Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_3.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 158.34 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 158.34 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 158.34 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 171.94 MB
Based on canonical annotations, the following gene is in your area of interest: TNRC18(-)
write fasta - Elapsed time since the previous call: 0.84 seconds
write fasta - Current memory usage: 171.94 MB
Length of region: 105 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.19 seconds
write dat - Current memory usage: 175.56 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/fasta/TNRC18.fasta" "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/ct/TNRC18.ct" --SHAPE "TNRC18.dat"

fold - Elapsed time since the previous call: 0.13 seconds
fold - Current memory usage: 175.56 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/ct/TNRC18.ct" "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/fold_FE/TNRC18.txt" -sh "TNRC18.dat"

efn2 - Elapsed time since the previous call: 0.55 seconds
efn2 - Current memory usage: 175.56 MB
This region has 10 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/ct/TNRC18.ct" 1 "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/fold_dbn/TNRC18_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 175.56 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/ct/TNRC18.ct" 2 "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/fold_dbn/TNRC18_temp2.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.56 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/ct/TNRC18.ct" 3 "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/fold_dbn/TNRC18_temp3.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.56 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/ct/TNRC18.ct" 4 "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/fold_dbn/TNRC18_temp4.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.56 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/ct/TNRC18.ct" 5 "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/fold_dbn/TNRC18_temp5.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.56 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/ct/TNRC18.ct" 6 "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/fold_dbn/TNRC18_temp6.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.56 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/ct/TNRC18.ct" 7 "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/fold_dbn/TNRC18_temp7.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.56 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/ct/TNRC18.ct" 8 "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/fold_dbn/TNRC18_temp8.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 175.56 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/ct/TNRC18.ct" 9 "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/fold_dbn/TNRC18_temp9.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.56 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/ct/TNRC18.ct" 10 "/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/fold_dbn/TNRC18_temp10.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.56 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGCCCUGGAGCUGGACUUCCGGAUGCGGCUGGCCGAGGUGCAGCGCCAGUACAAGGAGAAGCAGCGUGAGCUGGUGAAGCUGCAGCGCCGCCGGGACUCCGAGGA', '-structureDBN', '..((.(((((((((....))))...((((.(((.(...((((((((((((...................))))))...)))))).))))))))...))))).)).', '-o', '/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_3.svg', '-title', 'TNRC18, -46.7 ± 1.1\n kcal/mol, AUC: 0.858', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,7,8,10,12,13,14,17,18,21,22,24,25,27,28,30,31,32,35,37,38,39,40,43,45,49,50,55,56,58,61,64,66,67,68,70,72,73,74,75,76,79,81,82,85,87,90,93,94,95,98,101,103,104', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '3,4,5,71,11,16,19,20,88,89,91,92,29,33,99,100,44,46,47,48,62,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,34,65,97,9,41,15,80,86,23,26', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '69,77,78,83,84,96,36,102,105,42,51,52,53,54,57,59,60']
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Text: 'G', X: 442.9605724125895, Y: 145.43913421012036, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_6.svg


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Text: 'G', X: 247.08670711248044, Y: 82.5424197507167, Width: 10.5, Height: 8
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Text: 'G', X: 168.40179235018368, Y: 196.6489795214854, Width: 10.5, Height: 8
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Text: 'C', X: 145.40164241081672, Y: 221.96234953694074, Width: 10.5, Height: 8
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Text: 'U', X: 145.40164241081672, Y: 241.96234953694074, Width: 10.5, Height: 8
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Text: 'C', X: 145.40164241081672, Y: 261.96234953694074, Width: 10.5, Height: 8
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Text: 'C', X: 145.40164241081675, Y: 281.96234953694074, Width: 10.5, Height: 8
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Text: 'G', X: 145.40164241081675, Y: 301.9623495369407, Width: 10.5, Height: 8
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Text: 'A', X: 152.080019562306, Y: 318.13788596702346, Width: 10.5, Height: 8
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Text: 'G', X: 145.40164241081675, Y: 334.31342239710625, Width: 10.5, Height: 8
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Text: 'G', X: 145.40164241081675, Y: 354.31342239710625, Width: 10.5, Height: 8
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Text: 'A', X: 162.90164241081675, Y: 354.31342239710625, Width: 10.5, Height: 8
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Text: '1', X: 78.65164241081675, Y: 374.31342239710625, Width: 9.0, Height: 8
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Text: '10', X: 89.15164241081669, Y: 221.96234953694074, Width: 18.0, Height: 8
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Text: '40', X: 337.78515648095936, Y: 58.42926033458241, Width: 18.0, Height: 8
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Text: '50', X: 483.11776947057973, Y: 71.2080344163964, Width: 18.0, Height: 8
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Text: '60', X: 633.6793494047932, Y: 41.160448426189475, Width: 18.0, Height: 8
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Text: '70', X: 510.53403337477585, Y: 132.84947675560892, Width: 18.0, Height: 8
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Text: '80', X: 343.0902341320961, Y: 152.3872623946274, Width: 18.0, Height: 8
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Text: '90', X: 211.72940583829026, Y: 125.43753162638131, Width: 18.0, Height: 8
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Text: '100', X: 157.15164241081675, Y: 281.96234953694074, Width: 27.0, Height: 8
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Text: '105', X: 154.65164241081675, Y: 374.31342239710625, Width: 27.0, Height: 8
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Text: 'TNRC18, -46.7 ± 1.1
 kcal/mol, AUC: 0.858', X: 248.32759395280976, Y: 387.11342239710626, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 651.6793494047932, 387.11342239710626)
Updated viewBox: -0.25 0.0 656.9293494047932 392.11342239710626
Updated SVG: /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_final_3.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_final_3.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGCCCUGGAGCUGGACUUCCGGAUGCGGCUGGCCGAGGUGCAGCGCCAGUACAAGGAGAAGCAGCGUGAGCUGGUGAAGCUGCAGCGCCGCCGGGACUCCGAGGA', '-structureDBN', '(((.((((.((((.(((((.((..........))))))).)))).))))...........(((((.............))))).)))((..(((....))).)).', '-o', '/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_6.svg', '-title', 'TNRC18, -44.4 ± 1.2\n kcal/mol, AUC: 0.818', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,7,8,10,12,13,14,17,18,21,22,24,25,27,28,30,31,32,35,37,38,39,40,43,45,49,50,55,56,58,61,64,66,67,68,70,72,73,74,75,76,79,81,82,85,87,90,93,94,95,98,101,103,104', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '3,4,5,71,11,16,19,20,88,89,91,92,29,33,99,100,44,46,47,48,62,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,34,65,97,9,41,15,80,86,23,26', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '69,77,78,83,84,96,36,102,105,42,51,52,53,54,57,59,60']
Warning: Font Verdana not found. Using default font.
