Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 94% [================================================  ] -                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/final_image/LMNA_fold_3.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 157.75 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 157.75 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 157.75 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 171.41 MB
Based on canonical annotations, the following gene is in your area of interest: LMNA(+)
write fasta - Elapsed time since the previous call: 1.04 seconds
write fasta - Current memory usage: 171.41 MB
Length of region: 90 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.23 seconds
write dat - Current memory usage: 174.62 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/fasta/LMNA.fasta" "/disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/ct/LMNA.ct" --SHAPE "LMNA.dat"

fold - Elapsed time since the previous call: 0.14 seconds
fold - Current memory usage: 174.62 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/ct/LMNA.ct" "/disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/fold_FE/LMNA.txt" -sh "LMNA.dat"

efn2 - Elapsed time since the previous call: 0.53 seconds
efn2 - Current memory usage: 174.62 MB
This region has 6 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/ct/LMNA.ct" 1 "/disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/fold_dbn/LMNA_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 174.62 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/ct/LMNA.ct" 2 "/disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/fold_dbn/LMNA_temp2.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 174.62 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/ct/LMNA.ct" 3 "/disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/fold_dbn/LMNA_temp3.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 174.62 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/ct/LMNA.ct" 4 "/disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/fold_dbn/LMNA_temp4.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 174.62 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/ct/LMNA.ct" 5 "/disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/fold_dbn/LMNA_temp5.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 174.62 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/ct/LMNA.ct" 6 "/disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/fold_dbn/LMNA_temp6.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 174.62 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CAGGCCAGCUCCACUCCGCUGUCGCCCACCCGCAUCACCCGGCUGCAGGAGAAGGAGGACCUGCAGGAGCUCAAUGAUCGCUUGGCGGUC', '-structureDBN', '........((((..((..((((.(((..............))).))))..)).))))((((.((..((((.........)))).))))))', '-o', '/disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/final_image/LMNA_fold_3.svg', '-title', 'LMNA, -29.1 ± 1.4\n kcal/mol, AUC: 0.673', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,4,8,10,15,18,20,21,22,24,32,35,41,42,44,45,48,49,51,54,55,57,58,62,63,66,67,69,71,75,76,78,80,82,83,84,85,87,88,89', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '6,7,77,47,17,86,56,90,60,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,2,68,5,72,9,73,11,12,13,74,81,19,25,26,28,33,37,43,50,53,59,61', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,70,14,79,16,23,27,29,31,34,36,38,39,40,46,52']
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Text: 'C', X: 219.34055288764947, Y: 193.67361229370465, Width: 10.5, Height: 8
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Text: 'A', X: 204.46238338448933, Y: 264.46503302764984, Width: 10.5, Height: 8
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Text: 'G', X: 189.8697404788763, Y: 274.1244726091815, Width: 10.5, Height: 8
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Text: 'A', X: 186.04714415869086, Y: 310.1350665303148, Width: 10.5, Height: 8
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Text: 'U', X: 190.93438113341733, Y: 308.1841627983763, Width: 10.5, Height: 8
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Text: 'G', X: 201.65572209255677, Y: 294.3528534653739, Width: 10.5, Height: 8
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Text: 'C', X: 210.16734010780456, Y: 276.2544458347974, Width: 10.5, Height: 8
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Text: 'A', X: 208.63306463598636, Y: 258.86461100445564, Width: 10.5, Height: 8
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Text: 'G', X: 218.66958799280894, Y: 244.58075453787262, Width: 10.5, Height: 8
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Text: 'G', X: 263.8343622871778, Y: 211.84575598654715, Width: 10.5, Height: 8
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Text: 'C', X: 277.97649791090873, Y: 197.7036203628162, Width: 10.5, Height: 8
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Text: 'U', X: 333.9858088558294, Y: 164.6752798064582, Width: 10.5, Height: 8
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Text: 'G', X: 342.7078759063925, Y: 179.84679991677376, Width: 10.5, Height: 8
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Text: 'U', X: 333.7220182913373, Y: 212.42073700996167, Width: 10.5, Height: 8
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Text: 'C', X: 318.4550495999596, Y: 220.97463337762474, Width: 10.5, Height: 8
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Text: 'G', X: 300.95746829947154, Y: 220.68459075137895, Width: 10.5, Height: 8
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Text: 'G', X: 227.25, Y: 325.2631944598113, Width: 10.5, Height: 8
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Text: 'G', X: 227.25, Y: 345.2631944598113, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/final_image/LMNA_fold_1.svg


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Text: 'C', X: 227.25, Y: 385.2631944598113, Width: 10.5, Height: 8
