: 360.93438113341733, Y: 324.9666728068809, Width: 10.5, Height: 8
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Text: 'C', X: 380.16734010780453, Y: 293.03695584330205, Width: 10.5, Height: 8
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Text: 'A', X: 401.2721976201536, Y: 239.8227489584172, Width: 10.5, Height: 8
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Text: 'G', X: 417.0460443424695, Y: 232.24402801240848, Width: 10.5, Height: 8
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Text: 'U', X: 432.88218337905545, Y: 239.69170899446624, Width: 10.5, Height: 8
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Text: 'G', X: 437.1047541711301, Y: 256.6746753873702, Width: 10.5, Height: 8
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Text: 'C', X: 426.60048853798696, Y: 270.67151985692675, Width: 10.5, Height: 8
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Text: 'U', X: 418.08887052273917, Y: 288.76992748750325, Width: 10.5, Height: 8
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Text: 'C', X: 397.25, Y: 342.04570446831593, Width: 10.5, Height: 8
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Text: 'A', X: 397.25, Y: 362.04570446831593, Width: 10.5, Height: 8
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Text: '1', X: 5.5, Y: 382.0457044683159, Width: 9.0, Height: 8
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Text: '80', X: 276.0, Y: 382.04570446831593, Width: 18.0, Height: 8
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Text: '90', X: 346.0, Y: 322.04570446831593, Width: 18.0, Height: 8
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Text: '100', X: 371.98886977387224, Y: 246.22695767906976, Width: 27.0, Height: 8
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Text: '110', X: 389.0, Y: 382.04570446831593, Width: 27.0, Height: 8
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Text: 'KPNB1, -32.0 ± 1.7
 kcal/mol, AUC: 0.758', X: 154.92737708556504, Y: 394.84570446831594, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 447.6047541711301, 394.84570446831594)
Updated viewBox: -0.25 0.0 452.8547541711301 399.84570446831594
Updated SVG: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_2.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_2.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGACCGUGUCUCCCGAUCGGCUGGAGCUGGAAGCGGCGCAGAAGUUCCUGGAGCGUGCGGCCGUGGAGAACCUGCCCACUUUCCUUGUGGAACUGUCCAGAGUGCUGGCA', '-structureDBN', '((((...))))......((((.((((((....((...))...)))))).((((.(((.(((...((....)).)))))).)))).(.((((....)))).)..))))...', '-o', '/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_9.svg', '-title', 'KPNB1, -31.2 ± 1.1\n kcal/mol, AUC: 0.668', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,7,8,9,11,15,17,19,20,22,23,24,26,28,29,30,33,35,36,38,41,44,45,46,49,50,51,53,55,56,57,59,60,63,64,65,66,68,73,74,80,81,82,85,86,87,88,89,90,94,95,96,100,102,103,104,106,107,108', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '3,10,12,76,77,47,52,61', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,70,72,13,78,16,83,84,25,91,31,97,34,98,99,37,105,109,110,48,58', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,4,5,69,71,75,14,79,18,21,27,92,93,32,101,39,40,42,43,54,62']Output file: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_9.svg


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Text: 'U', X: 117.3949162005801, Y: 392.6819467725294, Width: 10.5, Height: 8
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Text: 'C', X: 117.3949162005801, Y: 412.6819467725294, Width: 10.5, Height: 8
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Text: 'G', X: 187.3949162005801, Y: 432.6819467725294, Width: 10.5, Height: 8
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Text: 'U', X: 222.3949162005801, Y: 432.6819467725294, Width: 10.5, Height: 8
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Text: 'C', X: 239.8949162005801, Y: 432.6819467725294, Width: 10.5, Height: 8
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Text: 'G', X: 239.8949162005801, Y: 412.6819467725294, Width: 10.5, Height: 8
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Text: 'C', X: 239.8949162005801, Y: 372.68194677252944, Width: 10.5, Height: 8
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Text: 'G', X: 192.72898160679614, Y: 345.5160121787455, Width: 10.5, Height: 8
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Text: 'A', X: 172.72898160679614, Y: 345.5160121787455, Width: 10.5, Height: 8
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Text: 'G', X: 152.72898160679614, Y: 345.5160121787455, Width: 10.5, Height: 8
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Text: 'C', X: 132.72898160679614, Y: 345.5160121787455, Width: 10.5, Height: 8
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Text: 'U', X: 112.72898160679614, Y: 345.5160121787455, Width: 10.5, Height: 8
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Text: 'A', X: 53.27169531766242, Y: 352.840788793472, Width: 10.5, Height: 8
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Text: 'G', X: 45.383747717284336, Y: 337.21925260763976, Width: 10.5, Height: 8
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Text: 'G', X: 9.257743777056874, Y: 327.21162818023754, Width: 10.5, Height: 8
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Text: 'G', X: 33.86988549527803, Y: 300.8368258505822, Width: 10.5, Height: 8
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Text: 'C', X: 53.271857877005004, Y: 305.6910474873334, Width: 10.5, Height: 8