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Text: 'C', X: 391.6116314046338, Y: 131.63715772229241, Width: 10.5, Height: 8
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Text: 'G', X: 326.2203228310957, Y: 130.37982936216736, Width: 10.5, Height: 8
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Text: 'G', X: 308.1689024643355, Y: 138.99064945914495, Width: 10.5, Height: 8
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Text: 'G', X: 278.9698374989437, Y: 152.91913952340906, Width: 10.5, Height: 8
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Text: 'C', X: 260.9184473106694, Y: 161.53002288521765, Width: 10.5, Height: 8
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Text: 'U', X: 242.86705712239507, Y: 170.14090624702624, Width: 10.5, Height: 8
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Text: 'G', X: 224.8156669341207, Y: 178.75178960883483, Width: 10.5, Height: 8
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Text: 'G', X: 213.09149355275144, Y: 191.74375477515272, Width: 10.5, Height: 8
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Text: 'A', X: 195.61665078414217, Y: 192.68038200709117, Width: 10.5, Height: 8
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Text: 'C', X: 177.56529077457537, Y: 201.29132863362503, Width: 10.5, Height: 8
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Text: 'U', X: 159.5139307650087, Y: 209.9022752601589, Width: 10.5, Height: 8
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Text: 'U', X: 141.4625707554419, Y: 218.51322188669275, Width: 10.5, Height: 8
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Text: 'C', X: 123.41121074587522, Y: 227.1241685132266, Width: 10.5, Height: 8
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Text: 'C', X: 109.58394495852497, Y: 237.93390022213123, Width: 10.5, Height: 8
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Text: 'G', X: 92.4497961851273, Y: 234.13067467220645, Width: 10.5, Height: 8
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Text: 'G', X: 72.4497961851273, Y: 234.13067467220645, Width: 10.5, Height: 8
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Text: 'A', X: 61.076096391844544, Y: 247.43060195474433, Width: 10.5, Height: 8
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Text: 'U', X: 44.80178891562707, Y: 253.8645765333423, Width: 10.5, Height: 8
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Text: 'G', X: 27.408224023523076, Y: 251.93765851415125, Width: 10.5, Height: 8
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Text: 'C', X: 12.936812469618303, Y: 242.09756906608095, Width: 10.5, Height: 8
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Text: 'G', X: 4.750000000000114, Y: 226.63066199660463, Width: 10.5, Height: 8
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Text: 'G', X: 4.75, Y: 209.1306873478083, Width: 10.5, Height: 8
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Text: 'C', X: 12.936812469618303, Y: 193.66378027833196, Width: 10.5, Height: 8
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Text: 'U', X: 27.408224023523076, Y: 183.82369083026163, Width: 10.5, Height: 8
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Text: 'G', X: 44.80178891562707, Y: 181.89677281107055, Width: 10.5, Height: 8
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Text: 'G', X: 61.076096391844544, Y: 188.33074738966855, Width: 10.5, Height: 8
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Text: 'C', X: 72.4497961851273, Y: 201.63067467220645, Width: 10.5, Height: 8
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Text: 'C', X: 92.4497961851273, Y: 201.63067467220645, Width: 10.5, Height: 8
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Text: 'G', X: 109.41842247775764, Y: 197.79070849768067, Width: 10.5, Height: 8
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Text: 'A', X: 127.46978248732444, Y: 189.1797618711468, Width: 10.5, Height: 8
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Text: 'G', X: 145.52114249689112, Y: 180.56881524461295, Width: 10.5, Height: 8
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Text: 'G', X: 163.5725025064579, Y: 171.9578686180791, Width: 10.5, Height: 8
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Text: 'U', X: 181.6238625160246, Y: 163.34692199154523, Width: 10.5, Height: 8
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Text: 'G', X: 193.34806289214396, Y: 150.35488113798397, Width: 10.5, Height: 8
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Text: 'C', X: 210.82298147118172, Y: 149.418280552889, Width: 10.5, Height: 8
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Text: 'A', X: 228.87437165945607, Y: 140.80739719108038, Width: 10.5, Height: 8
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Text: 'G', X: 246.92576184773043, Y: 132.1965138292718, Width: 10.5, Height: 8
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Text: 'C', X: 264.9771520360048, Y: 123.5856304674632, Width: 10.5, Height: 8
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Text: 'G', X: 276.7013979453087, Y: 110.5936307038329, Width: 10.5, Height: 8
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Text: 'C', X: 294.1763198067469, Y: 109.65709136315951, Width: 10.5, Height: 8
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Text: 'C', X: 312.2277401735072, Y: 101.04627126618192, Width: 10.5, Height: 8
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Text: 'A', X: 330.2791605402674, Y: 92.43545116920438, Width: 10.5, Height: 8
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Text: 'G', X: 348.33058090702764, Y: 83.8246310722268, Width: 10.5, Height: 8
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Text: 'U', X: 347.8487112600824, Y: 66.33126656898287, Width: 10.5, Height: 8
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Text: 'A', X: 352.3994648369205, Y: 49.43331870887596, Width: 10.5, Height: 8
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Text: 'C', X: 361.6012200120431, Y: 34.54783243206569, Width: 10.5, Height: 8
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Text: 'A', X: 374.6823268360333, Y: 22.92308967106854, Width: 10.5, Height: 8
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Text: 'A', X: 390.54581682549406, Y: 15.533929681307882, Width: 10.5, Height: 8
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Text: 'G', X: 407.8613936385889, Y: 13.0, Width: 10.5, Height: 8
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Text: 'G', X: 425.17699039050547, Y: 15.533793425876524, Width: 10.5, Height: 8
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Text: 'A', X: 441.040538524382, Y: 22.922828586449526, Width: 10.5, Height: 8
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Text: 'G', X: 454.1217368224497, Y: 34.547468412553, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 463.32360913038707, Y: 49.43288228078035, Width: 10.5, Height: 8
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Text: 'A', X: 467.8744956761372, Y: 66.33079433072629, Width: 10.5, Height: 8
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Text: 'G', X: 467.39276368356155, Y: 83.8241626252352, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 485.4442518078483, Y: 92.43484067627952, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 503.49573993213494, Y: 101.04551872732384, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 521.5472280564217, Y: 109.65619677836816, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 539.5987161807084, Y: 118.26687482941247, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 554.4760982491521, Y: 109.05206591782229, Width: 10.5, Height: 8
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Text: 'U', X: 571.7550566693288, Y: 106.2795586768255, Width: 10.5, Height: 8
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Text: 'G', X: 588.7685133613401, Y: 110.37730096699386, Width: 10.5, Height: 8
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Text: 'A', X: 602.8903715256484, Y: 120.71278946414446, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_5.svg


Warning: Font Verdana not found. Using default font.
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Text: 'C', X: 614.5230114472162, Y: 152.99912822556666, Width: 10.5, Height: 8
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Text: 'U', X: 610.2382475360552, Y: 169.9664497205224, Width: 10.5, Height: 8
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Text: 'G', X: 599.7479435964256, Y: 183.97368798299823, Width: 10.5, Height: 8
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Text: 'G', X: 584.6713210540928, Y: 192.85876835424972, Width: 10.5, Height: 8
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Text: 'U', X: 567.3355184161212, Y: 195.25024224808024, Width: 10.5, Height: 8
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Text: 'G', X: 550.4163879005005, Y: 190.7789758633785, Width: 10.5, Height: 8
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Text: 'A', X: 536.5254666746825, Y: 180.13512749985415, Width: 10.5, Height: 8
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Text: 'A', X: 527.8068753858772, Y: 164.96161879466865, Width: 10.5, Height: 8
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Text: 'G', X: 525.6063643477613, Y: 147.60054303137835, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 507.5548762234746, Y: 138.98986498033403, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 489.503388099188, Y: 130.37918692928972, Width: 10.5, Height: 8
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Text: 'G', X: 471.45189997490127, Y: 121.76850887824543, Width: 10.5, Height: 8
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Text: 'C', X: 453.40041185061455, Y: 113.15783082720111, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 440.1080998604867, Y: 124.54046856882769, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 424.1116314046338, Y: 131.63715772229241, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 424.1116314046338, Y: 151.63715772229241, Width: 10.5, Height: 8
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Text: 'G', X: 424.1116314046338, Y: 171.63715772229241, Width: 10.5, Height: 8
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Text: 'C', X: 441.6116314046338, Y: 171.63715772229241, Width: 10.5, Height: 8
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Text: 'C', X: 441.6116314046338, Y: 151.63715772229241, Width: 10.5, Height: 8
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Text: 'G', X: 432.8144963768884, Y: 136.5090812645288, Width: 10.5, Height: 8
