Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 95% [================================================  ] |                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/9195f6cb-7f6d-4963-9594-a2dc72ade7dd/final_image/MLLT6_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 159.08 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 159.08 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 159.08 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.70 MB
Based on canonical annotations, the following gene is in your area of interest: MLLT6(+)
write fasta - Elapsed time since the previous call: 1.22 seconds
write fasta - Current memory usage: 172.70 MB
Length of region: 100 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.18 seconds
write dat - Current memory usage: 176.20 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/9195f6cb-7f6d-4963-9594-a2dc72ade7dd/fasta/MLLT6.fasta" "/disk1/www/rails/humanrnamap/public/result/9195f6cb-7f6d-4963-9594-a2dc72ade7dd/ct/MLLT6.ct" --SHAPE "MLLT6.dat"

fold - Elapsed time since the previous call: 0.12 seconds
fold - Current memory usage: 176.20 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/9195f6cb-7f6d-4963-9594-a2dc72ade7dd/ct/MLLT6.ct" "/disk1/www/rails/humanrnamap/public/result/9195f6cb-7f6d-4963-9594-a2dc72ade7dd/fold_FE/MLLT6.txt" -sh "MLLT6.dat"

efn2 - Elapsed time since the previous call: 0.51 seconds
efn2 - Current memory usage: 176.20 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/9195f6cb-7f6d-4963-9594-a2dc72ade7dd/ct/MLLT6.ct" 1 "/disk1/www/rails/humanrnamap/public/result/9195f6cb-7f6d-4963-9594-a2dc72ade7dd/fold_dbn/MLLT6_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.20 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AAGCUUUCCACGUCACCUGUGCCCAAAUGGCAGGCUUGCUGUGUGAGGAAGAAGUGCUGGAGGUGGACAACGUCAAGUACUGCGGCUACUGCAAAUACCA', '-structureDBN', '...(((((((((.((....((((.....))))....))...)))).))))).((((((.((.((.....)).)).))))))((((...))))........', '-o', '/disk1/www/rails/humanrnamap/public/result/9195f6cb-7f6d-4963-9594-a2dc72ade7dd/final_image/MLLT6_fold_1.svg', '-title', 'MLLT6, -27.4 ± 1.0\n kcal/mol, AUC: 0.694', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,5,6,7,12,13,18,19,20,21,28,29,30,33,34,36,37,38,40,41,42,43,44,45,47,48,51,54,55,56,58,59,60,62,63,64,65,66,72,73,77,78,81,82,84,85,87,90,91,96', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '98,99,4,100,14,22,23,86,25,57,61,31', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '35,39,8,9,15,80,17,49,83,24', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '1,2,67,68,69,70,71,10,11,74,75,76,79,16,88,89,26,27,92,93,94,95,32,97,46,50,52,53']
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Text: '40', X: 224.3926418482165, Y: 92.12080177353289, Width: 18.0, Height: 8
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Text: '50', X: 266.346437221414, Y: 284.0656290818323, Width: 18.0, Height: 8
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Text: '60', X: 261.346437221414, Y: 171.71455622166684, Width: 18.0, Height: 8
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Text: '70', X: 332.3235813401319, Y: 91.70873678071038, Width: 18.0, Height: 8
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Text: 'MLLT6, -27.4 ± 1.0
 kcal/mol, AUC: 0.694', X: 190.173218610707, Y: 336.86562908183237, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 526.346437221414, 336.86562908183237)
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Updated SVG: /disk1/www/rails/humanrnamap/public/result/9195f6cb-7f6d-4963-9594-a2dc72ade7dd/final_image/MLLT6_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/9195f6cb-7f6d-4963-9594-a2dc72ade7dd/final_image/MLLT6_fold_final_1.svg
