Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_4.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 158.52 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 158.52 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 158.52 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.10 MB
Based on canonical annotations, the following gene is in your area of interest: ATP13A3(-)
write fasta - Elapsed time since the previous call: 1.18 seconds
write fasta - Current memory usage: 172.10 MB
Length of region: 109 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.20 seconds
write dat - Current memory usage: 175.79 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/fasta/ATP13A3.fasta" "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/ct/ATP13A3.ct" --SHAPE "ATP13A3.dat"

fold - Elapsed time since the previous call: 0.16 seconds
fold - Current memory usage: 175.79 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/ct/ATP13A3.ct" "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/fold_FE/ATP13A3.txt" -sh "ATP13A3.dat"

efn2 - Elapsed time since the previous call: 0.53 seconds
efn2 - Current memory usage: 175.79 MB
This region has 9 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/ct/ATP13A3.ct" 1 "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/fold_dbn/ATP13A3_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.79 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/ct/ATP13A3.ct" 2 "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/fold_dbn/ATP13A3_temp2.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.79 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/ct/ATP13A3.ct" 3 "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/fold_dbn/ATP13A3_temp3.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.79 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/ct/ATP13A3.ct" 4 "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/fold_dbn/ATP13A3_temp4.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.79 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/ct/ATP13A3.ct" 5 "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/fold_dbn/ATP13A3_temp5.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.79 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/ct/ATP13A3.ct" 6 "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/fold_dbn/ATP13A3_temp6.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.79 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/ct/ATP13A3.ct" 7 "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/fold_dbn/ATP13A3_temp7.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.79 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/ct/ATP13A3.ct" 8 "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/fold_dbn/ATP13A3_temp8.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.79 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/ct/ATP13A3.ct" 9 "/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/fold_dbn/ATP13A3_temp9.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.79 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGACAGCGGCGGCCGGGUCCCCCGCGGUCCCUGGGGCUGGUCCGGCCGCGAGGGAGGCCGCGGAGGAGGCGGCGCGGCGGCGGCCAGUGAGCGGCCCCGAUCUGACAGA', '-structureDBN', '......(.((.((((..(((.((((((((((((.(((((...))))).)..))).)))))))).)))..)))))).)(((.((((.......)))))))..........', '-o', '/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_4.svg', '-title', 'ATP13A3, -65.8 ± 1.9\n kcal/mol, AUC: 0.917', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,8,9,11,12,15,16,17,18,24,26,27,28,32,33,34,35,36,38,39,40,41,44,45,48,50,52,53,54,56,57,60,62,63,65,66,68,69,71,72,74,76,77,79,80,82,83,87,88,89,91,93,94,99,101,103,104,108', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '13,14,19,20,84,22,23,85,29,95,96,97,43,46,47,58,59', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,98,37,70,42,75,78,49,21,92', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,3,4,5,67,7,73,10,81,86,25,90,30,31,100,102,105,106,107,109,51,55,61']
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Text: 'C', X: 159.75, Y: 571.3721222439565, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_1.svg


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Text: 'ATP13A3, -65.8 ± 1.9
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Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_final_4.svg
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Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: '109', X: 497.8029114877677, Y: 360.7504220284569, Width: 27.0, Height: 8
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Text: 'ATP13A3, -61.5 ± 1.4
 kcal/mol, AUC: 0.941', X: 196.90144945528647, Y: 421.2199936686083, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 524.8029114877677, 421.2199936686083)
Updated viewBox: -9.0 0.0 538.8029114877677 426.2199936686083
Updated SVG: /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_final_1.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGACAGCGGCGGCCGGGUCCCCCGCGGUCCCUGGGGCUGGUCCGGCCGCGAGGGAGGCCGCGGAGGAGGCGGCGCGGCGGCGGCCAGUGAGCGGCCCCGAUCUGACAGA', '-structureDBN', '.......((.(((((((....)).))))))).(((((((.((.((((((.......(((((.......)))))......))))))...)).)))))))...........', '-o', '/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_7.svg', '-title', 'ATP13A3, -62.7 ± 1.4\n kcal/mol, AUC: 0.816', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,8,9,11,12,15,16,17,18,24,26,27,28,32,33,34,35,36,38,39,40,41,44,45,48,50,52,53,54,56,57,60,62,63,65,66,68,69,71,72,74,76,77,79,80,82,83,87,88,89,91,93,94,99,101,103,104,108', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '13,14,19,20,84,22,23,85,29,95,96,97,43,46,47,58,59', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,98,37,70,42,75,78,49,21,92', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,3,4,5,67,7,73,10,81,86,25,90,30,31,100,102,105,106,107,109,51,55,61']Output file: /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_7.svg


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Text: 'C', X: 159.75, Y: 511.5840777690778, Width: 10.5, Height: 8
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Text: 'G', X: 194.75, Y: 491.5840777690778, Width: 10.5, Height: 8
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Text: 'U', X: 194.75, Y: 411.5840777690778, Width: 10.5, Height: 8
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Text: 'G', X: 194.75, Y: 391.5840777690778, Width: 10.5, Height: 8
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Text: 'C', X: 194.75, Y: 339.2330049089123, Width: 10.5, Height: 8
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'G', X: 44.5002023593689, Y: 86.50968761652149, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 35.48777318172836, Y: 68.65538504492787, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 19.83220385140237, Y: 60.83532485514405, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 11.815336162672338, Y: 45.27961770664439, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 14.531090017022876, Y: 27.99161974762478, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Text: '109', X: 411.5, Y: 531.5840777690778, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'ATP13A3, -62.7 ± 1.4
 kcal/mol, AUC: 0.816', X: 146.25, Y: 544.3840777690777, Width: 142.5, Height: 23
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Updated SVG: /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_final_7.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_final_7.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGACAGCGGCGGCCGGGUCCCCCGCGGUCCCUGGGGCUGGUCCGGCCGCGAGGGAGGCCGCGGAGGAGGCGGCGCGGCGGCGGCCAGUGAGCGGCCCCGAUCUGACAGA', '-structureDBN', '........((((((((((((((((.......)))))..)))))))))))...((.((((((......(((.((......)).))).....))))))))...........', '-o', '/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_5.svg', '-title', 'ATP13A3, -62.1 ± 1.4\n kcal/mol, AUC: 0.905', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,8,9,11,12,15,16,17,18,24,26,27,28,32,33,34,35,36,38,39,40,41,44,45,48,50,52,53,54,56,57,60,62,63,65,66,68,69,71,72,74,76,77,79,80,82,83,87,88,89,91,93,94,99,101,103,104,108', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '13,14,19,20,84,22,23,85,29,95,96,97,43,46,47,58,59', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,98,37,70,42,75,78,49,21,92', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,3,4,5,67,7,73,10,81,86,25,90,30,31,100,102,105,106,107,109,51,55,61']Output file: /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_5.svg