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Text: 'C', X: 435.87119779240516, Y: 119.27815388192096, Width: 10.5, Height: 8
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Text: 'C', X: 449.33511756111966, Y: 108.09910443798583, Width: 10.5, Height: 8
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Text: 'G', X: 456.2144769848766, Y: 89.31947680805757, Width: 10.5, Height: 8
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Text: 'G', X: 463.0938364086336, Y: 70.53984917812926, Width: 10.5, Height: 8
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Text: 'G', X: 465.65602899682415, Y: 53.22839572275444, Width: 10.5, Height: 8
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Text: 'U', X: 502.8373149304448, Y: 66.84865672128586, Width: 10.5, Height: 8
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Text: 'C', X: 493.6107313072671, Y: 81.71880824173434, Width: 10.5, Height: 8
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Text: 'G', X: 479.8520124597531, Y: 119.2780635015909, Width: 10.5, Height: 8
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Text: 'A', X: 482.90877556332464, Y: 136.50902979279593, Width: 10.5, Height: 8
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Text: 'G', X: 474.1116314046338, Y: 151.63715772229241, Width: 10.5, Height: 8
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Text: 'G', X: 474.1116314046338, Y: 171.63715772229241, Width: 10.5, Height: 8
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Text: 'A', X: 491.6116314046338, Y: 171.63715772229241, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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  v = VARNA(structure=fold_dbn, sequence=seq)

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Updated SVG: /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_final_5.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_final_5.svg
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Text: 'C', X: 527.368318062398, Y: 229.63953804705022, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'TNRC18, -44.3 ± 1.2
 kcal/mol, AUC: 0.803', X: 246.10520950332932, Y: 515.4804583780656, Width: 142.5, Height: 23
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Updated SVG: /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_final_9.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_final_9.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGCCCUGGAGCUGGACUUCCGGAUGCGGCUGGCCGAGGUGCAGCGCCAGUACAAGGAGAAGCAGCGUGAGCUGGUGAAGCUGCAGCGCCGCCGGGACUCCGAGGA', '-structureDBN', '..((.(((((......((((((...((((..((.....((((((((((((...................))))))...))))))))))))))))))))))).)).', '-o', '/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_8.svg', '-title', 'TNRC18, -46.0 ± 2.7\n kcal/mol, AUC: 0.812', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,7,8,10,12,13,14,17,18,21,22,24,25,27,28,30,31,32,35,37,38,39,40,43,45,49,50,55,56,58,61,64,66,67,68,70,72,73,74,75,76,79,81,82,85,87,90,93,94,95,98,101,103,104', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '3,4,5,71,11,16,19,20,88,89,91,92,29,33,99,100,44,46,47,48,62,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,34,65,97,9,41,15,80,86,23,26', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '69,77,78,83,84,96,36,102,105,42,51,52,53,54,57,59,60']Output file: /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_8.svg


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Text: 'G', X: 193.46044473314885, Y: 205.82469356534324, Width: 10.5, Height: 8
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Text: 'C', X: 173.46044473314885, Y: 205.82469356534324, Width: 10.5, Height: 8
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Text: 'A', X: 119.33466718059336, Y: 315.5631418918744, Width: 10.5, Height: 8
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Text: 'C', X: 125.3927953119003, Y: 331.9810601531935, Width: 10.5, Height: 8
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Text: 'A', X: 126.55117619634444, Y: 349.44264972050496, Width: 10.5, Height: 8
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Text: 'A', X: 122.71488176528399, Y: 366.51695209363, Width: 10.5, Height: 8
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Text: 'G', X: 114.19829222472217, Y: 381.80474654176015, Width: 10.5, Height: 8
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Text: 'G', X: 101.69933293526964, Y: 394.05321473869384, Width: 10.5, Height: 8
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Text: 'A', X: 86.24228017885869, Y: 402.25860787834387, Width: 10.5, Height: 8
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Text: 'G', X: 69.09382281816337, Y: 405.7485028107312, Width: 10.5, Height: 8
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Text: 'A', X: 51.65925850553381, Y: 404.2369063965154, Width: 10.5, Height: 8
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Text: 'A', X: 35.36733105056999, Y: 397.8476923374246, Width: 10.5, Height: 8
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Text: 'G', X: 21.553146400305565, Y: 387.1044498595184, Width: 10.5, Height: 8
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Text: 'C', X: 11.34876214160218, Y: 372.88757613878033, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'C', X: 90.51852586449411, Y: 268.0775753659441, Width: 10.5, Height: 8
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Text: 'U', X: 100.41037032975336, Y: 250.69507229316656, Width: 10.5, Height: 8
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Text: 'G', X: 110.30221479501265, Y: 233.31256922038904, Width: 10.5, Height: 8
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Text: 'G', X: 120.1940592602719, Y: 215.9300661476115, Width: 10.5, Height: 8
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Text: 'U', X: 130.08590372553118, Y: 198.54756307483402, Width: 10.5, Height: 8
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Text: 'G', X: 129.9223388834818, Y: 181.04832747603012, Width: 10.5, Height: 8
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Text: 'A', X: 141.1013505124473, Y: 167.58431251022392, Width: 10.5, Height: 8
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Text: 'A', X: 158.33231680365236, Y: 164.52754940665238, Width: 10.5, Height: 8
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Text: 'C', X: 193.46044473314885, Y: 173.32469356534324, Width: 10.5, Height: 8
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Text: 'U', X: 213.46044473314885, Y: 173.32469356534324, Width: 10.5, Height: 8
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Text: 'G', X: 233.46044473314885, Y: 173.32469356534324, Width: 10.5, Height: 8
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Text: 'C', X: 253.46044473314885, Y: 173.32469356534324, Width: 10.5, Height: 8
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Text: 'A', X: 273.46044473314885, Y: 173.32469356534324, Width: 10.5, Height: 8
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Text: 'G', X: 290.6286162716639, Y: 160.2045941970719, Width: 10.5, Height: 8
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Text: 'C', X: 295.8808561115833, Y: 140.90656381405194, Width: 10.5, Height: 8
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Text: 'G', X: 293.6847802475681, Y: 123.54490344415956, Width: 10.5, Height: 8
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Text: 'C', X: 283.79282861965476, Y: 106.16246135476882, Width: 10.5, Height: 8
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Text: 'C', X: 273.9008769917415, Y: 88.78001926537803, Width: 10.5, Height: 8
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Text: 'G', X: 264.0089253638282, Y: 71.3975771759873, Width: 10.5, Height: 8
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Text: 'C', X: 228.8807974343317, Y: 62.600433017296496, Width: 10.5, Height: 8
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Text: 'G', X: 208.8807974343317, Y: 62.600433017296496, Width: 10.5, Height: 8
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Text: 'G', X: 188.8807974343317, Y: 62.600433017296496, Width: 10.5, Height: 8
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Text: 'G', X: 168.8807974343317, Y: 62.600433017296496, Width: 10.5, Height: 8
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Text: 'A', X: 148.8807974343317, Y: 62.600433017296496, Width: 10.5, Height: 8
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Text: 'C', X: 136.00635992602454, Y: 75.47487052560359, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 136.00635992602454, Y: 95.47487052560359, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 136.00635992602454, Y: 115.47487052560359, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 136.00635992602457, Y: 135.4748705256036, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 136.00635992602457, Y: 155.4748705256036, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'G', X: 136.00635992602457, Y: 187.82594338576914, Width: 10.5, Height: 8
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Text: 'G', X: 136.00635992602457, Y: 207.82594338576914, Width: 10.5, Height: 8
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Text: 'A', X: 153.50635992602457, Y: 207.82594338576914, Width: 10.5, Height: 8
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Text: '90', X: 256.7655425189747, Y: 91.09012084863872, Width: 18.0, Height: 8
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Text: '100', X: 147.75635992602457, Y: 135.4748705256036, Width: 27.0, Height: 8
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Text: '105', X: 145.25635992602457, Y: 227.82594338576914, Width: 27.0, Height: 8
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Text: 'TNRC18, -46.0 ± 2.7
 kcal/mol, AUC: 0.812', X: 105.34100903465176, Y: 428.0301954102021, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 2.1004330172964956, 367.3683847305149, 428.0301954102021)
Updated viewBox: -0.25 -2.8995669827035044 372.6183847305149 435.9297623929056
Updated SVG: /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_final_8.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_final_8.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGCCCUGGAGCUGGACUUCCGGAUGCGGCUGGCCGAGGUGCAGCGCCAGUACAAGGAGAAGCAGCGUGAGCUGGUGAAGCUGCAGCGCCGCCGGGACUCCGAGGA', '-structureDBN', '..((.(((((((((....))))...((((.(((.(...((((((.((.......)).....((((....)))).....)))))).))))))))...))))).)).', '-o', '/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_4.svg', '-title', 'TNRC18, -41.6 ± 1.1\n kcal/mol, AUC: 0.839', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,7,8,10,12,13,14,17,18,21,22,24,25,27,28,30,31,32,35,37,38,39,40,43,45,49,50,55,56,58,61,64,66,67,68,70,72,73,74,75,76,79,81,82,85,87,90,93,94,95,98,101,103,104', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '3,4,5,71,11,16,19,20,88,89,91,92,29,33,99,100,44,46,47,48,62,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,34,65,97,9,41,15,80,86,23,26', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '69,77,78,83,84,96,36,102,105,42,51,52,53,54,57,59,60']Output file: /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_4.svg