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Text: '1', X: 5.5, Y: 405.2631944598113, Width: 9.0, Height: 8
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Text: '10', X: 121.0, Y: 365.2631944598113, Width: 18.0, Height: 8
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Text: '20', X: 159.41467064898552, Y: 194.3948991352295, Width: 18.0, Height: 8
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Text: '30', X: 192.58387486166896, Y: 20.580106616489672, Width: 18.0, Height: 8
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Text: '40', X: 271.81920019437104, Y: 122.36226789725595, Width: 18.0, Height: 8
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Text: '50', X: 216.4061050659915, Y: 276.86289977090644, Width: 18.0, Height: 8
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Text: '60', X: 171.0, Y: 345.2631944598113, Width: 18.0, Height: 8
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Text: '70', X: 256.8327953963322, Y: 187.8314821529645, Width: 18.0, Height: 8
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Text: '80', X: 307.07960650932256, Y: 238.0782932659559, Width: 18.0, Height: 8
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Text: '90', X: 223.5, Y: 405.2631944598113, Width: 18.0, Height: 8
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Text: 'LMNA, -29.1 ± 1.4
 kcal/mol, AUC: 0.673', X: 107.72893795319624, Y: 418.0631944598113, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 353.2078759063925, 418.0631944598113)
Updated viewBox: -0.25 0.0 358.4578759063925 423.0631944598113
Updated SVG: /disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/final_image/LMNA_fold_final_3.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/final_image/LMNA_fold_final_3.svg
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Text: 'G', X: 226.6892089992798, Y: 200.6997961851273, Width: 10.5, Height: 8
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Text: 'U', X: 244.1892089992798, Y: 180.6997961851273, Width: 10.5, Height: 8
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Text: 'C', X: 244.1892089992798, Y: 140.6997961851273, Width: 10.5, Height: 8
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Text: 'A', X: 244.1892089992798, Y: 120.6997961851273, Width: 10.5, Height: 8
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Text: 'C', X: 276.6892089992798, Y: 160.6997961851273, Width: 10.5, Height: 8
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Text: 'A', X: 276.6892089992798, Y: 180.6997961851273, Width: 10.5, Height: 8
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Text: 'G', X: 276.6892089992798, Y: 200.6997961851273, Width: 10.5, Height: 8
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Text: 'G', X: 294.1892089992798, Y: 200.6997961851273, Width: 10.5, Height: 8
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Text: 'U', X: 484.1892089992798, Y: 180.69979618512733, Width: 10.5, Height: 8
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Text: '90', X: 480.4392089992798, Y: 220.69979618512733, Width: 18.0, Height: 8
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Text: 'LMNA, -28.5 ± 0.9
 kcal/mol, AUC: 0.708', X: 178.4696044996399, Y: 233.49979618512734, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 498.4392089992798, 233.49979618512734)/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/final_image/LMNA_fold_5.svg


Updated viewBox: -0.25 0.0 503.6892089992798 238.49979618512734
Updated SVG: /disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/final_image/LMNA_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/final_image/LMNA_fold_final_1.svg
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Text: 'C', X: 186.09578730066792, Y: 348.0577552208259, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 203.42778980886254, Y: 350.47681992834964, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 221.01519818503044, Y: 340.95405422662736, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 234.21730013108328, Y: 329.46671145872756, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 246.0799094769456, Y: 313.36458428535514, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 257.9425188228079, Y: 297.2624571119826, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 269.80512816867025, Y: 281.1603299386102, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 262.4754649975737, Y: 266.53883664392356, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 260.001841279537, Y: 250.37117713273085, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 262.6244119528646, Y: 234.2270094108663, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 270.0885613726387, Y: 219.67371075360035, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 281.66962299789327, Y: 208.12420686813624, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 296.24323457424293, Y: 200.69979618512724, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 296.24323457424293, Y: 180.69979618512724, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 296.24323457424293, Y: 160.69979618512724, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 296.24323457424293, Y: 140.69979618512724, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 296.24323457424293, Y: 120.69979618512724, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 296.24323457424293, Y: 100.69979618512724, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 296.24323457424293, Y: 80.69979618512724, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 282.943307291705, Y: 69.32609639184449, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 276.5093327131071, Y: 53.051788915627014, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 278.4362507322981, Y: 35.65822402352302, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 288.27634018036844, Y: 21.186812469618246, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 303.7432472498447, Y: 12.999999999999943, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/final_image/LMNA_fold_4.svg


Warning: Font Verdana not found. Using default font.