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Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Updated SVG: /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_final_5.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_final_5.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGACAGCGGCGGCCGGGUCCCCCGCGGUCCCUGGGGCUGGUCCGGCCGCGAGGGAGGCCGCGGAGGAGGCGGCGCGGCGGCGGCCAGUGAGCGGCCCCGAUCUGACAGA', '-structureDBN', '......(((.(((((((((((((((..((((((.(((((...))))).)).)))).(((((.......))))))))).)).))))......))))))))..........', '-o', '/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_2.svg', '-title', 'ATP13A3, -60.7 ± 1.5\n kcal/mol, AUC: 0.927', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,8,9,11,12,15,16,17,18,24,26,27,28,32,33,34,35,36,38,39,40,41,44,45,48,50,52,53,54,56,57,60,62,63,65,66,68,69,71,72,74,76,77,79,80,82,83,87,88,89,91,93,94,99,101,103,104,108', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '13,14,19,20,84,22,23,85,29,95,96,97,43,46,47,58,59', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,98,37,70,42,75,78,49,21,92', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,3,4,5,67,7,73,10,81,86,25,90,30,31,100,102,105,106,107,109,51,55,61']Output file: /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_2.svg


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Text: 'G', X: 310.4570054886052, Y: 178.054103698914, Width: 10.5, Height: 8
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Text: 'G', X: 304.3446708487752, Y: 161.65622162557906, Width: 10.5, Height: 8
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Text: 'C', X: 176.80370491587294, Y: 145.93728936812295, Width: 10.5, Height: 8
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Text: 'G', X: 158.7052379486735, Y: 154.4487812136921, Width: 10.5, Height: 8
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Text: 'C', X: 140.60677098147409, Y: 162.96027305926134, Width: 10.5, Height: 8
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Text: 'G', X: 134.76539056968682, Y: 179.45662177478405, Width: 10.5, Height: 8
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Text: 'G', X: 121.3347121459401, Y: 190.67571813488567, Width: 10.5, Height: 8
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Text: 'U', X: 104.06201511336951, Y: 193.4873339124001, Width: 10.5, Height: 8
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Text: 'C', X: 92.46479735528311, Y: 209.78164397056221, Width: 10.5, Height: 8
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Text: 'C', X: 80.86757959719671, Y: 226.0759540287244, Width: 10.5, Height: 8
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Text: 'C', X: 69.27036183911025, Y: 242.37026408688658, Width: 10.5, Height: 8
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Text: 'U', X: 62.47548993202298, Y: 258.49739202175056, Width: 10.5, Height: 8
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Text: 'G', X: 58.91534116617686, Y: 278.1779748577603, Width: 10.5, Height: 8
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Text: 'G', X: 62.607700252306586, Y: 295.28393536099725, Width: 10.5, Height: 8
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Text: 'G', X: 53.15667548310091, Y: 310.01232737000777, Width: 10.5, Height: 8
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Text: 'G', X: 49.596595691892674, Y: 329.69292268316406, Width: 10.5, Height: 8
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Text: 'C', X: 46.036515900684435, Y: 349.3735179963204, Width: 10.5, Height: 8
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Text: 'U', X: 42.47643610947614, Y: 369.05411330947675, Width: 10.5, Height: 8
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Text: 'G', X: 38.916356318267844, Y: 388.73470862263304, Width: 10.5, Height: 8
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Text: 'G', X: 34.880595571787865, Y: 405.7630211370774, Width: 10.5, Height: 8
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Text: 'U', X: 18.30634408946537, Y: 411.3795128973439, Width: 10.5, Height: 8
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Text: 'C', X: 4.75, Y: 400.3126105836688, Width: 10.5, Height: 8
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Text: 'C', X: 6.935388934388811, Y: 382.94957896191966, Width: 10.5, Height: 8
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Text: 'G', X: 10.495468725597107, Y: 363.2689836487633, Width: 10.5, Height: 8
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Text: 'G', X: 14.055548516805402, Y: 343.58838833560696, Width: 10.5, Height: 8
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Text: 'C', X: 17.61562830801364, Y: 323.9077930224507, Width: 10.5, Height: 8
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Text: 'C', X: 21.17570809922188, Y: 304.2271977092944, Width: 10.5, Height: 8
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Text: 'G', X: 17.483303365685288, Y: 287.1211710729373, Width: 10.5, Height: 8
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Text: 'C', X: 26.93439405766088, Y: 272.39273311326036, Width: 10.5, Height: 8
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Text: 'G', X: 30.494542823507004, Y: 252.71215027725054, Width: 10.5, Height: 8
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Text: 'A', X: 29.780029513089175, Y: 235.22674291198635, Width: 10.5, Height: 8
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Text: 'G', X: 42.79210799459673, Y: 223.52478522999618, Width: 10.5, Height: 8
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Text: 'G', X: 54.389325752683135, Y: 207.230475171834, Width: 10.5, Height: 8
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Text: 'G', X: 65.9865435107696, Y: 190.93616511367182, Width: 10.5, Height: 8
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Text: 'A', X: 77.583761268856, Y: 174.6418550555096, Width: 10.5, Height: 8
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Text: 'G', X: 74.58309373426772, Y: 157.40103157323745, Width: 10.5, Height: 8
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Text: 'G', X: 80.78448982940006, Y: 141.0366590991315, Width: 10.5, Height: 8
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Text: 'C', X: 72.47179199396135, Y: 122.84602813985214, Width: 10.5, Height: 8
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Text: 'C', X: 64.15909415852263, Y: 104.65539718057278, Width: 10.5, Height: 8
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Text: 'G', X: 55.84639632308392, Y: 86.46476622129342, Width: 10.5, Height: 8
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Text: 'C', X: 47.53369848764521, Y: 68.27413526201406, Width: 10.5, Height: 8
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Text: 'G', X: 32.19342786470031, Y: 59.85236052961352, Width: 10.5, Height: 8
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Text: 'G', X: 24.78633093166127, Y: 43.99723178674151, Width: 10.5, Height: 8
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Text: 'A', X: 28.17100103235623, Y: 26.82765984280684, Width: 10.5, Height: 8
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Text: 'G', X: 41.04120503545636, Y: 14.969833678324903, Width: 10.5, Height: 8
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Text: 'G', X: 58.429993023934, Y: 13.0, Width: 10.5, Height: 8
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Text: 'A', X: 73.62657478531276, Y: 21.67836938590517, Width: 10.5, Height: 8
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Text: 'G', X: 80.76619009507709, Y: 37.655731047239215, Width: 10.5, Height: 8
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Text: 'G', X: 77.0934737964742, Y: 54.76600127942618, Width: 10.5, Height: 8
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Text: 'C', X: 85.40617163191291, Y: 72.95663223870554, Width: 10.5, Height: 8
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Text: 'G', X: 93.71886946735162, Y: 91.1472631979849, Width: 10.5, Height: 8
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Text: 'G', X: 102.03156730279034, Y: 109.33789415726426, Width: 10.5, Height: 8
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Text: 'C', X: 110.34426513822905, Y: 127.52852511654362, Width: 10.5, Height: 8
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Text: 'G', X: 126.77559673242416, Y: 133.55026423756226, Width: 10.5, Height: 8