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Text: 'G', X: 432.2987305698223, Y: 37.42801429658908, Width: 10.5, Height: 8
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Text: 'U', X: 446.3097286859138, Y: 26.942685297489163, Width: 10.5, Height: 8
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Text: 'A', X: 463.80871854103714, Y: 26.754147559148862, Width: 10.5, Height: 8
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Text: 'C', X: 478.04238012658664, Y: 36.93516274902743, Width: 10.5, Height: 8
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Text: 'A', X: 483.5175694166935, Y: 53.55660957732687, Width: 10.5, Height: 8
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Text: 'A', X: 478.12126699195653, Y: 70.20383494881935, Width: 10.5, Height: 8
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Text: 'G', X: 463.93604775750885, Y: 80.45223715107232, Width: 10.5, Height: 8
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Text: 'G', X: 457.92892532129406, Y: 99.52877981572527, Width: 10.5, Height: 8
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Text: 'A', X: 470.5469383767585, Y: 111.65460954123807, Width: 10.5, Height: 8
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Text: 'G', X: 478.7092750849316, Y: 127.13447580236601, Width: 10.5, Height: 8
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Text: 'A', X: 481.5869721866169, Y: 144.3962503169098, Width: 10.5, Height: 8
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Text: 'A', X: 478.88777205343126, Y: 161.68683499878256, Width: 10.5, Height: 8
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Text: 'G', X: 470.88580424160705, Y: 177.25020581421097, Width: 10.5, Height: 8
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Text: 'C', X: 458.39374501707607, Y: 189.50575379587252, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'C', X: 477.00542948160285, Y: 246.54613599474018, Width: 10.5, Height: 8
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Text: 'G', X: 485.6947505943931, Y: 261.7364931398308, Width: 10.5, Height: 8
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Text: 'A', X: 448.05050471099366, Y: 274.01941971357314, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'C', X: 439.9046609690406, Y: 237.61400434673627, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 433.7007661475317, Y: 218.60054361378042, Width: 10.5, Height: 8
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Text: 'G', X: 427.49687132602276, Y: 199.58708288082454, Width: 10.5, Height: 8
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Text: 'G', X: 410.1806337475241, Y: 197.0576726481831, Width: 10.5, Height: 8
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Text: 'U', X: 394.53949467460234, Y: 189.20880212424657, Width: 10.5, Height: 8
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Text: 'G', X: 382.1619611839693, Y: 176.8375990829794, Width: 10.5, Height: 8
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Text: 'A', X: 374.3050900315583, Y: 161.20047736271346, Width: 10.5, Height: 8
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Text: 'A', X: 371.7668215315773, Y: 143.8855360396248, Width: 10.5, Height: 8
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Text: 'G', X: 374.80494109569076, Y: 126.65127279705621, Width: 10.5, Height: 8
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Text: 'C', X: 358.7027312248731, Y: 114.78877570427926, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 342.60052135405533, Y: 102.92627861150231, Width: 10.5, Height: 8
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Text: 'G', X: 326.49831148323767, Y: 91.06378151872536, Width: 10.5, Height: 8
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Text: 'C', X: 310.39610161241995, Y: 79.20128442594842, Width: 10.5, Height: 8
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Text: 'A', X: 294.29389174160224, Y: 67.33878733317147, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 276.7938917416026, Y: 67.33878385954353, Width: 10.5, Height: 8
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Text: 'C', X: 262.70445604434235, Y: 56.95910170001821, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 247.08670711248044, Y: 61.04614293118624, Width: 10.5, Height: 8
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Text: 'C', X: 229.6504451216867, Y: 70.84291626674934, Width: 10.5, Height: 8
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Text: 'C', X: 212.21418313089293, Y: 80.63968960231244, Width: 10.5, Height: 8
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Text: 'G', X: 199.19356588975006, Y: 92.33214557441914, Width: 10.5, Height: 8
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Text: 'C', X: 187.58445665731836, Y: 108.61798552295937, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 175.97534742488665, Y: 124.9038254714996, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 164.36623819245494, Y: 141.18966542003983, Width: 10.5, Height: 8
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Text: 'G', X: 170.07378267958418, Y: 157.73275871988682, Width: 10.5, Height: 8
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Text: 'G', X: 168.4017923501837, Y: 175.15270270195492, Width: 10.5, Height: 8
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Text: 'A', X: 159.65177906965636, Y: 190.30813960065882, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 145.40164241081675, Y: 200.46607271741027, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 145.40164241081675, Y: 220.46607271741027, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 145.40164241081675, Y: 240.46607271741027, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 145.40164241081675, Y: 260.46607271741027, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 145.40164241081678, Y: 280.46607271741027, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 152.08001956230603, Y: 296.641609147493, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 145.40164241081678, Y: 312.8171455775758, Width: 10.5, Height: 8
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Text: 'G', X: 145.40164241081678, Y: 332.8171455775758, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 162.90164241081678, Y: 332.8171455775758, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 78.65164241081678, Y: 352.8171455775758, Width: 9.0, Height: 8
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Text: '10', X: 89.15164241081675, Y: 200.46607271741027, Width: 18.0, Height: 8
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Text: '20', X: 39.96603807173919, Y: 153.7243708923569, Width: 18.0, Height: 8
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Text: '30', X: 162.42285844690556, Y: 42.46452203698527, Width: 18.0, Height: 8
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Text: '40', X: 337.7851564809594, Y: 36.932983515051944, Width: 18.0, Height: 8
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Text: '50', X: 436.1429792190662, Y: 8.0, Width: 18.0, Height: 8
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Text: '60', X: 494.1544284420603, Y: 167.8809273291256, Width: 18.0, Height: 8
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Text: '70', X: 424.2226065240993, Y: 265.05879618484647, Width: 18.0, Height: 8
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Text: '80', X: 343.09023413209616, Y: 130.89098557509695, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 211.7294058382903, Y: 103.94125480685085, Width: 18.0, Height: 8
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Text: '100', X: 157.15164241081675, Y: 260.46607271741027, Width: 27.0, Height: 8
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Text: '105', X: 154.65164241081678, Y: 352.8171455775758, Width: 27.0, Height: 8
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Text: 'TNRC18, -41.6 ± 1.1
 kcal/mol, AUC: 0.839', X: 179.22237529719655, Y: 365.6171455775758, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 512.1544284420603, 365.6171455775758)
Updated viewBox: -0.25 -5.0 517.4044284420603 375.6171455775758
Updated SVG: /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_final_4.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_final_4.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGCCCUGGAGCUGGACUUCCGGAUGCGGCUGGCCGAGGUGCAGCGCCAGUACAAGGAGAAGCAGCGUGAGCUGGUGAAGCUGCAGCGCCGCCGGGACUCCGAGGA', '-structureDBN', '...((.......)).(((.((((..((((.(((.(...((((((((((((...................))))))...)))))).))))))))....))))))).', '-o', '/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_10.svg', '-title', 'TNRC18, -45.4 ± 1.3\n kcal/mol, AUC: 0.796', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,7,8,10,12,13,14,17,18,21,22,24,25,27,28,30,31,32,35,37,38,39,40,43,45,49,50,55,56,58,61,64,66,67,68,70,72,73,74,75,76,79,81,82,85,87,90,93,94,95,98,101,103,104', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '3,4,5,71,11,16,19,20,88,89,91,92,29,33,99,100,44,46,47,48,62,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,34,65,97,9,41,15,80,86,23,26', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '69,77,78,83,84,96,36,102,105,42,51,52,53,54,57,59,60']Output file: /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_10.svg


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Text: 'G', X: 22.25, Y: 602.1179276384332, Width: 10.5, Height: 8
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Text: 'C', X: 39.75, Y: 602.1179276384332, Width: 10.5, Height: 8
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Text: 'C', X: 57.25, Y: 602.1179276384332, Width: 10.5, Height: 8
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Text: 'C', X: 57.25, Y: 582.1179276384332, Width: 10.5, Height: 8
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Text: 'U', X: 46.797923343555624, Y: 568.0821061093493, Width: 10.5, Height: 8
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Text: 'A', X: 73.5, Y: 530.9374768925517, Width: 10.5, Height: 8
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Text: 'G', X: 90.13438286407657, Y: 536.3732380315093, Width: 10.5, Height: 8
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Text: 'C', X: 100.34912027679681, Y: 550.5827183885689, Width: 10.5, Height: 8