Text: 'G', X: 321.2432218986411, Y: 12.999999999999943, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 336.7101289681174, Y: 21.186812469618133, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 346.55021841618776, Y: 35.65822402352302, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 348.4771364353788, Y: 53.0517889156269, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 342.04316185678084, Y: 69.32609639184449, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 328.74323457424293, Y: 80.69979618512724, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 328.74323457424293, Y: 100.69979618512724, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 328.74323457424293, Y: 120.69979618512724, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 328.74323457424293, Y: 140.69979618512724, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 328.74323457424293, Y: 160.69979618512724, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 328.74323457424293, Y: 180.69979618512724, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 328.74323457424293, Y: 200.69979618512724, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 344.8596750764785, Y: 209.2873851876637, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 357.05880901965986, Y: 222.8766261662799, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 363.8641766303653, Y: 239.82281485346704, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 364.45212505197776, Y: 258.0749559879232, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 358.75149495487585, Y: 275.42399503435456, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 347.45223294188656, Y: 289.7701797989671, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 331.9218873905616, Y: 299.37719319518044, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 314.04009423085057, Y: 303.08229950025407, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 295.9710848254005, Y: 300.4370701256364, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 284.1084754795382, Y: 316.53919729900883, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 272.24586613367586, Y: 332.64132447238137, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 260.38325678781354, Y: 348.7434516457538, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 253.32519583421117, Y: 364.757001395114, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 236.4896924503292, Y: 369.5335928379002, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 218.9022840741613, Y: 379.0563585396226, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 211.45461516746292, Y: 394.8924637380669, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 196.06563449224356, Y: 403.2248867816794, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 192.25, Y: 420.3038485013392, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 192.25, Y: 440.3038485013392, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 192.25, Y: 460.3038485013392, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 192.25, Y: 480.3038485013392, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 209.75, Y: 480.3038485013392, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 227.25, Y: 480.3038485013392, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 244.75, Y: 480.3038485013392, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 5.5, Y: 500.3038485013392, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: 58.76170394919782, Y: 415.793554650061, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: 141.0, Y: 460.3038485013392, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: 152.4197864384696, Y: 342.6542699914, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 239.87385217864414, Y: 227.98371474648633, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 262.91455224919434, Y: 80.94513827428614, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 344.0402172860824, Y: 86.79999696664981, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 380.49902324265514, Y: 260.9179864182836, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 250.40102685075294, Y: 378.9185418093336, Width: 18.0, Height: 8
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Text: '90', X: 241.0, Y: 500.3038485013392, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'LMNA, -28.0 ± 1.0
 kcal/mol, AUC: 0.659', X: 118.60106252598888, Y: 513.1038485013391, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 4.999999999999943, 398.49902324265514, 513.1038485013391)
Updated viewBox: -0.25 -5.684341886080802e-14 403.74902324265514 518.1038485013391
Updated SVG: /disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/final_image/LMNA_fold_final_5.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/final_image/LMNA_fold_final_5.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CAGGCCAGCUCCACUCCGCUGUCGCCCACCCGCAUCACCCGGCUGCAGGAGAAGGAGGACCUGCAGGAGCUCAAUGAUCGCUUGGCGGUC', '-structureDBN', '..(((((((........))))..))).(((.((..(....).(((((((..........)))))))((((.........)))).))))).', '-o', '/disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/final_image/LMNA_fold_4.svg', '-title', 'LMNA, -26.9 ± 1.2\n kcal/mol, AUC: 0.665', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,4,8,10,15,18,20,21,22,24,32,35,41,42,44,45,48,49,51,54,55,57,58,62,63,66,67,69,71,75,76,78,80,82,83,84,85,87,88,89', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '6,7,77,47,17,86,56,90,60,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,2,68,5,72,9,73,11,12,13,74,81,19,25,26,28,33,37,43,50,53,59,61', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,70,14,79,16,23,27,29,31,34,36,38,39,40,46,52']