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Text: 'A', X: 67.58670702245814, Y: 295.62451412460524, Width: 10.5, Height: 8
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Text: 'G', X: 84.95540505598927, Y: 293.4848111966239, Width: 10.5, Height: 8
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Text: 'U', X: 172.72898160679614, Y: 313.0160121787455, Width: 10.5, Height: 8
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Text: 'C', X: 192.72898160679614, Y: 313.0160121787455, Width: 10.5, Height: 8
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Text: 'C', X: 212.72898160679614, Y: 313.0160121787455, Width: 10.5, Height: 8
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Text: 'U', X: 220.40537325765467, Y: 299.7415994516053, Width: 10.5, Height: 8
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Text: 'G', X: 220.66729040656716, Y: 230.77613403928495, Width: 10.5, Height: 8
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Text: 'C', X: 211.05583709414014, Y: 216.15192925467318, Width: 10.5, Height: 8
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Text: 'G', X: 214.56099367468596, Y: 199.00663025742375, Width: 10.5, Height: 8
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Text: 'U', X: 210.78593299624436, Y: 179.36613848980033, Width: 10.5, Height: 8
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Text: 'G', X: 207.0108723178028, Y: 159.72564672217686, Width: 10.5, Height: 8
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Text: 'C', X: 200.04012172838043, Y: 143.67382732226497, Width: 10.5, Height: 8
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Text: 'G', X: 207.9580405709546, Y: 128.06745583399993, Width: 10.5, Height: 8
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Text: 'G', X: 212.9005293994063, Y: 108.68778080626453, Width: 10.5, Height: 8
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Text: 'C', X: 217.843018227858, Y: 89.30810577852913, Width: 10.5, Height: 8
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Text: 'C', X: 211.32280884000681, Y: 73.78383127972722, Width: 10.5, Height: 8
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Text: 'A', X: 242.70173211863244, Y: 173.23166488733273, Width: 10.5, Height: 8
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Text: 'C', X: 246.47679279707404, Y: 192.8721566549562, Width: 10.5, Height: 8
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Text: 'U', X: 293.24531652276835, Y: 301.4709375685722, Width: 10.5, Height: 8
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Text: 'G', X: 306.89245796306284, Y: 290.5163526440841, Width: 10.5, Height: 8
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Text: 'G', X: 343.4869790347052, Y: 286.76025387592216, Width: 10.5, Height: 8
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Text: 'G', X: 362.6811229151311, Y: 281.14021466809544, Width: 10.5, Height: 8
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Text: 'A', X: 381.87526679555697, Y: 275.52017546026866, Width: 10.5, Height: 8
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Text: 'A', X: 397.3240347032697, Y: 267.2990549934338, Width: 10.5, Height: 8
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Text: 'C', X: 413.4531114456272, Y: 274.08905757338397, Width: 10.5, Height: 8
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Text: 'U', X: 418.3706558010681, Y: 290.8839677877572, Width: 10.5, Height: 8
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Text: 'G', X: 408.45100105543287, Y: 305.301030641334, Width: 10.5, Height: 8
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Text: 'U', X: 391.00783050827545, Y: 306.7106592659607, Width: 10.5, Height: 8
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Text: 'C', X: 371.81368662784956, Y: 312.33069847378744, Width: 10.5, Height: 8
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Text: 'C', X: 352.6195427474237, Y: 317.9507376816142, Width: 10.5, Height: 8
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Text: 'A', X: 333.42539886699785, Y: 323.57077688944094, Width: 10.5, Height: 8
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Text: 'G', X: 319.77821870000645, Y: 334.52543222357525, Width: 10.5, Height: 8
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Text: 'A', X: 302.3777709220195, Y: 332.6614533810046, Width: 10.5, Height: 8
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Text: 'G', X: 297.8247550965858, Y: 349.5587918369079, Width: 10.5, Height: 8
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Text: 'U', X: 287.3320390587965, Y: 363.5642518490003, Width: 10.5, Height: 8
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Text: 'G', X: 272.3949162005801, Y: 372.68194677252944, Width: 10.5, Height: 8
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Text: 'C', X: 272.3949162005801, Y: 392.68194677252944, Width: 10.5, Height: 8
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Text: 'U', X: 272.3949162005801, Y: 412.6819467725294, Width: 10.5, Height: 8
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Text: 'G', X: 272.3949162005801, Y: 432.6819467725294, Width: 10.5, Height: 8
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Text: 'G', X: 289.8949162005801, Y: 432.6819467725294, Width: 10.5, Height: 8
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Text: 'C', X: 307.3949162005801, Y: 432.6819467725294, Width: 10.5, Height: 8
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Text: 'A', X: 324.8949162005801, Y: 432.68194677252944, Width: 10.5, Height: 8