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Text: 'U', X: 100.20207665644438, Y: 568.0821061093493, Width: 10.5, Height: 8
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Text: 'G', X: 89.75, Y: 582.1179276384332, Width: 10.5, Height: 8
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Text: 'G', X: 89.75, Y: 602.1179276384332, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 107.25, Y: 602.1179276384332, Width: 10.5, Height: 8
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Text: 'C', X: 124.75, Y: 602.1179276384332, Width: 10.5, Height: 8
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Text: 'U', X: 124.75, Y: 582.1179276384332, Width: 10.5, Height: 8
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Text: 'U', X: 124.75, Y: 562.1179276384332, Width: 10.5, Height: 8
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Text: 'C', X: 120.93438113341733, Y: 545.0388959769982, Width: 10.5, Height: 8
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Text: 'C', X: 131.65572209255677, Y: 531.2075866439959, Width: 10.5, Height: 8
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Text: 'G', X: 140.16734010780456, Y: 513.1091790134194, Width: 10.5, Height: 8
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Text: 'A', X: 157.19057613830014, Y: 476.9123637522664, Width: 10.5, Height: 8
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Text: 'U', X: 151.00104595356228, Y: 459.50216078952127, Width: 10.5, Height: 8
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Text: 'G', X: 155.02985481152857, Y: 441.4690204557432, Width: 10.5, Height: 8
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Text: 'C', X: 168.0403366871268, Y: 428.34831877951837, Width: 10.5, Height: 8
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Text: 'G', X: 168.0403366871268, Y: 408.34831877951837, Width: 10.5, Height: 8
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Text: 'G', X: 168.0403366871268, Y: 388.34831877951837, Width: 10.5, Height: 8
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Text: 'C', X: 168.0403366871268, Y: 368.3483187795183, Width: 10.5, Height: 8
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Text: 'U', X: 164.22471782054413, Y: 351.2692871180834, Width: 10.5, Height: 8
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Text: 'G', X: 174.9460587796836, Y: 337.437977785081, Width: 10.5, Height: 8
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Text: 'G', X: 183.4576767949314, Y: 319.3395701545045, Width: 10.5, Height: 8
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Text: 'C', X: 191.9692948101792, Y: 301.241162523928, Width: 10.5, Height: 8
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Text: 'C', X: 195.2122415771134, Y: 284.9379166689354, Width: 10.5, Height: 8
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Text: 'G', X: 209.45126291867828, Y: 276.3610407589109, Width: 10.5, Height: 8
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Text: 'A', X: 212.07445731125756, Y: 259.05875662698224, Width: 10.5, Height: 8
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Text: 'G', X: 224.44883094776495, Y: 246.68438544670153, Width: 10.5, Height: 8
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Text: 'G', X: 241.75111560037908, Y: 244.06119448850495, Width: 10.5, Height: 8
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Text: 'U', X: 257.2372479100088, Y: 252.21164791711192, Width: 10.5, Height: 8
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Text: 'G', X: 277.0112818378613, Y: 249.21371826147606, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 296.78531576571373, Y: 246.2157886058402, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 316.55934969356616, Y: 243.21785895020423, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 336.3333836214186, Y: 240.21992929456826, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 356.107417549271, Y: 237.2219996389324, Width: 10.5, Height: 8
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Text: 'G', X: 369.74581376412084, Y: 226.25664534806413, Width: 10.5, Height: 8
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Text: 'C', X: 384.0948284255222, Y: 188.91891940971993, Width: 10.5, Height: 8
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Text: 'A', X: 391.2693357562229, Y: 170.25005644054795, Width: 10.5, Height: 8
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Text: 'G', X: 398.4438430869236, Y: 151.58119347137597, Width: 10.5, Height: 8
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Text: 'U', X: 405.6183504176243, Y: 132.91233050220387, Width: 10.5, Height: 8
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Text: 'A', X: 393.17225820397334, Y: 120.61014593603898, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 384.72158844161555, Y: 105.28581439896175, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 380.9588644361776, Y: 88.19514839234898, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 382.1924373763443, Y: 70.7387096291884, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 388.32121728531166, Y: 54.34703450679399, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 398.84295723575065, Y: 40.3634031863528, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 412.89541194576896, Y: 29.933759227253745, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 429.3269978531621, Y: 23.9128007438685, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 446.7911641508017, Y: 22.793938813568502, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 463.8567411782277, Y: 26.668862969171983, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 479.1252232373351, Y: 35.22002734026216, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 491.3453746314489, Y: 47.746673196022016, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 499.51576708604284, Y: 63.22225537016334, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

Text: 'G', X: 502.966845719665, Y: 80.37856653414156, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 501.4157983469454, Y: 97.8096654248676, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 494.9897316332663, Y: 114.08709222034213, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 484.2152548401275, Y: 127.87692928699369, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 469.97532476208016, Y: 138.0491142962734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 453.43688836627115, Y: 143.770047618072, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 435.9552527425288, Y: 144.57090491459246, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 428.7807454118281, Y: 163.23976788376456, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 421.6062380811274, Y: 181.90863085293654, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 414.4317307504267, Y: 200.57749382210852, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 407.257223419726, Y: 219.24635679128062, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 400.0827160890254, Y: 237.91521976045271, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 402.86750679346045, Y: 255.19222588803427, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 393.8330075194052, Y: 270.1798148491413, Width: 10.5, Height: 8
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Text: 'A', X: 377.25491995472925, Y: 275.78490295709605, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 360.97905323967933, Y: 269.35480477169256, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 341.2050193118269, Y: 272.3527344273285, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 321.4309853839745, Y: 275.3506640829644, Width: 10.5, Height: 8
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Text: 'G', X: 301.65695145612204, Y: 278.34859373860024, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 281.8829175282696, Y: 281.3465233942362, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 262.1088836004172, Y: 284.3444530498722, Width: 10.5, Height: 8
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Text: 'G', X: 249.734512473427, Y: 296.7188192644106, Width: 10.5, Height: 8
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Text: 'C', X: 232.43223330724106, Y: 299.3420111474737, Width: 10.5, Height: 8
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Text: 'G', X: 221.379207209866, Y: 315.07254179870563, Width: 10.5, Height: 8
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Text: 'C', X: 212.86758919461818, Y: 333.17094942928213, Width: 10.5, Height: 8
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Text: 'C', X: 204.35597117937036, Y: 351.26935705985863, Width: 10.5, Height: 8
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Text: 'G', X: 200.5403366871268, Y: 368.3483187795183, Width: 10.5, Height: 8
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Text: 'C', X: 200.5403366871268, Y: 388.34831877951837, Width: 10.5, Height: 8
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Text: 'C', X: 200.5403366871268, Y: 408.34831877951837, Width: 10.5, Height: 8
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Text: 'G', X: 200.5403366871268, Y: 428.3483187795183, Width: 10.5, Height: 8
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Text: 'G', X: 212.73688140079372, Y: 440.06329179207955, Width: 10.5, Height: 8
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Text: 'G', X: 217.619176048261, Y: 456.254631903782, Width: 10.5, Height: 8
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Text: 'A', X: 213.93187224511541, Y: 472.7591793468602, Width: 10.5, Height: 8
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Text: 'C', X: 202.6230592007046, Y: 485.33324166434846, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 186.60048853798693, Y: 490.74374302704405, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 178.08887052273914, Y: 508.84215065762055, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 169.57725250749135, Y: 526.940558288197, Width: 10.5, Height: 8
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Text: 'G', X: 161.06563449224356, Y: 545.0389659187736, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 157.25, Y: 562.1179276384332, Width: 10.5, Height: 8
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Text: 'G', X: 157.25, Y: 582.1179276384332, Width: 10.5, Height: 8
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Text: 'G', X: 157.25, Y: 602.1179276384332, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 174.75, Y: 602.1179276384332, Width: 10.5, Height: 8
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Text: '1', X: 5.5, Y: 622.1179276384332, Width: 9.0, Height: 8