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Text: 'C', X: 144.8740636996236, Y: 125.038772391993, Width: 10.5, Height: 8
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Text: 'G', X: 162.97253066682305, Y: 116.52728054642387, Width: 10.5, Height: 8
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Text: 'G', X: 181.0709976340225, Y: 108.01578870085473, Width: 10.5, Height: 8
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Text: 'C', X: 194.90231176656852, Y: 97.29455978963222, Width: 10.5, Height: 8
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Text: 'G', X: 211.98127348622822, Y: 101.1101942818758, Width: 10.5, Height: 8
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Text: 'G', X: 231.98127348622822, Y: 101.1101942818758, Width: 10.5, Height: 8
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Text: 'C', X: 248.83924696107613, Y: 97.246463851415, Width: 10.5, Height: 8
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Text: 'G', X: 262.6815576332062, Y: 107.61517243899607, Width: 10.5, Height: 8
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Text: 'G', X: 280.96288226782883, Y: 115.72647132410316, Width: 10.5, Height: 8
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Text: 'C', X: 299.24420690245154, Y: 123.83777020921013, Width: 10.5, Height: 8
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Text: 'C', X: 317.52553153707413, Y: 131.94906909431722, Width: 10.5, Height: 8
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Text: 'A', X: 333.7849057120552, Y: 125.47738064091038, Width: 10.5, Height: 8
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Text: 'G', X: 351.08279201790106, Y: 128.12938542032384, Width: 10.5, Height: 8
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Text: 'U', X: 364.65653669299707, Y: 139.17490285932615, Width: 10.5, Height: 8
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Text: 'G', X: 370.7688596446769, Y: 155.57275357624542, Width: 10.5, Height: 8
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Text: 'A', X: 367.73684555118933, Y: 172.8080919987102, Width: 10.5, Height: 8
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Text: 'G', X: 356.3953035373195, Y: 186.13548577047308, Width: 10.5, Height: 8
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Text: 'C', X: 339.866917888292, Y: 191.88548297369172, Width: 10.5, Height: 8
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Text: 'G', X: 331.3552998730442, Y: 209.98389060426817, Width: 10.5, Height: 8
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Text: 'G', X: 322.8436818577964, Y: 228.08229823484467, Width: 10.5, Height: 8
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Text: 'C', X: 314.3320638425486, Y: 246.18070586542117, Width: 10.5, Height: 8
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Text: 'C', X: 305.82044582730083, Y: 264.27911349599765, Width: 10.5, Height: 8
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Text: 'C', X: 302.0048113350573, Y: 281.3580752156573, Width: 10.5, Height: 8
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Text: 'C', X: 302.0048113350573, Y: 301.3580752156573, Width: 10.5, Height: 8
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Text: 'G', X: 302.0048113350573, Y: 321.3580752156573, Width: 10.5, Height: 8
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Text: 'A', X: 319.5048113350573, Y: 321.3580752156573, Width: 10.5, Height: 8
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Text: 'U', X: 337.0048113350573, Y: 321.3580752156573, Width: 10.5, Height: 8
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Text: 'C', X: 354.5048113350573, Y: 321.3580752156573, Width: 10.5, Height: 8
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Text: 'U', X: 372.0048113350573, Y: 321.3580752156573, Width: 10.5, Height: 8
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Text: 'G', X: 389.5048113350573, Y: 321.3580752156573, Width: 10.5, Height: 8
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Text: 'A', X: 407.0048113350573, Y: 321.3580752156574, Width: 10.5, Height: 8
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Text: 'C', X: 424.5048113350573, Y: 321.3580752156574, Width: 10.5, Height: 8
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Text: 'A', X: 442.0048113350573, Y: 321.3580752156574, Width: 10.5, Height: 8
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Text: 'G', X: 459.5048113350573, Y: 321.3580752156574, Width: 10.5, Height: 8
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Text: 'A', X: 477.0048113350573, Y: 321.3580752156574, Width: 10.5, Height: 8
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Text: '1', X: 165.25481133505727, Y: 341.3580752156573, Width: 9.0, Height: 8
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Text: '10', X: 242.42037907457785, Y: 259.91831842022975, Width: 18.0, Height: 8
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Text: '20', X: 215.97838534646397, Y: 149.41736772415902, Width: 18.0, Height: 8
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Text: '30', X: 93.4118896553589, Y: 237.6731717868108, Width: 18.0, Height: 8
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Text: '40', X: 45.92164833456509, Y: 419.2249956641941, Width: 18.0, Height: 8
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Text: '50', X: 7.573160142807623, Y: 247.01495042906373, Width: 18.0, Height: 8
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Text: '60', X: 33.905765363804555, Y: 94.77746405673207, Width: 18.0, Height: 8
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Text: '70', X: 99.84680259119227, Y: 64.64393440326683, Width: 18.0, Height: 8
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Text: '80', X: 230.31546667295896, Y: 81.21908725485525, Width: 18.0, Height: 8
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Text: '90', X: 382.08525096915037, Y: 181.31971471868073, Width: 18.0, Height: 8
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Text: '100', X: 311.2548113350573, Y: 341.3580752156573, Width: 27.0, Height: 8
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Text: '109', X: 468.7548113350573, Y: 341.3580752156574, Width: 27.0, Height: 8
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Text: 'ATP13A3, -60.7 ± 1.5
 kcal/mol, AUC: 0.927', X: 174.87740566752865, Y: 432.02499566419414, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 495.7548113350573, 432.02499566419414)
Updated viewBox: -0.25 0.0 501.0048113350573 437.02499566419414
Updated SVG: /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_final_2.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_final_2.svg/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_3.svg


['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGACAGCGGCGGCCGGGUCCCCCGCGGUCCCUGGGGCUGGUCCGGCCGCGAGGGAGGCCGCGGAGGAGGCGGCGCGGCGGCGGCCAGUGAGCGGCCCCGAUCUGACAGA', '-structureDBN', '........((((((...((((.(((((((...(((.....)))))))))).))))))))))...((.(((.(((((((....))).))..)).)))))...........', '-o', '/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_3.svg', '-title', 'ATP13A3, -61.8 ± 2.0\n kcal/mol, AUC: 0.923', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,8,9,11,12,15,16,17,18,24,26,27,28,32,33,34,35,36,38,39,40,41,44,45,48,50,52,53,54,56,57,60,62,63,65,66,68,69,71,72,74,76,77,79,80,82,83,87,88,89,91,93,94,99,101,103,104,108', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '13,14,19,20,84,22,23,85,29,95,96,97,43,46,47,58,59', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,98,37,70,42,75,78,49,21,92', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,3,4,5,67,7,73,10,81,86,25,90,30,31,100,102,105,106,107,109,51,55,61']
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Text: 'G', X: 135.95286268950832, Y: 171.79069620778395, Width: 10.5, Height: 8
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Text: 'U', X: 169.97272276333175, Y: 143.5441892087226, Width: 10.5, Height: 8
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Text: 'C', X: 283.6939318325111, Y: 116.22195034086539, Width: 10.5, Height: 8
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Text: 'G', X: 177.25, Y: 186.918785533479, Width: 10.5, Height: 8
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Text: 'C', X: 177.25, Y: 226.918785533479, Width: 10.5, Height: 8
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Text: 'C', X: 177.25, Y: 246.918785533479, Width: 10.5, Height: 8