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 56.68920899927983, Y: 304.43252762074496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 74.18920899927983, Y: 304.43252762074496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 91.68920899927983, Y: 304.43252762074496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 91.68920899927983, Y: 284.43252762074496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 91.68920899927983, Y: 264.43252762074496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 85.01089230595687, Y: 248.30964488590206, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 70.86875668222592, Y: 234.1675092621711, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 56.72662105849497, Y: 220.0253736384402, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 42.58448543476399, Y: 205.88323801470924, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 25.112455099401444, Y: 204.8939630203804, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 10.98711956342089, Y: 194.56316416210242, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 4.75, Y: 178.2123584141943, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 8.406430051285923, Y: 161.0985911978773, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 20.78080900649482, Y: 148.72421224266841, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 37.89457622281182, Y: 145.06778219138246, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 54.24538197071996, Y: 151.30490175480335, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 64.5761808289979, Y: 165.43023729078388, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 65.56545582332677, Y: 182.90226762614643, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 79.70759144705772, Y: 197.04440324987738, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 93.84972707078867, Y: 211.1865388736083, Width: 10.5, Height: 8
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Text: 'G', X: 107.99186269451965, Y: 225.32867449733922, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 124.16442581933896, Y: 232.05659557996785, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 130.86757943319242, Y: 248.2394399452031, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 124.18920899927983, Y: 264.43252762074496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 124.18920899927983, Y: 284.43252762074496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 124.18920899927983, Y: 304.43252762074496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 141.68920899927983, Y: 304.43252762074496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 159.18920899927983, Y: 304.43252762074496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 159.18920899927983, Y: 284.43252762074496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 159.18920899927983, Y: 264.43252762074496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 155.37359013269716, Y: 247.35349595930998, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 166.0949310918366, Y: 233.5221866263076, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 174.6065491070844, Y: 215.4237789957311, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 165.7875814173275, Y: 201.27438288902235, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 162.91925513330702, Y: 184.85024499304993, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 166.42034136843657, Y: 168.54926353573555, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 151.79371098870814, Y: 158.94130145570043, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 150.01005503578764, Y: 141.53240077133214, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 162.38444899259594, Y: 129.15800681452382, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 179.79334967696425, Y: 130.94166276744434, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 189.40131175699935, Y: 145.5682931471728, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 206.54583957826853, Y: 142.05905243488556, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 223.69036739953765, Y: 145.56829314717274, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 237.8325030232686, Y: 131.42615752344173, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 251.97463864699955, Y: 117.28402189971078, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 266.1167742707305, Y: 103.14188627597983, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 280.25890989446145, Y: 88.99975065224882, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 294.4010455181924, Y: 74.85761502851778, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 308.54318114192336, Y: 60.715479404786834, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 307.18113262216303, Y: 43.268590383006085, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 314.13929874320286, Y: 27.21141015294927, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 327.8009432255784, Y: 16.274839266894787, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 344.9917704448985, Y: 13.0, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 361.71747593127714, Y: 18.14780425923925, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 374.09182667603363, Y: 30.52215500399575, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 379.2396309352729, Y: 47.247860490374364, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 375.9647916683781, Y: 64.43868770969448, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 365.02822078232373, Y: 78.10033219207003, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 348.9710405522668, Y: 85.05849831310988, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 331.52415153048617, Y: 83.69644979334964, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 317.3820159067552, Y: 97.83858541708062, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 303.23988028302426, Y: 111.98072104081157, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 289.0977446592933, Y: 126.12285666454252, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 274.95560903556236, Y: 140.26499228827353, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 260.8134734118314, Y: 154.40712791200454, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 246.67133778810046, Y: 168.5492635357355, Width: 10.5, Height: 8