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Text: '10', X: 98.19440410534716, Y: 520.2325008029705, Width: 18.0, Height: 8
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Text: '20', X: 108.98294990323595, Y: 524.7323497625323, Width: 18.0, Height: 8
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Text: '30', X: 140.95590442664735, Y: 346.90856198409074, Width: 18.0, Height: 8
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Text: '40', X: 270.26335218222545, Y: 229.43968433362363, Width: 18.0, Height: 8
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Text: '50', X: 382.0649861632472, Y: 135.70996596960498, Width: 18.0, Height: 8
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Text: '60', X: 467.2812485089284, Y: 8.0, Width: 18.0, Height: 8
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Text: '70', X: 445.038294164883, Y: 159.91082172832193, Width: 18.0, Height: 8
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Text: '80', X: 340.45294896746276, Y: 292.12676835518096, Width: 18.0, Height: 8
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Text: '90', X: 216.7903366871268, Y: 368.3483187795183, Width: 18.0, Height: 8
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Text: '100', X: 179.42566013806783, Y: 535.4521763034448, Width: 27.0, Height: 8
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Text: '105', X: 166.5, Y: 622.1179276384332, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'TNRC18, -45.4 ± 1.3
 kcal/mol, AUC: 0.796', X: 187.8584228598325, Y: 634.9179276384332, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 513.466845719665, 634.9179276384332)
Updated viewBox: -0.25 -5.0 518.716845719665 644.9179276384332
Updated SVG: /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_final_10.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_final_10.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGCCCUGGAGCUGGACUUCCGGAUGCGGCUGGCCGAGGUGCAGCGCCAGUACAAGGAGAAGCAGCGUGAGCUGGUGAAGCUGCAGCGCCGCCGGGACUCCGAGGA', '-structureDBN', '..((.(((((......((((((..(((((((((.(........)))))))..........(((((.............)))))..)))..))))))))))).)).', '-o', '/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_7.svg', '-title', 'TNRC18, -42.5 ± 1.5\n kcal/mol, AUC: 0.814', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,7,8,10,12,13,14,17,18,21,22,24,25,27,28,30,31,32,35,37,38,39,40,43,45,49,50,55,56,58,61,64,66,67,68,70,72,73,74,75,76,79,81,82,85,87,90,93,94,95,98,101,103,104', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '3,4,5,71,11,16,19,20,88,89,91,92,29,33,99,100,44,46,47,48,62,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,34,65,97,9,41,15,80,86,23,26', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '69,77,78,83,84,96,36,102,105,42,51,52,53,54,57,59,60']Output file: /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_7.svg


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Text: 'G', X: 22.25, Y: 375.53239985231016, Width: 10.5, Height: 8
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Text: 'C', X: 39.75, Y: 375.53239985231016, Width: 10.5, Height: 8
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Text: 'C', X: 39.75, Y: 355.53239985231016, Width: 10.5, Height: 8
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Text: 'C', X: 33.07162284851074, Y: 339.3568634222274, Width: 10.5, Height: 8
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Text: 'U', X: 39.74999999999997, Y: 323.1813269921446, Width: 10.5, Height: 8
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Text: 'G', X: 39.74999999999997, Y: 303.1813269921446, Width: 10.5, Height: 8
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Text: 'G', X: 39.74999999999997, Y: 283.1813269921446, Width: 10.5, Height: 8
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Text: 'A', X: 39.74999999999997, Y: 263.1813269921446, Width: 10.5, Height: 8
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Text: 'G', X: 39.74999999999997, Y: 243.1813269921446, Width: 10.5, Height: 8
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Text: 'C', X: 27.293448055299223, Y: 231.03420480816033, Width: 10.5, Height: 8
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Text: 'U', X: 22.649566982703504, Y: 214.26659817252926, Width: 10.5, Height: 8
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Text: 'G', X: 27.082218581403424, Y: 197.44191798215968, Width: 10.5, Height: 8
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Text: 'G', X: 39.385028498322214, Y: 185.13910806524092, Width: 10.5, Height: 8
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Text: 'A', X: 56.20970868869179, Y: 180.706456466541, Width: 10.5, Height: 8
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Text: 'C', X: 72.97731532432284, Y: 185.35033753913672, Width: 10.5, Height: 8
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Text: 'U', X: 85.12443750830712, Y: 197.80688948383744, Width: 10.5, Height: 8
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Text: 'U', X: 105.12443750830712, Y: 197.80688948383744, Width: 10.5, Height: 8
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Text: 'C', X: 125.12443750830712, Y: 197.80688948383744, Width: 10.5, Height: 8
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Text: 'C', X: 145.12443750830712, Y: 197.80688948383744, Width: 10.5, Height: 8
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Text: 'G', X: 165.12443750830712, Y: 197.80688948383744, Width: 10.5, Height: 8
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Text: 'G', X: 185.12443750830712, Y: 197.80688948383744, Width: 10.5, Height: 8
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Text: 'A', X: 199.21387672943823, Y: 187.42720616643567, Width: 10.5, Height: 8
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Text: 'U', X: 216.71388025330916, Y: 187.42720616643567, Width: 10.5, Height: 8
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Text: 'G', X: 230.80331947444023, Y: 197.80688948383744, Width: 10.5, Height: 8
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Text: 'C', X: 250.80331947444023, Y: 197.80688948383744, Width: 10.5, Height: 8
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Text: 'G', X: 270.80331947444023, Y: 197.80688948383744, Width: 10.5, Height: 8
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Text: 'G', X: 275.51982314250745, Y: 186.42024236140708, Width: 10.5, Height: 8
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Text: 'C', X: 261.3776875187765, Y: 172.27810673767613, Width: 10.5, Height: 8
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Text: 'U', X: 247.23555189504555, Y: 158.13597111394517, Width: 10.5, Height: 8
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Text: 'G', X: 233.0934162713146, Y: 143.99383549021422, Width: 10.5, Height: 8
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Text: 'G', X: 218.95128064758364, Y: 129.85169986648327, Width: 10.5, Height: 8
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Text: 'C', X: 204.8091450238527, Y: 115.70956424275226, Width: 10.5, Height: 8
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Text: 'C', X: 190.03439594496834, Y: 106.33091511383583, Width: 10.5, Height: 8
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Text: 'G', X: 187.83531621853416, Y: 88.9695695961604, Width: 10.5, Height: 8
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Text: 'A', X: 172.4455364045629, Y: 80.63859208258407, Width: 10.5, Height: 8
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Text: 'G', X: 164.05982306582172, Y: 65.27856861728003, Width: 10.5, Height: 8
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Text: 'G', X: 165.37431708923566, Y: 47.82799227961584, Width: 10.5, Height: 8
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Text: 'U', X: 175.96638763363683, Y: 33.897502315631755, Width: 10.5, Height: 8
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Text: 'G', X: 192.43051470109967, Y: 27.96597393243485, Width: 10.5, Height: 8
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Text: 'C', X: 209.47321825468566, Y: 31.940488322749843, Width: 10.5, Height: 8
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Text: 'A', X: 221.614996668423, Y: 44.54317557610716, Width: 10.5, Height: 8
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Text: 'G', X: 224.95207409177982, Y: 61.72207028225034, Width: 10.5, Height: 8
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Text: 'C', X: 218.41152678881338, Y: 77.95388318259802, Width: 10.5, Height: 8
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Text: 'G', X: 227.7901154124155, Y: 92.72859385418946, Width: 10.5, Height: 8
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Text: 'C', X: 241.93225103614645, Y: 106.8707294779204, Width: 10.5, Height: 8
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Text: 'C', X: 256.0743866598774, Y: 121.01286510165141, Width: 10.5, Height: 8
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Text: 'A', X: 270.21652228360836, Y: 135.15500072538237, Width: 10.5, Height: 8
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Text: 'G', X: 284.3586579073393, Y: 149.29713634911332, Width: 10.5, Height: 8
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Text: 'U', X: 298.50079353107026, Y: 163.43927197284427, Width: 10.5, Height: 8
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Text: 'A', X: 314.98009176541507, Y: 157.4756113748333, Width: 10.5, Height: 8
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Text: 'C', X: 332.48971453113666, Y: 156.73694458468003, Width: 10.5, Height: 8
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Text: 'A', X: 349.4127370505272, Y: 161.29148373073537, Width: 10.5, Height: 8
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Text: 'A', X: 364.1864041008485, Y: 170.71864024322645, Width: 10.5, Height: 8
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Text: 'G', X: 375.4464425260828, Y: 184.14786407362692, Width: 10.5, Height: 8
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Text: 'G', X: 382.1530449373843, Y: 200.33903457243503, Width: 10.5, Height: 8
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Text: 'A', X: 383.6868906470282, Y: 217.7969793358875, Width: 10.5, Height: 8
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Text: 'G', X: 379.9063367900431, Y: 234.90954578745124, Width: 10.5, Height: 8
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Text: 'A', X: 371.16049832376467, Y: 250.09647528444026, Width: 10.5, Height: 8
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Text: 'A', X: 358.25700903374997, Y: 261.9553319817457, Width: 10.5, Height: 8
