Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/96ae8d4e-9359-4c59-ac44-06511a8aa457/final_image/CLASP1_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 157.00 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 157.00 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 157.00 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 170.63 MB
Based on canonical annotations, the following gene is in your area of interest: CLASP1(-)
write fasta - Elapsed time since the previous call: 0.75 seconds
write fasta - Current memory usage: 170.63 MB
Length of region: 102 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.19 seconds
write dat - Current memory usage: 173.75 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/96ae8d4e-9359-4c59-ac44-06511a8aa457/fasta/CLASP1.fasta" "/disk1/www/rails/humanrnamap/public/result/96ae8d4e-9359-4c59-ac44-06511a8aa457/ct/CLASP1.ct" --SHAPE "CLASP1.dat"

fold - Elapsed time since the previous call: 0.10 seconds
fold - Current memory usage: 173.75 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/96ae8d4e-9359-4c59-ac44-06511a8aa457/ct/CLASP1.ct" "/disk1/www/rails/humanrnamap/public/result/96ae8d4e-9359-4c59-ac44-06511a8aa457/fold_FE/CLASP1.txt" -sh "CLASP1.dat"

efn2 - Elapsed time since the previous call: 0.40 seconds
efn2 - Current memory usage: 173.75 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/96ae8d4e-9359-4c59-ac44-06511a8aa457/ct/CLASP1.ct" 1 "/disk1/www/rails/humanrnamap/public/result/96ae8d4e-9359-4c59-ac44-06511a8aa457/fold_dbn/CLASP1_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.75 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CCUGCCUUUUCUAUGCGCCUCACUAGCUUACCACCCUGUGCAGGUAAUGCAACUGACUUUGUCUCAUCAGUCUUUUUCUUUCCCUGCCACCCUUUAUUUAUC', '-structureDBN', '.....................................(((((((..........((((..........))))..........)))).)))............', '-o', '/disk1/www/rails/humanrnamap/public/result/96ae8d4e-9359-4c59-ac44-06511a8aa457/final_image/CLASP1_fold_1.svg', '-title', 'CLASP1, -12.2 ± 0.5\n kcal/mol, AUC: 0.793', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,4,7,8,9,10,12,14,15,17,20,24,26,28,29,37,38,39,40,43,44,45,48,49,54,55,58,59,60,61,62,64,67,70,71,73,74,75,76,77,79,80,81,85,86,93,94,95,97,98,99,101', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '32,1,2,35,96,69,72,78,89', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '33,36,5,68,41,42,46,18,19,50,82,83,84,56,88', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '65,66,6,11,13,16,21,22,23,87,25,90,27,91,92,30,31,34,100,102,47,51,52,53,57,63']
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Text: 'CLASP1, -12.2 ± 0.5
 kcal/mol, AUC: 0.793', X: 383.75, Y: 410.0629617170666, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 913.5, 410.0629617170666)
Updated viewBox: -0.25 0.0 918.75 415.0629617170666
Updated SVG: /disk1/www/rails/humanrnamap/public/result/96ae8d4e-9359-4c59-ac44-06511a8aa457/final_image/CLASP1_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/96ae8d4e-9359-4c59-ac44-06511a8aa457/final_image/CLASP1_fold_final_1.svg
