Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 97% [================================================= ] -                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/7bdc88a8-412d-4aa3-8776-0dfb922532ed/final_image/MYH10_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 158.39 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 158.39 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 158.39 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.04 MB
Based on canonical annotations, the following gene is in your area of interest: MYH10(-)
write fasta - Elapsed time since the previous call: 0.58 seconds
write fasta - Current memory usage: 172.04 MB
Length of region: 87 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.19 seconds
write dat - Current memory usage: 175.18 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/7bdc88a8-412d-4aa3-8776-0dfb922532ed/fasta/MYH10.fasta" "/disk1/www/rails/humanrnamap/public/result/7bdc88a8-412d-4aa3-8776-0dfb922532ed/ct/MYH10.ct" --SHAPE "MYH10.dat"

fold - Elapsed time since the previous call: 0.09 seconds
fold - Current memory usage: 175.18 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/7bdc88a8-412d-4aa3-8776-0dfb922532ed/ct/MYH10.ct" "/disk1/www/rails/humanrnamap/public/result/7bdc88a8-412d-4aa3-8776-0dfb922532ed/fold_FE/MYH10.txt" -sh "MYH10.dat"

efn2 - Elapsed time since the previous call: 0.41 seconds
efn2 - Current memory usage: 175.18 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/7bdc88a8-412d-4aa3-8776-0dfb922532ed/ct/MYH10.ct" 1 "/disk1/www/rails/humanrnamap/public/result/7bdc88a8-412d-4aa3-8776-0dfb922532ed/fold_dbn/MYH10_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.18 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CAGAGAGAAAGAAACCAAAGCCCUGUCACUGGCCCGGGCCCUCGAGGAAGCCCUGGAGGCCAAGGAGGAGUUUGAGAGGCAGAACAA', '-structureDBN', '...................(((.(.(((((..((..((((.((.(((....))).))))))..))...))..))).)))).......', '-o', '/disk1/www/rails/humanrnamap/public/result/7bdc88a8-412d-4aa3-8776-0dfb922532ed/final_image/MYH10_fold_1.svg', '-title', 'MYH10, -27.3 ± 1.3\n kcal/mol, AUC: 0.637', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,5,7,11,20,24,25,26,30,31,32,36,37,38,42,44,46,47,50,54,55,56,58,59,64,65,67,68,70,71,72,73,74,76,78,79,82', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '33,34,51,21,39,40', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,69,41,9,12,48,52,22,60,61', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '2,4,6,8,10,13,14,15,16,17,18,19,23,27,28,29,35,43,45,49,53,57,62,63,66,75,77,80,81,83,84,85,86,87']
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Text: 'MYH10, -27.3 ± 1.3
 kcal/mol, AUC: 0.637', X: 182.5, Y: 530.1303708710739, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 506.5, 530.1303708710739)
Updated viewBox: -0.25 -5.0 511.75 540.1303708710739
Updated SVG: /disk1/www/rails/humanrnamap/public/result/7bdc88a8-412d-4aa3-8776-0dfb922532ed/final_image/MYH10_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/7bdc88a8-412d-4aa3-8776-0dfb922532ed/final_image/MYH10_fold_final_1.svg