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Text: 'G', X: 342.3874406535006, Y: 269.39101066289777, Width: 10.5, Height: 8
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Text: 'C', X: 342.3874406535006, Y: 289.39101066289777, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'G', X: 342.3874406535006, Y: 329.39101066289777, Width: 10.5, Height: 8
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Text: 'G', X: 309.8874406535006, Y: 349.39101066289777, Width: 10.5, Height: 8
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Text: 'C', X: 309.8874406535006, Y: 329.39101066289777, Width: 10.5, Height: 8
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Text: 'U', X: 309.8874406535006, Y: 309.39101066289777, Width: 10.5, Height: 8
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Text: 'G', X: 309.8874406535006, Y: 289.39101066289777, Width: 10.5, Height: 8
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Text: 'C', X: 309.8874406535006, Y: 269.39101066289777, Width: 10.5, Height: 8
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Text: 'A', X: 292.68442832514324, Y: 261.0337288072499, Width: 10.5, Height: 8
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Text: 'G', X: 279.1606013300882, Y: 247.5099018121948, Width: 10.5, Height: 8
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Text: 'C', X: 270.80331947444023, Y: 230.30688948383744, Width: 10.5, Height: 8
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Text: 'G', X: 250.80331947444023, Y: 230.30688948383744, Width: 10.5, Height: 8
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Text: 'C', X: 230.80331947444023, Y: 230.30688948383744, Width: 10.5, Height: 8
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Text: 'C', X: 216.71388025330916, Y: 240.6865728012392, Width: 10.5, Height: 8
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Text: 'G', X: 199.21387672943823, Y: 240.6865728012392, Width: 10.5, Height: 8
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Text: 'C', X: 185.12443750830712, Y: 230.30688948383744, Width: 10.5, Height: 8
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Text: 'C', X: 165.12443750830712, Y: 230.30688948383744, Width: 10.5, Height: 8
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Text: 'G', X: 145.12443750830712, Y: 230.30688948383744, Width: 10.5, Height: 8
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Text: 'G', X: 125.12443750830712, Y: 230.30688948383744, Width: 10.5, Height: 8
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Text: 'G', X: 105.12443750830712, Y: 230.30688948383744, Width: 10.5, Height: 8
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Text: 'A', X: 85.12443750830712, Y: 230.30688948383744, Width: 10.5, Height: 8
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Text: 'C', X: 72.24999999999997, Y: 243.1813269921446, Width: 10.5, Height: 8
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Text: 'U', X: 72.24999999999997, Y: 263.1813269921446, Width: 10.5, Height: 8
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Text: 'C', X: 72.24999999999997, Y: 283.1813269921446, Width: 10.5, Height: 8
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Text: 'C', X: 72.24999999999999, Y: 303.1813269921446, Width: 10.5, Height: 8
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Text: 'G', X: 72.25, Y: 323.1813269921446, Width: 10.5, Height: 8
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Text: 'A', X: 78.92837715148926, Y: 339.3568634222274, Width: 10.5, Height: 8
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Text: 'G', X: 72.25, Y: 355.53239985231016, Width: 10.5, Height: 8
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Text: 'G', X: 72.25, Y: 375.53239985231016, Width: 10.5, Height: 8
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Text: 'A', X: 89.75, Y: 375.53239985231016, Width: 10.5, Height: 8
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Text: '1', X: 5.5, Y: 395.53239985231016, Width: 9.0, Height: 8
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Text: '10', X: 16.708872594734608, Y: 248.45886462193175, Width: 18.0, Height: 8
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Text: '20', X: 141.37443750830712, Y: 177.80688948383744, Width: 18.0, Height: 8
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Text: '30', X: 229.3434162713146, Y: 172.27810673767613, Width: 18.0, Height: 8
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Text: '40', X: 187.51437365931622, Y: 8.0, Width: 18.0, Height: 8
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Text: '50', X: 300.57233090753755, Y: 144.30527859523505, Width: 18.0, Height: 8
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Text: '60', X: 365.6459347946328, Y: 278.56630223918523, Width: 18.0, Height: 8
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Text: '80', X: 286.1374406535006, Y: 329.39101066289777, Width: 18.0, Height: 8
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Text: '90', X: 189.22065080874174, Y: 259.6871551634497, Width: 18.0, Height: 8
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Text: '100', X: 83.99999999999999, Y: 303.1813269921446, Width: 27.0, Height: 8
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Text: '105', X: 81.5, Y: 395.53239985231016, Width: 27.0, Height: 8
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Text: 'TNRC18, -42.5 ± 1.5
 kcal/mol, AUC: 0.814', X: 128.2184453235141, Y: 453.20686346936895, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 394.1868906470282, 453.20686346936895)
Updated viewBox: -0.25 -5.0 399.4368906470282 463.20686346936895
Updated SVG: /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_final_7.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_final_7.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGCCCUGGAGCUGGACUUCCGGAUGCGGCUGGCCGAGGUGCAGCGCCAGUACAAGGAGAAGCAGCGUGAGCUGGUGAAGCUGCAGCGCCGCCGGGACUCCGAGGA', '-structureDBN', '..((((((.((((.(((((.((..........))))))).)))).))))............((((....))))(((..((....))..)))(((....))).)).', '-o', '/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_2.svg', '-title', 'TNRC18, -42.3 ± 1.3\n kcal/mol, AUC: 0.881', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,7,8,10,12,13,14,17,18,21,22,24,25,27,28,30,31,32,35,37,38,39,40,43,45,49,50,55,56,58,61,64,66,67,68,70,72,73,74,75,76,79,81,82,85,87,90,93,94,95,98,101,103,104', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '3,4,5,71,11,16,19,20,88,89,91,92,29,33,99,100,44,46,47,48,62,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,34,65,97,9,41,15,80,86,23,26', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '69,77,78,83,84,96,36,102,105,42,51,52,53,54,57,59,60']Output file: /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_2.svg


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Text: 'C', X: 191.11979086553444, Y: 245.5607552577634, Width: 10.5, Height: 8
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Text: 'A', X: 279.4310948397436, Y: 60.21035121738544, Width: 10.5, Height: 8
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Text: 'G', X: 296.485950035685, Y: 64.13232957600377, Width: 10.5, Height: 8
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Text: 'C', X: 312.19877222299584, Y: 71.83669320384178, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'C', X: 431.20516245534566, Y: 152.2964156602436, Width: 10.5, Height: 8
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Text: 'G', X: 417.1157232342146, Y: 162.67609897764532, Width: 10.5, Height: 8
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Text: 'C', X: 399.6157197103436, Y: 162.67609897764532, Width: 10.5, Height: 8
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Text: 'C', X: 385.5262804892126, Y: 152.2964156602436, Width: 10.5, Height: 8
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Text: 'G', X: 365.5262804892126, Y: 152.2964156602436, Width: 10.5, Height: 8
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Text: 'C', X: 345.5262804892126, Y: 152.2964156602436, Width: 10.5, Height: 8
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Text: 'C', X: 335.17974261155865, Y: 177.27516772808258, Width: 10.5, Height: 8
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Text: 'G', X: 349.3218782352896, Y: 191.41730335181353, Width: 10.5, Height: 8
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Text: 'G', X: 363.46401385902055, Y: 205.55943897554448, Width: 10.5, Height: 8
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Text: 'G', X: 378.090644238749, Y: 215.1674010555796, Width: 10.5, Height: 8
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Text: 'A', X: 379.8743001916695, Y: 232.5763017399479, Width: 10.5, Height: 8
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Text: 'C', X: 367.49990623486116, Y: 244.95069569675616, Width: 10.5, Height: 8
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Text: 'U', X: 350.09100555049287, Y: 243.1670397438357, Width: 10.5, Height: 8
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Text: 'C', X: 340.48304347045774, Y: 228.5404093641073, Width: 10.5, Height: 8
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Text: 'C', X: 326.3409078467268, Y: 214.39827374037634, Width: 10.5, Height: 8
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Text: 'G', X: 312.19877222299584, Y: 200.2561381166454, Width: 10.5, Height: 8
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Text: 'A', X: 300.17129489329903, Y: 206.54452917164917, Width: 10.5, Height: 8
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Text: 'G', X: 287.2200201551569, Y: 210.60267599429926, Width: 10.5, Height: 8
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Text: 'G', X: 287.2200201551569, Y: 230.60267599429926, Width: 10.5, Height: 8
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Text: 'A', X: 304.7200201551569, Y: 230.60267599429926, Width: 10.5, Height: 8
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Text: '1', X: 220.47002015515685, Y: 250.60267599429926, Width: 9.0, Height: 8
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Text: '10', X: 217.40535328841864, Y: 299.4189558527189, Width: 18.0, Height: 8
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Text: '20', X: 125.74212101978375, Y: 470.19307020957945, Width: 18.0, Height: 8
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Text: '30', X: -4.0, Y: 449.44079325023995, Width: 18.0, Height: 8
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Text: '40', X: 111.12063945425112, Y: 327.2666874463877, Width: 18.0, Height: 8
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Text: '50', X: 188.6443268162666, Y: 191.73145134592033, Width: 18.0, Height: 8