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Text: '1', X: 85.6449162005801, Y: 452.6819467725294, Width: 9.0, Height: 8
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Text: '10', X: 133.6449162005801, Y: 412.6819467725294, Width: 18.0, Height: 8
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Text: '20', X: 216.1449162005801, Y: 392.68194677252944, Width: 18.0, Height: 8
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Text: '30', X: 83.6506735763404, Y: 384.8971668607476, Width: 18.0, Height: 8
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Text: '40', X: 56.64673220110406, Y: 276.9616027207461, Width: 18.0, Height: 8
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Text: '50', X: 208.86541640884764, Y: 284.7440945249133, Width: 18.0, Height: 8
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Text: '60', X: 189.77085437167094, Y: 103.74529197781277, Width: 18.0, Height: 8
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Text: '70', X: 308.9860946772585, Y: 53.16618152457852, Width: 18.0, Height: 8
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Text: '80', X: 271.9788109134386, Y: 203.7213804055188, Width: 18.0, Height: 8
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Text: '90', X: 353.3110837073043, Y: 261.94607078766956, Width: 18.0, Height: 8
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Text: '100', X: 317.1482242729288, Y: 353.7195859522584, Width: 27.0, Height: 8
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Text: '110', X: 316.6449162005801, Y: 452.68194677252944, Width: 27.0, Height: 8
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Text: 'KPNB1, -31.2 ± 1.1
 kcal/mol, AUC: 0.668', X: 145.56032790053405, Y: 465.48194677252945, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 428.8706558010681, 465.48194677252945)
Updated viewBox: -0.25 0.0 434.1206558010681 470.48194677252945
Updated SVG: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_9.svg/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_13.svg


Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_9.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGACCGUGUCUCCCGAUCGGCUGGAGCUGGAAGCGGCGCAGAAGUUCCUGGAGCGUGCGGCCGUGGAGAACCUGCCCACUUUCCUUGUGGAACUGUCCAGAGUGCUGGCA', '-structureDBN', '.....((.(((((....((((((..(((...((.(((......))).))..)))...)))))).))))))).(((((((((......((((....)))))))))..))))', '-o', '/disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_13.svg', '-title', 'KPNB1, -31.6 ± 1.8\n kcal/mol, AUC: 0.565', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,7,8,9,11,15,17,19,20,22,23,24,26,28,29,30,33,35,36,38,41,44,45,46,49,50,51,53,55,56,57,59,60,63,64,65,66,68,73,74,80,81,82,85,86,87,88,89,90,94,95,96,100,102,103,104,106,107,108', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '3,10,12,76,77,47,52,61', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,70,72,13,78,16,83,84,25,91,31,97,34,98,99,37,105,109,110,48,58', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '67,4,5,69,71,75,14,79,18,21,27,92,93,32,101,39,40,42,43,54,62']
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Text: 'G', X: 133.39300088156375, Y: 144.57478557565858, Width: 10.5, Height: 8
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Text: 'A', X: 146.8083603874745, Y: 133.33747090916214, Width: 10.5, Height: 8
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Text: 'U', X: 164.18514534270608, Y: 131.2646814344868, Width: 10.5, Height: 8
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Text: 'G', X: 199.1777636400141, Y: 133.82451344227584, Width: 10.5, Height: 8
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Text: 'A', X: 404.98851747723194, Y: 51.141939483285796, Width: 10.5, Height: 8
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Text: 'G', X: 424.29889477134316, Y: 45.93527752392299, Width: 10.5, Height: 8
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Text: 'C', X: 438.17803893489895, Y: 35.27616134825166, Width: 10.5, Height: 8
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Text: 'G', X: 474.84475521131776, Y: 32.30645295790964, Width: 10.5, Height: 8
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Text: 'C', X: 494.15511425750174, Y: 27.099723321423653, Width: 10.5, Height: 8
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Text: 'G', X: 506.43035363501235, Y: 14.62704718340558, Width: 10.5, Height: 8
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Text: 'C', X: 523.8545284872699, Y: 13.0, Width: 10.5, Height: 8
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Text: 'A', X: 538.2267779215285, Y: 22.984367682458583, Width: 10.5, Height: 8
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Text: 'G', X: 542.7826600445226, Y: 39.88090844974158, Width: 10.5, Height: 8
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Text: 'A', X: 535.3779037013065, Y: 55.73709762989063, Width: 10.5, Height: 8
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Text: 'A', X: 519.4976309840478, Y: 63.090062354718384, Width: 10.5, Height: 8
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Text: 'G', X: 502.6160499167913, Y: 58.47905677147264, Width: 10.5, Height: 8
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Text: 'U', X: 483.30569087060735, Y: 63.68578640795863, Width: 10.5, Height: 8
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Text: 'U', X: 463.99533182442343, Y: 68.8925160444445, Width: 10.5, Height: 8
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Text: 'C', X: 450.1161474317056, Y: 79.55170178224535, Width: 10.5, Height: 8
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Text: 'C', X: 432.7597204553075, Y: 77.3146406268537, Width: 10.5, Height: 8