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Text: 'G', X: 177.25, Y: 266.91878553347897, Width: 10.5, Height: 8
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Text: 'C', X: 177.25, Y: 286.91878553347897, Width: 10.5, Height: 8
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Text: 'G', X: 194.75, Y: 286.91878553347897, Width: 10.5, Height: 8
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Text: 'G', X: 212.25, Y: 286.91878553347897, Width: 10.5, Height: 8
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Text: 'A', X: 229.75, Y: 286.91878553347897, Width: 10.5, Height: 8
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Text: 'G', X: 247.25, Y: 286.91878553347897, Width: 10.5, Height: 8
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Text: 'A', X: 243.43438113341733, Y: 249.839753872044, Width: 10.5, Height: 8
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Text: 'G', X: 254.15572209255674, Y: 236.00844453904162, Width: 10.5, Height: 8
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Text: 'G', X: 262.66734010780453, Y: 217.91003690846514, Width: 10.5, Height: 8
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Text: 'C', X: 271.1789581230523, Y: 199.81162927788867, Width: 10.5, Height: 8
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Text: 'G', X: 272.0195407881555, Y: 182.33190327482004, Width: 10.5, Height: 8
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Text: 'G', X: 284.9468813137564, Y: 170.5365114926714, Width: 10.5, Height: 8
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Text: 'C', X: 293.4584358993916, Y: 152.43807403150495, Width: 10.5, Height: 8
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Text: 'G', X: 294.29892310525656, Y: 134.95841779963413, Width: 10.5, Height: 8
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Text: 'C', X: 287.5631021910402, Y: 116.12682953386101, Width: 10.5, Height: 8
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Text: 'G', X: 278.2241951561316, Y: 101.37737158575587, Width: 10.5, Height: 8
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Text: 'G', X: 264.08205953240065, Y: 87.23523596202492, Width: 10.5, Height: 8
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Text: 'C', X: 249.9399239086697, Y: 73.09310033829397, Width: 10.5, Height: 8
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Text: 'G', X: 235.31329352894127, Y: 63.485138258258814, Width: 10.5, Height: 8
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Text: 'G', X: 233.52963757602078, Y: 46.07623757389058, Width: 10.5, Height: 8
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Text: 'C', X: 245.9040315328291, Y: 33.701843617082204, Width: 10.5, Height: 8
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Text: 'G', X: 263.3129322171974, Y: 35.48549957000273, Width: 10.5, Height: 8
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Text: 'G', X: 272.9208942972325, Y: 50.112129949731184, Width: 10.5, Height: 8
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Text: 'C', X: 287.06302992096346, Y: 64.25426557346208, Width: 10.5, Height: 8
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Text: 'C', X: 301.2051655446944, Y: 78.39640119719306, Width: 10.5, Height: 8
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Text: 'A', X: 315.9925068575001, Y: 87.79491280221302, Width: 10.5, Height: 8
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Text: 'G', X: 318.1644331229215, Y: 105.18112054825926, Width: 10.5, Height: 8
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Text: 'U', X: 324.9002540371379, Y: 124.01270881403244, Width: 10.5, Height: 8
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Text: 'G', X: 336.6362658381337, Y: 136.99408112233974, Width: 10.5, Height: 8
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Text: 'A', X: 335.79577149761144, Y: 154.4738857340495, Width: 10.5, Height: 8
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Text: 'G', X: 322.868396773787, Y: 166.2693502331621, Width: 10.5, Height: 8
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Text: 'C', X: 314.3568421881519, Y: 184.36778769432854, Width: 10.5, Height: 8
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Text: 'G', X: 313.5162865860949, Y: 201.84758936024716, Width: 10.5, Height: 8
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Text: 'G', X: 300.58887052273917, Y: 213.64300855266632, Width: 10.5, Height: 8
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Text: 'C', X: 292.0772525074914, Y: 231.74141618324282, Width: 10.5, Height: 8
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Text: 'C', X: 283.5656344922436, Y: 249.8398238138193, Width: 10.5, Height: 8
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Text: 'C', X: 279.75, Y: 266.91878553347897, Width: 10.5, Height: 8
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Text: 'C', X: 279.75, Y: 286.918785533479, Width: 10.5, Height: 8
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Text: 'G', X: 297.25, Y: 286.918785533479, Width: 10.5, Height: 8
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Text: 'A', X: 314.75, Y: 286.918785533479, Width: 10.5, Height: 8
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Text: 'U', X: 332.25, Y: 286.918785533479, Width: 10.5, Height: 8
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Text: 'C', X: 349.75, Y: 286.918785533479, Width: 10.5, Height: 8
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Text: 'U', X: 367.25, Y: 286.918785533479, Width: 10.5, Height: 8
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Text: 'G', X: 384.75, Y: 286.918785533479, Width: 10.5, Height: 8
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Text: 'A', X: 402.25, Y: 286.918785533479, Width: 10.5, Height: 8
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Text: 'C', X: 419.75, Y: 286.918785533479, Width: 10.5, Height: 8
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Text: 'A', X: 437.25, Y: 286.918785533479, Width: 10.5, Height: 8
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Text: 'G', X: 454.75, Y: 286.918785533479, Width: 10.5, Height: 8
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Text: 'A', X: 472.25, Y: 286.918785533479, Width: 10.5, Height: 8
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Text: '1', X: 5.5, Y: 306.91878553347897, Width: 9.0, Height: 8
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Text: '10', X: 121.0, Y: 266.91878553347897, Width: 18.0, Height: 8
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Text: '20', X: 191.09565531419997, Y: 106.37784386350518, Width: 18.0, Height: 8
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Text: '30', X: 346.8023711553789, Y: 8.0, Width: 18.0, Height: 8
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Text: '40', X: 419.0930725759897, Y: 118.55787187907126, Width: 18.0, Height: 8
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Text: '50', X: 272.45352172970297, Y: 143.49637897709036, Width: 18.0, Height: 8
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Text: '60', X: 193.5, Y: 266.91878553347897, Width: 18.0, Height: 8
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Text: '70', X: 249.33054303480753, Y: 191.30002712003412, Width: 18.0, Height: 8
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Text: '80', X: 210.93556788668627, Y: 39.375413927240515, Width: 18.0, Height: 8
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Text: '90', X: 350.1442238739895, Y: 162.98540860483914, Width: 18.0, Height: 8
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Text: '100', X: 306.5, Y: 306.918785533479, Width: 27.0, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_6.svg


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Text: '109', X: 464.0, Y: 306.918785533479, Width: 27.0, Height: 8
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Text: 'ATP13A3, -61.8 ± 2.0
 kcal/mol, AUC: 0.923', X: 172.5, Y: 319.71878553347904, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 491.0, 319.71878553347904)
Updated viewBox: -0.25 -5.0 496.25 329.71878553347904
Updated SVG: /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_final_3.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_final_3.svg
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Text: 'U', X: 177.25, Y: 178.3299337319171, Width: 10.5, Height: 8
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Text: 'C', X: 177.25, Y: 198.3299337319171, Width: 10.5, Height: 8