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Text: '60', X: 277.8987467270879, Y: 40.333680970421085, Width: 18.0, Height: 8
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Text: '70', X: 389.58678322892905, Y: 64.7422551401097, Width: 18.0, Height: 8
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Text: '80', X: 458.68148228460024, Y: 103.2443842715806, Width: 18.0, Height: 8
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Text: '90', X: 361.7762804892126, Y: 172.2964156602436, Width: 18.0, Height: 8
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Text: '100', X: 303.94877222299584, Y: 228.5404093641073, Width: 27.0, Height: 8
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Text: '105', X: 296.4700201551569, Y: 250.60267599429926, Width: 27.0, Height: 8
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Text: 'TNRC18, -42.3 ± 1.3
 kcal/mol, AUC: 0.881', X: 180.09010277810367, Y: 534.2680351738572, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 492.41279406947064, 534.2680351738572)
Updated viewBox: -9.0 0.0 506.41279406947064 539.2680351738572
Updated SVG: /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_final_2.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_final_2.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CGCCCUGGAGCUGGACUUCCGGAUGCGGCUGGCCGAGGUGCAGCGCCAGUACAAGGAGAAGCAGCGUGAGCUGGUGAAGCUGCAGCGCCGCCGGGACUCCGAGGA', '-structureDBN', '..((.((((((((...((((.......((((((.(........)))))))....))))...)))......((((((..((....))..))))))..))))).)).', '-o', '/disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_1.svg', '-title', 'TNRC18, -41.9 ± 1.1\n kcal/mol, AUC: 0.893', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,6,7,8,10,12,13,14,17,18,21,22,24,25,27,28,30,31,32,35,37,38,39,40,43,45,49,50,55,56,58,61,64,66,67,68,70,72,73,74,75,76,79,81,82,85,87,90,93,94,95,98,101,103,104', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '3,4,5,71,11,16,19,20,88,89,91,92,29,33,99,100,44,46,47,48,62,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,34,65,97,9,41,15,80,86,23,26', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '69,77,78,83,84,96,36,102,105,42,51,52,53,54,57,59,60']Output file: /disk1/www/rails/humanrnamap/public/result/8d51469c-5a08-4586-b8b9-68ad05d2ddb1/final_image/TNRC18_fold_1.svg


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Text: 'A', X: 363.0559131060246, Y: 180.80202915254787, Width: 10.5, Height: 8
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Text: 'C', X: 345.96569574702437, Y: 184.5669678548377, Width: 10.5, Height: 8
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Text: 'U', X: 329.32188062246945, Y: 179.1601470783083, Width: 10.5, Height: 8
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Text: 'U', X: 311.6032855971504, Y: 188.4365359408312, Width: 10.5, Height: 8
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Text: 'C', X: 293.88469057183136, Y: 197.71292480335407, Width: 10.5, Height: 8
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Text: 'C', X: 276.1660955465123, Y: 206.98931366587695, Width: 10.5, Height: 8
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Text: 'G', X: 275.2598680172256, Y: 224.00515612061446, Width: 10.5, Height: 8
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Text: 'G', X: 268.3442718216115, Y: 239.57868083528626, Width: 10.5, Height: 8
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Text: 'A', X: 256.3289563561934, Y: 251.66140970941765, Width: 10.5, Height: 8
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Text: 'U', X: 240.79436734871422, Y: 258.66402972966665, Width: 10.5, Height: 8
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Text: 'G', X: 223.78386145508352, Y: 259.66544473956, Width: 10.5, Height: 8
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Text: 'C', X: 207.53493143557978, Y: 254.533932681642, Width: 10.5, Height: 8
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Text: 'G', X: 194.18489545747343, Y: 243.94447178117363, Width: 10.5, Height: 8
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Text: 'U', X: 145.48976295618354, Y: 229.2899566556467, Width: 10.5, Height: 8
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Text: 'G', X: 125.48976295618354, Y: 229.2899566556467, Width: 10.5, Height: 8
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Text: 'G', X: 105.48976295618354, Y: 229.2899566556467, Width: 10.5, Height: 8
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Text: 'C', X: 85.48976295618354, Y: 229.2899566556467, Width: 10.5, Height: 8
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Text: 'C', X: 68.41073129474853, Y: 233.10557552222937, Width: 10.5, Height: 8
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Text: 'G', X: 54.57942196174611, Y: 222.38423456308993, Width: 10.5, Height: 8
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Text: 'A', X: 37.806313600556564, Y: 227.37556153675433, Width: 10.5, Height: 8
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Text: 'G', X: 21.015542082145313, Y: 222.4439795521637, Width: 10.5, Height: 8
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Text: 'G', X: 9.605608855954639, Y: 209.17507105040272, Width: 10.5, Height: 8
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Text: 'U', X: 7.244989845922756, Y: 191.83500222286608, Width: 10.5, Height: 8
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Text: 'G', X: 14.692661799083563, Y: 175.9988823845871, Width: 10.5, Height: 8
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Text: 'C', X: 29.554079128891658, Y: 166.75827720940958, Width: 10.5, Height: 8
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Text: 'A', X: 47.051058598931945, Y: 167.08418897541372, Width: 10.5, Height: 8
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Text: 'G', X: 61.55804161433559, Y: 176.8718318400171, Width: 10.5, Height: 8
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Text: 'C', X: 68.41080123652375, Y: 192.97432216340314, Width: 10.5, Height: 8
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Text: 'G', X: 85.48976295618354, Y: 196.7899566556467, Width: 10.5, Height: 8
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Text: 'C', X: 105.48976295618354, Y: 196.7899566556467, Width: 10.5, Height: 8
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Text: 'C', X: 125.48976295618354, Y: 196.7899566556467, Width: 10.5, Height: 8
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Text: 'A', X: 145.48976295618354, Y: 196.7899566556467, Width: 10.5, Height: 8
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Text: 'G', X: 165.48976295618354, Y: 196.7899566556467, Width: 10.5, Height: 8
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Text: 'U', X: 185.48976295618354, Y: 196.7899566556467, Width: 10.5, Height: 8
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Text: 'A', X: 194.99701589514927, Y: 181.22943153354015, Width: 10.5, Height: 8
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Text: 'C', X: 209.7126893006547, Y: 170.46064530928624, Width: 10.5, Height: 8
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Text: 'A', X: 227.42010600705788, Y: 166.10574070562674, Width: 10.5, Height: 8
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Text: 'A', X: 245.4519313165863, Y: 168.82071336254845, Width: 10.5, Height: 8
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Text: 'G', X: 261.09196364491254, Y: 178.19659674973346, Width: 10.5, Height: 8
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Text: 'G', X: 278.81055867023167, Y: 168.92020788721058, Width: 10.5, Height: 8
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Text: 'A', X: 296.5291536955507, Y: 159.6438190246877, Width: 10.5, Height: 8
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Text: 'G', X: 314.24774872086977, Y: 150.36743016216482, Width: 10.5, Height: 8
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Text: 'A', X: 319.2869930347476, Y: 133.60867075864542, Width: 10.5, Height: 8
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Text: 'A', X: 332.11812759230537, Y: 121.70858731499487, Width: 10.5, Height: 8
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Text: 'G', X: 349.20833629186234, Y: 117.94364819123899, Width: 10.5, Height: 8
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Text: 'C', X: 365.85214556800287, Y: 123.35045989310726, Width: 10.5, Height: 8
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Text: 'A', X: 383.5707357704819, Y: 114.07406181860591, Width: 10.5, Height: 8
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Text: 'G', X: 401.28932597296097, Y: 104.79766374410451, Width: 10.5, Height: 8
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Text: 'C', X: 402.3727247207372, Y: 87.33123173429448, Width: 10.5, Height: 8
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Text: 'G', X: 409.81335323434786, Y: 71.49181737256873, Width: 10.5, Height: 8
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Text: 'U', X: 422.56499095283937, Y: 59.50658748339487, Width: 10.5, Height: 8
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Text: 'G', X: 438.8346407466662, Y: 53.06077523153482, Width: 10.5, Height: 8
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Text: 'G', X: 472.60433056843874, Y: 59.50643211182904, Width: 10.5, Height: 8
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Text: 'G', X: 676.5316810244814, Y: 25.930749116502966, Width: 10.5, Height: 8
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Text: 'A', X: 671.1332278071603, Y: 57.076616804055504, Width: 10.5, Height: 8
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Text: 'G', X: 653.6735482294315, Y: 58.264404933153855, Width: 10.5, Height: 8
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Text: 'C', X: 634.409516694455, Y: 63.64000620365624, Width: 10.5, Height: 8
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Text: 'G', X: 623.6284016455604, Y: 77.42469184760552, Width: 10.5, Height: 8
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Text: 'C', X: 606.7723749860982, Y: 82.12834630509889, Width: 10.5, Height: 8
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Text: 'C', X: 590.4115542112015, Y: 75.91758599965215, Width: 10.5, Height: 8
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Text: 'G', X: 571.1475248102652, Y: 81.29319491770588, Width: 10.5, Height: 8
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Text: 'C', X: 551.8834954093288, Y: 86.66880383575955, Width: 10.5, Height: 8
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Text: 'G', X: 463.83478308453664, Y: 255.00234553411826, Width: 10.5, Height: 8
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