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Text: 'U', X: 413.4493431611963, Y: 82.52130258621642, Width: 10.5, Height: 8
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Text: 'G', X: 403.7969892462587, Y: 97.11863329771265, Width: 10.5, Height: 8
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Text: 'G', X: 387.7334886172051, Y: 104.06225969466075, Width: 10.5, Height: 8
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Text: 'A', X: 370.48738573112524, Y: 101.09208541648289, Width: 10.5, Height: 8
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Text: 'G', X: 353.4645769303088, Y: 111.59084632102994, Width: 10.5, Height: 8
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Text: 'C', X: 336.44176812949235, Y: 122.089607225577, Width: 10.5, Height: 8
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Text: 'G', X: 331.3544597536642, Y: 138.83383887379634, Width: 10.5, Height: 8
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Text: 'U', X: 317.93910504481914, Y: 150.07119879665495, Width: 10.5, Height: 8
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Text: 'G', X: 300.5622975694903, Y: 152.14401378245478, Width: 10.5, Height: 8
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Text: 'C', X: 284.8800529437707, Y: 144.3775986828679, Width: 10.5, Height: 8
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Text: 'G', X: 265.56965317278724, Y: 149.58417727968194, Width: 10.5, Height: 8
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Text: 'G', X: 246.2592534018038, Y: 154.79075587649598, Width: 10.5, Height: 8
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Text: 'C', X: 226.9488536308203, Y: 159.99733447330996, Width: 10.5, Height: 8
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Text: 'C', X: 207.63845385983686, Y: 165.20391307012395, Width: 10.5, Height: 8
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Text: 'G', X: 188.3280540888534, Y: 170.410491666938, Width: 10.5, Height: 8
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Text: 'G', X: 154.10048853798693, Y: 210.04974539094488, Width: 10.5, Height: 8
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Text: 'U', X: 55.20302038964928, Y: 127.94853199801574, Width: 10.5, Height: 8
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Text: 'U', X: 63.96550783947646, Y: 112.91732854003234, Width: 10.5, Height: 8
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Text: 'C', X: 165.94641044734942, Y: 45.726666659426996, Width: 10.5, Height: 8
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Text: 'U', X: 161.91051807150882, Y: 85.1179233806387, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 147.76838244777787, Y: 99.26005900436965, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 133.62624682404694, Y: 113.4021946281006, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 119.48411120031602, Y: 127.54433025183167, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 119.48411120031602, Y: 145.75153438400454, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 133.62624682404694, Y: 159.8936700077355, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 147.7683824477779, Y: 174.03580563146645, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 161.91051807150885, Y: 188.1779412551974, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 176.05265369523983, Y: 202.32007687892832, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 192.22521682005913, Y: 209.04799796155692, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 198.9283704339126, Y: 225.23084232679219, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 192.25, Y: 241.42393000233406, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 192.25, Y: 261.42393000233403, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 192.25, Y: 281.42393000233403, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 192.25, Y: 301.42393000233403, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 5.5, Y: 321.42393000233403, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: 85.81893247722807, Y: 223.9035633620724, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: 209.53158481418353, Y: 109.30753507447838, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: 360.24392854651154, Y: 27.090169381167982, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 550.829487982425, Y: 11.469643471073653, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 412.8897193945297, Y: 112.45043952981365, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 247.71583199861783, Y: 174.10115564747943, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 141.0, Y: 281.42393000233403, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 92.75314081175321, Y: 197.01677602002925, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 106.89527643548408, Y: 62.136952992075976, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '100', X: 125.37624682404697, Y: 131.6093987602736, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '110', X: 184.0, Y: 321.42393000233403, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'KPNB1, -31.6 ± 1.8
 kcal/mol, AUC: 0.565', X: 207.7663300222613, Y: 334.22393000233404, Width: 142.5, Height: 23
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Updated viewBox: -0.25 -1.5303565289263474 574.079487982425 340.7542865312604
Updated SVG: /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_13.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/72297fd3-6872-4644-8dbb-ee030baf29c4/final_image/KPNB1_fold_final_13.svg