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Text: 'G', X: 177.25, Y: 318.3299337319171, Width: 10.5, Height: 8
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Text: 'C', X: 177.25, Y: 338.3299337319171, Width: 10.5, Height: 8
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Text: 'G', X: 229.75, Y: 338.3299337319171, Width: 10.5, Height: 8
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Text: 'G', X: 247.25, Y: 338.3299337319171, Width: 10.5, Height: 8
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Text: 'A', X: 243.43438113341733, Y: 301.25090207048214, Width: 10.5, Height: 8
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Text: 'G', X: 254.15572209255674, Y: 287.4195927374798, Width: 10.5, Height: 8
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Text: 'G', X: 262.66734010780453, Y: 269.3211851069033, Width: 10.5, Height: 8
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Text: 'C', X: 271.1789581230523, Y: 251.22277747632677, Width: 10.5, Height: 8
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Text: 'C', X: 279.6905761383001, Y: 233.12436984575027, Width: 10.5, Height: 8
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Text: 'G', X: 288.2021941535479, Y: 215.02596221517382, Width: 10.5, Height: 8
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Text: 'C', X: 296.7138121687957, Y: 196.92755458459737, Width: 10.5, Height: 8
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Text: 'G', X: 286.96730280666634, Y: 182.39299922504694, Width: 10.5, Height: 8
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Text: 'G', X: 283.21583661980463, Y: 165.29989401578945, Width: 10.5, Height: 8
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Text: 'A', X: 285.97986640007855, Y: 148.01961960767687, Width: 10.5, Height: 8
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Text: 'G', X: 294.8759295373259, Y: 132.949523227626, Width: 10.5, Height: 8
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Text: 'G', X: 308.6698470023903, Y: 122.18032710103876, Width: 10.5, Height: 8
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Text: 'A', X: 325.44794491474215, Y: 117.2060759323254, Width: 10.5, Height: 8
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Text: 'G', X: 342.88254458403424, Y: 118.71686334868582, Width: 10.5, Height: 8
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Text: 'G', X: 354.6157347946026, Y: 102.5201893851023, Width: 10.5, Height: 8
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Text: 'C', X: 366.3489250051709, Y: 86.32351542151878, Width: 10.5, Height: 8
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Text: 'G', X: 370.4300588522304, Y: 69.30612000149017, Width: 10.5, Height: 8
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Text: 'G', X: 385.32791025345415, Y: 60.12453931043922, Width: 10.5, Height: 8
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Text: 'C', X: 397.0610436994035, Y: 43.927824225597305, Width: 10.5, Height: 8
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Text: 'G', X: 398.7544699982669, Y: 26.509975357571307, Width: 10.5, Height: 8
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Text: 'C', X: 411.27382765334943, Y: 14.282349434147022, Width: 10.5, Height: 8
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Text: 'G', X: 428.72675668396823, Y: 13.0, Width: 10.5, Height: 8
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Text: 'G', X: 442.8988627578415, Y: 23.26647754831015, Width: 10.5, Height: 8
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Text: 'C', X: 447.1199034414223, Y: 40.249762488704505, Width: 10.5, Height: 8
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Text: 'G', X: 439.4032040277483, Y: 55.95650314289742, Width: 10.5, Height: 8
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Text: 'G', X: 423.3807057122716, Y: 62.99416607526496, Width: 10.5, Height: 8
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Text: 'C', X: 411.64757226632224, Y: 79.19088116010687, Width: 10.5, Height: 8
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Text: 'G', X: 407.5664509181484, Y: 96.20835595930902, Width: 10.5, Height: 8
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Text: 'G', X: 392.66852019599406, Y: 105.38994951369227, Width: 10.5, Height: 8
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Text: 'C', X: 380.93532998542577, Y: 121.5866234772758, Width: 10.5, Height: 8
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Text: 'C', X: 369.20213977485747, Y: 137.78329744085926, Width: 10.5, Height: 8
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Text: 'A', X: 376.07138279755065, Y: 153.87874711755921, Width: 10.5, Height: 8
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Text: 'G', X: 376.573930727211, Y: 171.3715297886609, Width: 10.5, Height: 8
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Text: 'U', X: 370.6400629835243, Y: 187.8347984070257, Width: 10.5, Height: 8
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Text: 'G', X: 359.09300990569005, Y: 200.9845347244459, Width: 10.5, Height: 8
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Text: 'A', X: 343.53474255754537, Y: 208.9964207148763, Width: 10.5, Height: 8
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Text: 'G', X: 326.12372456848254, Y: 210.75893385937502, Width: 10.5, Height: 8
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Text: 'C', X: 317.61210655323475, Y: 228.85734148995147, Width: 10.5, Height: 8
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Text: 'G', X: 309.10048853798696, Y: 246.95574912052797, Width: 10.5, Height: 8
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Text: 'G', X: 300.58887052273917, Y: 265.0541567511045, Width: 10.5, Height: 8
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Text: 'C', X: 292.0772525074914, Y: 283.1525643816809, Width: 10.5, Height: 8
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Text: 'C', X: 283.5656344922436, Y: 301.2509720122574, Width: 10.5, Height: 8
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Text: 'C', X: 279.75, Y: 318.32993373191715, Width: 10.5, Height: 8
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Text: 'C', X: 279.75, Y: 338.32993373191715, Width: 10.5, Height: 8
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Text: 'G', X: 297.25, Y: 338.32993373191715, Width: 10.5, Height: 8
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Text: 'A', X: 314.75, Y: 338.32993373191715, Width: 10.5, Height: 8
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Text: 'U', X: 332.25, Y: 338.32993373191715, Width: 10.5, Height: 8
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Text: 'C', X: 349.75, Y: 338.32993373191715, Width: 10.5, Height: 8
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Text: 'U', X: 367.25, Y: 338.32993373191715, Width: 10.5, Height: 8
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Text: 'G', X: 384.75, Y: 338.32993373191715, Width: 10.5, Height: 8
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Text: 'A', X: 402.25, Y: 338.32993373191715, Width: 10.5, Height: 8
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Text: 'C', X: 419.75, Y: 338.32993373191715, Width: 10.5, Height: 8
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Text: 'A', X: 437.25, Y: 338.32993373191715, Width: 10.5, Height: 8
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Text: 'G', X: 454.75, Y: 338.32993373191715, Width: 10.5, Height: 8
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Text: 'A', X: 472.25, Y: 338.32993373191715, Width: 10.5, Height: 8
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Text: '1', X: 5.5, Y: 358.3299337319171, Width: 9.0, Height: 8
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Text: '10', X: 121.0, Y: 318.3299337319171, Width: 18.0, Height: 8
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Text: '20', X: 139.3914313410542, Y: 118.82745218356791, Width: 18.0, Height: 8
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Text: '30', X: 299.23335625036884, Y: 113.54595976928658, Width: 18.0, Height: 8
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Text: '40', X: 196.8344630859885, Y: 156.89031491406618, Width: 18.0, Height: 8
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Text: '50', X: 191.0, Y: 358.3299337319171, Width: 18.0, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_9.svg


Warning: Font Verdana not found. Using default font.
