Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 98% [==================================================] |                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/935160a6-4f9a-4086-b510-805cfbc2aec0/final_image/MYH10_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 158.26 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 158.26 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 158.26 MB
read annotations - Elapsed time since the previous call: 0.10 seconds
read annotations - Current memory usage: 171.83 MB
Based on canonical annotations, the following gene is in your area of interest: MYH10(-)
write fasta - Elapsed time since the previous call: 1.19 seconds
write fasta - Current memory usage: 171.83 MB
Length of region: 96 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.19 seconds
write dat - Current memory usage: 175.25 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/935160a6-4f9a-4086-b510-805cfbc2aec0/fasta/MYH10.fasta" "/disk1/www/rails/humanrnamap/public/result/935160a6-4f9a-4086-b510-805cfbc2aec0/ct/MYH10.ct" --SHAPE "MYH10.dat"

fold - Elapsed time since the previous call: 0.11 seconds
fold - Current memory usage: 175.25 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/935160a6-4f9a-4086-b510-805cfbc2aec0/ct/MYH10.ct" "/disk1/www/rails/humanrnamap/public/result/935160a6-4f9a-4086-b510-805cfbc2aec0/fold_FE/MYH10.txt" -sh "MYH10.dat"

efn2 - Elapsed time since the previous call: 0.42 seconds
efn2 - Current memory usage: 175.25 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/935160a6-4f9a-4086-b510-805cfbc2aec0/ct/MYH10.ct" 1 "/disk1/www/rails/humanrnamap/public/result/935160a6-4f9a-4086-b510-805cfbc2aec0/fold_dbn/MYH10_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 175.25 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CUGUCGCCAGGGCUUCCCUAACCGAAUAGUUUUCCAGGAAUUCAGACAGAGAUAUGAGAUCCUAACUCCAAAUGCUAUUCCUAAAGGUUUUAUGGA', '-structureDBN', '((((((..((((...))))...))).)))......((((.((((..........)))).))))...((((...(((.........)))....))))', '-o', '/disk1/www/rails/humanrnamap/public/result/935160a6-4f9a-4086-b510-805cfbc2aec0/final_image/MYH10_fold_1.svg', '-title', 'MYH10, -12.8 ± 0.9\n kcal/mol, AUC: 0.718', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,6,10,11,12,14,15,19,24,27,29,30,31,32,33,37,38,41,42,45,49,51,53,55,56,58,60,63,67,73,74,76,78,79,82,86,87,88,89,90,91,93,94,95', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '9,18,36,70', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '64,68,5,69,8,72,77,16,17,81,83,84,28,92,96,35,39,61,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '1,65,66,7,71,75,13,80,20,21,22,23,85,25,26,34,40,43,44,46,47,48,50,52,54,57,59']
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Text: 'G', X: 293.4597410546351, Y: 115.11022916049743, Width: 10.5, Height: 8
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Text: 'C', X: 293.4597410546351, Y: 227.46130202066297, Width: 10.5, Height: 8
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Text: 'U', X: 293.4597410546351, Y: 247.46130202066297, Width: 10.5, Height: 8
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Text: 'C', X: 363.4597410546351, Y: 207.46130202066297, Width: 10.5, Height: 8
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Text: 'A', X: 363.4597410546351, Y: 187.46130202066297, Width: 10.5, Height: 8
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Text: 'U', X: 346.06832678444607, Y: 142.31880996165623, Width: 10.5, Height: 8
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Text: 'G', X: 395.9597410546351, Y: 207.46130202066297, Width: 10.5, Height: 8
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Text: 'G', X: 395.9597410546351, Y: 227.46130202066297, Width: 10.5, Height: 8
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Text: 'A', X: 395.9597410546351, Y: 247.46130202066297, Width: 10.5, Height: 8
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Text: '30', X: 152.20974105463512, Y: 267.46130202066297, Width: 18.0, Height: 8
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Text: '40', X: 230.53136390314586, Y: 171.2857655905802, Width: 18.0, Height: 8
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Text: '50', X: 287.03000759383605, Y: 8.0, Width: 18.0, Height: 8
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Text: '80', X: 313.9197662509276, Y: 18.3796727397729, Width: 18.0, Height: 8
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Text: '96', X: 392.2097410546351, Y: 267.46130202066297, Width: 18.0, Height: 8
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Text: 'MYH10, -12.8 ± 0.9
 kcal/mol, AUC: 0.718', X: 144.12047101837834, Y: 280.261302020663, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 446.2641505126345, 280.261302020663)
Updated viewBox: -0.25 -5.0 451.5141505126345 290.261302020663
Updated SVG: /disk1/www/rails/humanrnamap/public/result/935160a6-4f9a-4086-b510-805cfbc2aec0/final_image/MYH10_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/935160a6-4f9a-4086-b510-805cfbc2aec0/final_image/MYH10_fold_final_1.svg
