Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/99201e80-c100-48e3-8ff6-42e957ae3370/final_image/MYH10_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 158.32 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 158.32 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 158.32 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 171.93 MB
Based on canonical annotations, the following gene is in your area of interest: MYH10(-)
write fasta - Elapsed time since the previous call: 0.59 seconds
write fasta - Current memory usage: 171.93 MB
Length of region: 91 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.20 seconds
write dat - Current memory usage: 175.18 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/99201e80-c100-48e3-8ff6-42e957ae3370/fasta/MYH10.fasta" "/disk1/www/rails/humanrnamap/public/result/99201e80-c100-48e3-8ff6-42e957ae3370/ct/MYH10.ct" --SHAPE "MYH10.dat"

fold - Elapsed time since the previous call: 0.09 seconds
fold - Current memory usage: 175.18 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/99201e80-c100-48e3-8ff6-42e957ae3370/ct/MYH10.ct" "/disk1/www/rails/humanrnamap/public/result/99201e80-c100-48e3-8ff6-42e957ae3370/fold_FE/MYH10.txt" -sh "MYH10.dat"

efn2 - Elapsed time since the previous call: 0.50 seconds
efn2 - Current memory usage: 175.18 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/99201e80-c100-48e3-8ff6-42e957ae3370/ct/MYH10.ct" 1 "/disk1/www/rails/humanrnamap/public/result/99201e80-c100-48e3-8ff6-42e957ae3370/fold_dbn/MYH10_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.18 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGGAGGAGACACGCCAGAAACUAAACCUGAGCAGUCGGAUCCGGCAGCUGGAAGAGGAGAAGAACAGUCUUCAGGAGCAGCAGGAGGAGGA', '-structureDBN', '.(((...(((..(((((.........))).)).)))...))).((.(((....(((((.........)))))...))).))..........', '-o', '/disk1/www/rails/humanrnamap/public/result/99201e80-c100-48e3-8ff6-42e957ae3370/final_image/MYH10_fold_1.svg', '-title', 'MYH10, -22.7 ± 1.1\n kcal/mol, AUC: 0.765', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,8,13,17,22,28,29,31,34,35,37,38,40,43,44,47,49,50,51,54,56,57,59,62,67,68,70,71,74,75,77,80,83,84,86,87,89,90', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '32,65,7,72,14,15,16,48,23,27', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '33,36,69,9,10,41,42,76,19,24,61,30,63', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,66,4,73,11,12,78,79,81,18,82,20,21,85,88,25,26,91,39,45,46,52,53,55,58,60']
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Text: '50', X: 56.40026376748122, Y: 243.06986415072862, Width: 18.0, Height: 8
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Text: 'MYH10, -22.7 ± 1.1
 kcal/mol, AUC: 0.765', X: 85.0, Y: 368.159892172569, Width: 142.5, Height: 23
Calculated bounding box: (-1.4229858439260141, 5.0, 311.5, 368.159892172569)
Updated viewBox: -6.422985843926014 0.0 322.922985843926 373.159892172569
Updated SVG: /disk1/www/rails/humanrnamap/public/result/99201e80-c100-48e3-8ff6-42e957ae3370/final_image/MYH10_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/99201e80-c100-48e3-8ff6-42e957ae3370/final_image/MYH10_fold_final_1.svg