Text: '60', X: 266.3537865229714, Y: 206.51434419992606, Width: 18.0, Height: 8
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Text: '70', X: 346.40224076125395, Y: 74.5903394020919, Width: 18.0, Height: 8
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Text: '80', X: 438.58174478476326, Y: 69.38620159400978, Width: 18.0, Height: 8
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Text: '90', X: 345.4695684288779, Y: 228.17147625097914, Width: 18.0, Height: 8
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Text: '100', X: 306.5, Y: 358.32993373191715, Width: 27.0, Height: 8
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Text: '109', X: 464.0, Y: 358.32993373191715, Width: 27.0, Height: 8
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Text: 'ATP13A3, -60.8 ± 1.5
 kcal/mol, AUC: 0.888', X: 172.5, Y: 371.12993373191716, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 491.0, 371.12993373191716)
Updated viewBox: -0.25 0.0 496.25 376.12993373191716
Updated SVG: /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_final_6.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_final_6.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGACAGCGGCGGCCGGGUCCCCCGCGGUCCCUGGGGCUGGUCCGGCCGCGAGGGAGGCCGCGGAGGAGGCGGCGCGGCGGCGGCCAGUGAGCGGCCCCGAUCUGACAGA', '-structureDBN', '.(((.((((.((......)).)))).)))..((((((((.((.((((((.......(((((.......)))))......))))))...)).))))))))..........', '-o', '/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_9.svg', '-title', 'ATP13A3, -60.1 ± 1.5\n kcal/mol, AUC: 0.761', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,8,9,11,12,15,16,17,18,24,26,27,28,32,33,34,35,36,38,39,40,41,44,45,48,50,52,53,54,56,57,60,62,63,65,66,68,69,71,72,74,76,77,79,80,82,83,87,88,89,91,93,94,99,101,103,104,108', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '13,14,19,20,84,22,23,85,29,95,96,97,43,46,47,58,59', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,98,37,70,42,75,78,49,21,92', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,3,4,5,67,7,73,10,81,86,25,90,30,31,100,102,105,106,107,109,51,55,61']
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Text: 'G', X: 102.68466383732772, Y: 531.5840777690776, Width: 10.5, Height: 8
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Text: 'C', X: 102.68466383732772, Y: 491.58407776907757, Width: 10.5, Height: 8
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Text: 'C', X: 102.68466383732772, Y: 439.23300490891205, Width: 10.5, Height: 8
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Text: 'G', X: 102.68466383732769, Y: 399.23300490891205, Width: 10.5, Height: 8
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Text: 'C', X: 96.00628668583843, Y: 383.0574684788293, Width: 10.5, Height: 8
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Text: 'G', X: 102.68466383732766, Y: 346.88193204874653, Width: 10.5, Height: 8
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Text: 'C', X: 93.83776374582482, Y: 331.78287543616176, Width: 10.5, Height: 8
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Text: 'C', X: 135.18466383732766, Y: 346.88193204874653, Width: 10.5, Height: 8
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Text: 'C', X: 135.18466383732766, Y: 366.88193204874653, Width: 10.5, Height: 8
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Text: 'C', X: 141.86304098881695, Y: 383.0574684788293, Width: 10.5, Height: 8
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Text: 'C', X: 135.1846638373277, Y: 419.23300490891205, Width: 10.5, Height: 8
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Text: 'G', X: 135.18466383732772, Y: 491.58407776907757, Width: 10.5, Height: 8
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Text: 'U', X: 135.18466383732772, Y: 511.58407776907757, Width: 10.5, Height: 8
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Text: 'C', X: 135.18466383732772, Y: 531.5840777690776, Width: 10.5, Height: 8
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Text: 'C', X: 152.68466383732772, Y: 531.5840777690776, Width: 10.5, Height: 8
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Text: 'C', X: 170.18466383732772, Y: 531.5840777690776, Width: 10.5, Height: 8
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Text: 'U', X: 187.68466383732772, Y: 531.5840777690776, Width: 10.5, Height: 8
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Text: 'G', X: 187.68466383732772, Y: 511.58407776907757, Width: 10.5, Height: 8
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Text: 'G', X: 187.68466383732772, Y: 491.58407776907757, Width: 10.5, Height: 8
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Text: 'U', X: 187.68466383732772, Y: 359.23300490891205, Width: 10.5, Height: 8
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Text: 'C', X: 153.58001653529865, Y: 275.43910948981915, Width: 10.5, Height: 8
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Text: 'C', X: 141.71753222723072, Y: 259.3368902005149, Width: 10.5, Height: 8
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Text: 'C', X: 117.99256361109491, Y: 227.13245162190623, Width: 10.5, Height: 8
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Text: 'C', X: 46.4472953743371, Y: 104.36399018811488, Width: 10.5, Height: 8
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Text: 'G', X: 12.76686768873003, Y: 60.835324855143824, Width: 10.5, Height: 8
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Text: 'G', X: 4.75, Y: 45.27961770664433, Width: 10.5, Height: 8
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Text: 'A', X: 52.68723172030383, Y: 21.08203820898575, Width: 10.5, Height: 8
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Text: 'G', X: 60.4415632801344, Y: 36.770267378930384, Width: 10.5, Height: 8
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Text: 'G', X: 57.43567869789558, Y: 54.01018763126194, Width: 10.5, Height: 8
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Text: 'C', X: 66.44810787553612, Y: 71.8644902028554, Width: 10.5, Height: 8
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Text: 'G', X: 75.46053705317667, Y: 89.7187927744489, Width: 10.5, Height: 8
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Text: 'G', X: 84.47296623081724, Y: 107.57309534604252, Width: 10.5, Height: 8
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Text: 'C', X: 93.48539540845778, Y: 125.42739791763614, Width: 10.5, Height: 8
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Text: 'G', X: 110.98349054267027, Y: 125.68559682167887, Width: 10.5, Height: 8
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Text: 'C', X: 127.42429597455481, Y: 131.68142176499708, Width: 10.5, Height: 8
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Text: 'G', X: 140.98049527975826, Y: 142.74846565203387, Width: 10.5, Height: 8
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Text: 'G', X: 150.1453821265968, Y: 157.6566798001017, Width: 10.5, Height: 8
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Text: 'C', X: 153.90032343581217, Y: 174.74908793249614, Width: 10.5, Height: 8
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Text: 'G', X: 151.8279755465212, Y: 192.12595111966988, Width: 10.5, Height: 8
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Text: 'G', X: 144.15866995621434, Y: 207.855914621296, Width: 10.5, Height: 8
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Text: 'C', X: 156.02115426428225, Y: 223.95813391060022, Width: 10.5, Height: 8
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Text: 'G', X: 167.88363857235015, Y: 240.06035319990445, Width: 10.5, Height: 8
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Text: 'G', X: 179.74612288041808, Y: 256.1625724892088, Width: 10.5, Height: 8
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Text: 'C', X: 191.60860718848602, Y: 272.26479177851303, Width: 10.5, Height: 8
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Text: 'C', X: 203.47109149655392, Y: 288.36701106781726, Width: 10.5, Height: 8
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Text: 'A', X: 220.18467290426582, Y: 293.554129393804, Width: 10.5, Height: 8
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Text: 'G', X: 230.56434947048095, Y: 307.64356921165216, Width: 10.5, Height: 8
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Text: 'U', X: 230.56434599685306, Y: 325.1435692116518, Width: 10.5, Height: 8
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Text: 'G', X: 220.18466383732772, Y: 339.23300490891205, Width: 10.5, Height: 8
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Text: 'A', X: 220.18466383732772, Y: 359.23300490891205, Width: 10.5, Height: 8
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Text: 'G', X: 226.86304098881698, Y: 375.4085413389948, Width: 10.5, Height: 8
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Text: 'C', X: 220.18466383732772, Y: 391.58407776907757, Width: 10.5, Height: 8
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Text: 'G', X: 220.18466383732772, Y: 411.58407776907757, Width: 10.5, Height: 8
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Text: 'G', X: 220.18466383732772, Y: 431.58407776907757, Width: 10.5, Height: 8
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Text: 'C', X: 220.18466383732772, Y: 451.58407776907757, Width: 10.5, Height: 8
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Text: 'C', X: 220.18466383732772, Y: 471.58407776907757, Width: 10.5, Height: 8
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Text: 'C', X: 220.18466383732772, Y: 491.58407776907757, Width: 10.5, Height: 8
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Text: 'C', X: 220.18466383732772, Y: 511.58407776907757, Width: 10.5, Height: 8
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Text: 'G', X: 220.18466383732772, Y: 531.5840777690776, Width: 10.5, Height: 8
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Text: 'A', X: 237.68466383732772, Y: 531.5840777690776, Width: 10.5, Height: 8
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Text: 'U', X: 255.18466383732772, Y: 531.5840777690776, Width: 10.5, Height: 8
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Text: 'C', X: 272.6846638373277, Y: 531.5840777690776, Width: 10.5, Height: 8
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Text: 'U', X: 290.1846638373277, Y: 531.5840777690776, Width: 10.5, Height: 8
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Text: 'G', X: 307.6846638373277, Y: 531.5840777690776, Width: 10.5, Height: 8
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Text: 'A', X: 325.1846638373277, Y: 531.5840777690776, Width: 10.5, Height: 8
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Text: 'C', X: 342.6846638373277, Y: 531.5840777690776, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_8.svg


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Text: 'A', X: 360.1846638373277, Y: 531.5840777690776, Width: 10.5, Height: 8
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Text: 'G', X: 377.6846638373277, Y: 531.5840777690776, Width: 10.5, Height: 8
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Text: 'A', X: 395.1846638373277, Y: 531.5840777690776, Width: 10.5, Height: 8
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Text: '1', X: 85.93466383732772, Y: 551.5840777690776, Width: 9.0, Height: 8
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Text: '10', X: 72.25628668583843, Y: 383.0574684788293, Width: 18.0, Height: 8
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Text: '20', X: 151.43466383732766, Y: 366.88193204874653, Width: 18.0, Height: 8
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Text: '30', X: 148.93466383732772, Y: 551.5840777690776, Width: 18.0, Height: 8
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Text: '40', X: 157.25628668583846, Y: 375.4085413389948, Width: 18.0, Height: 8
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Text: '50', X: 96.6511534267621, Y: 249.79245751118356, Width: 18.0, Height: 8
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Text: '60', X: 15.830563625102997, Y: 95.52211679416189, Width: 18.0, Height: 8
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Text: '70', X: 80.55241044712974, Y: 62.85206102521488, Width: 18.0, Height: 8
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Text: '80', X: 160.10535348415726, Y: 204.38594949177923, Width: 18.0, Height: 8
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Text: '90', X: 236.43466383732772, Y: 359.23300490891205, Width: 18.0, Height: 8
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Text: '100', X: 229.43466383732772, Y: 551.5840777690776, Width: 27.0, Height: 8
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Text: '109', X: 386.9346638373277, Y: 551.5840777690776, Width: 27.0, Height: 8
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Text: 'ATP13A3, -60.1 ± 1.5
 kcal/mol, AUC: 0.761', X: 133.96733191866386, Y: 564.3840777690775, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 413.9346638373277, 564.3840777690775)
Updated viewBox: -0.25 0.0 419.1846638373277 569.3840777690775
Updated SVG: /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_final_9.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_final_9.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGACAGCGGCGGCCGGGUCCCCCGCGGUCCCUGGGGCUGGUCCGGCCGCGAGGGAGGCCGCGGAGGAGGCGGCGCGGCGGCGGCCAGUGAGCGGCCCCGAUCUGACAGA', '-structureDBN', '.....((.((.((((.(((((((((((((((((.(((((...))))).)..))).))))))))....)).))).)))).)).))(((....((....))..))).....', '-o', '/disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_8.svg', '-title', 'ATP13A3, -59.4 ± 2.4\n kcal/mol, AUC: 0.801', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,8,9,11,12,15,16,17,18,24,26,27,28,32,33,34,35,36,38,39,40,41,44,45,48,50,52,53,54,56,57,60,62,63,65,66,68,69,71,72,74,76,77,79,80,82,83,87,88,89,91,93,94,99,101,103,104,108', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '13,14,19,20,84,22,23,85,29,95,96,97,43,46,47,58,59', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,98,37,70,42,75,78,49,21,92', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,3,4,5,67,7,73,10,81,86,25,90,30,31,100,102,105,106,107,109,51,55,61']
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Text: 'C', X: 313.9537536540787, Y: 271.7132448242779, Width: 10.5, Height: 8
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Text: 'G', X: 307.27537650258944, Y: 255.53770839419514, Width: 10.5, Height: 8
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Text: 'G', X: 313.9537536540787, Y: 239.3621719641124, Width: 10.5, Height: 8
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Text: 'C', X: 310.13815041340075, Y: 89.93199750079106, Width: 10.5, Height: 8
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Text: 'C', X: 301.62665856783156, Y: 71.83353053359156, Width: 10.5, Height: 8
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Text: 'C', X: 283.77233621137805, Y: 60.5, Width: 10.5, Height: 8
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Text: 'C', X: 263.77233621137805, Y: 60.5, Width: 10.5, Height: 8
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Text: 'C', X: 108.59476764102277, Y: 72.82709508624714, Width: 10.5, Height: 8
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Text: 'G', X: 78.70093679480993, Y: 94.26585236922693, Width: 10.5, Height: 8
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Text: 'G', X: 79.46122910745277, Y: 111.74925466850954, Width: 10.5, Height: 8
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Text: 'G', X: 67.66588312448215, Y: 124.67663698285463, Width: 10.5, Height: 8
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Text: 'G', X: 60.84384055799018, Y: 143.47716184842614, Width: 10.5, Height: 8
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Text: 'C', X: 54.021797991498204, Y: 162.27768671399764, Width: 10.5, Height: 8
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Text: 'U', X: 47.19975542500623, Y: 181.07821157956909, Width: 10.5, Height: 8
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Text: 'G', X: 40.37771285851426, Y: 199.87873644514053, Width: 10.5, Height: 8
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Text: 'G', X: 33.533225418145435, Y: 215.9847534441085, Width: 10.5, Height: 8
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Text: 'U', X: 16.250063375453067, Y: 218.73122421556195, Width: 10.5, Height: 8
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Text: 'C', X: 4.75, Y: 205.54034349238913, Width: 10.5, Height: 8
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Text: 'C', X: 9.826859951960557, Y: 188.79291727459116, Width: 10.5, Height: 8
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Text: 'G', X: 16.64890251845253, Y: 169.99239240901966, Width: 10.5, Height: 8
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Text: 'G', X: 23.470945084944503, Y: 151.19186754344815, Width: 10.5, Height: 8
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Text: 'C', X: 30.292987651436476, Y: 132.3913426778767, Width: 10.5, Height: 8
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Text: 'C', X: 37.11503021792845, Y: 113.59081781230526, Width: 10.5, Height: 8
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Text: 'G', X: 36.35470404114443, Y: 96.10734263987746, Width: 10.5, Height: 8
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Text: 'C', X: 48.1501227409579, Y: 83.17992612705132, Width: 10.5, Height: 8
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Text: 'G', X: 47.3898578385826, Y: 65.69644829001277, Width: 10.5, Height: 8
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Text: 'A', X: 59.185321845091096, Y: 52.7690731167163, Width: 10.5, Height: 8
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Text: 'G', X: 76.6651264247734, Y: 51.928578110117314, Width: 10.5, Height: 8
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Text: 'G', X: 112.86206035917229, Y: 34.90559441897892, Width: 10.5, Height: 8
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Text: 'A', X: 126.69337449171837, Y: 24.18436550775641, Width: 10.5, Height: 8
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Text: 'G', X: 143.7723362113781, Y: 28.0, Width: 10.5, Height: 8
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Text: 'G', X: 163.7723362113781, Y: 28.0, Width: 10.5, Height: 8
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Text: 'C', X: 183.7723362113781, Y: 28.0, Width: 10.5, Height: 8
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Text: 'C', X: 203.77233621137805, Y: 28.0, Width: 10.5, Height: 8
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Text: 'G', X: 223.77233621137808, Y: 28.0, Width: 10.5, Height: 8
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Text: 'C', X: 243.77233621137805, Y: 28.0, Width: 10.5, Height: 8
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Text: 'G', X: 263.77233621137805, Y: 28.0, Width: 10.5, Height: 8
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Text: 'G', X: 283.77233621137805, Y: 28.0, Width: 10.5, Height: 8
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Text: 'A', X: 297.12669224647095, Y: 17.87319716211414, Width: 10.5, Height: 8
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Text: 'G', X: 313.8719938444759, Y: 17.176178352260877, Width: 10.5, Height: 8
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Text: 'G', X: 328.0217467921271, Y: 26.158129830078565, Width: 10.5, Height: 8
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Text: 'A', X: 334.5173730969956, Y: 41.60797771725652, Width: 10.5, Height: 8
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Text: 'G', X: 331.03666738953063, Y: 58.002356284541634, Width: 10.5, Height: 8
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Text: 'G', X: 339.54815923509983, Y: 76.10082325174108, Width: 10.5, Height: 8
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Text: 'C', X: 350.2693881463223, Y: 89.93213738428716, Width: 10.5, Height: 8
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Text: 'G', X: 346.4537536540787, Y: 107.01109910394683, Width: 10.5, Height: 8
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Text: 'G', X: 346.4537536540787, Y: 127.01109910394683, Width: 10.5, Height: 8
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Text: 'C', X: 346.4537536540787, Y: 147.01109910394683, Width: 10.5, Height: 8
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Text: 'G', X: 353.13213080556795, Y: 163.18663553402962, Width: 10.5, Height: 8
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Text: 'C', X: 346.4537536540787, Y: 179.3621719641124, Width: 10.5, Height: 8
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Text: 'G', X: 346.4537536540787, Y: 199.3621719641124, Width: 10.5, Height: 8
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Text: 'G', X: 346.4537536540787, Y: 219.3621719641124, Width: 10.5, Height: 8
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Text: 'C', X: 346.4537536540787, Y: 239.36217196411235, Width: 10.5, Height: 8
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Text: 'G', X: 353.13213080556795, Y: 255.53770839419514, Width: 10.5, Height: 8
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'C', X: 346.4537536540787, Y: 344.0643176844434, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 363.9537536540787, Y: 344.0643176844434, Width: 10.5, Height: 8
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'G', X: 396.6811635987648, Y: 207.77598100716688, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 413.08048107863436, Y: 201.66749201306766, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 428.1713562900903, Y: 210.528459056729, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 430.8274058216292, Y: 227.8257609412022, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 419.09034527729966, Y: 240.806233250611, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'A', X: 413.9537536540787, Y: 344.0643176844434, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'ATP13A3, -59.4 ± 2.4
 kcal/mol, AUC: 0.801', X: 178.35187682703935, Y: 376.86431768444345, Width: 142.5, Height: 23
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Updated SVG: /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_final_8.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/7488798e-96e1-48b4-840a-54a548321606/final_image/ATP13A3_fold_final_8.svg