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Text: 'G', X: 250.10720782867662, Y: 188.22314640401518, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/final_image/LMNA_fold_6.svg


Text: 'A', X: 268.2056199580909, Y: 196.73475485329604, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 286.3040320875052, Y: 205.24636330257695, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 304.4024442169195, Y: 213.7579717518578, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 320.76597052867567, Y: 207.55438547159275, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 338.02852864647275, Y: 210.4272870226217, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 351.50084502810466, Y: 221.59626940265264, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 357.52324326121584, Y: 238.027343488483, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 354.4597738820913, Y: 255.2571035406542, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 343.1426105354981, Y: 268.60518542078796, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 326.64599484262976, Y: 274.4456602965182, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 309.4511365394152, Y: 271.19199712639727, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 296.2289189070595, Y: 259.72803459266356, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 290.57108048683807, Y: 243.16789146215606, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 272.4726683574238, Y: 234.65628301287515, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 254.37425622800947, Y: 226.1446745635943, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 236.27584409859514, Y: 217.63306611431338, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 221.33559198741867, Y: 226.74563253955748, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 204.01646150677118, Y: 229.25515827050876, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 195.5048434915234, Y: 247.35356590108526, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 191.68920899927983, Y: 264.43252762074496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 191.68920899927983, Y: 284.43252762074496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 191.68920899927983, Y: 304.43252762074496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 209.18920899927983, Y: 304.43252762074496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 57.43920899927983, Y: 324.43252762074496, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: 14.61707526892583, Y: 223.7221294457818, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: 104.2418626945196, Y: 197.04440324987732, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: 135.55986962547348, Y: 262.23893101675594, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 186.42623656036628, Y: 113.84793116880041, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 283.704411236364, Y: 39.97367560913716, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 336.9289088279573, Y: 101.47819376924801, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 304.04471085170513, Y: 194.0477579762916, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 273.80308445257094, Y: 258.3511644706943, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 205.43920899927983, Y: 324.43252762074496, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'LMNA, -26.9 ± 1.2
 kcal/mol, AUC: 0.665', X: 125.99481546763644, Y: 337.232527620745, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 389.7396309352729, 337.232527620745)
Updated viewBox: -0.25 0.0 394.9896309352729 342.232527620745
Updated SVG: /disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/final_image/LMNA_fold_final_4.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/final_image/LMNA_fold_final_4.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CAGGCCAGCUCCACUCCGCUGUCGCCCACCCGCAUCACCCGGCUGCAGGAGAAGGAGGACCUGCAGGAGCUCAAUGAUCGCUUGGCGGUC', '-structureDBN', '......((((((...(((.((..((......))..))..))).((((((..........))))))))))))....((((((...))))))', '-o', '/disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/final_image/LMNA_fold_6.svg', '-title', 'LMNA, -25.7 ± 0.9\n kcal/mol, AUC: 0.604', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,4,8,10,15,18,20,21,22,24,32,35,41,42,44,45,48,49,51,54,55,57,58,62,63,66,67,69,71,75,76,78,80,82,83,84,85,87,88,89', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '6,7,77,47,17,86,56,90,60,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,2,68,5,72,9,73,11,12,13,74,81,19,25,26,28,33,37,43,50,53,59,61', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,70,14,79,16,23,27,29,31,34,36,38,39,40,46,52']
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 28.58322148911813, Y: 357.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 46.08322148911813, Y: 357.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 63.58322148911813, Y: 357.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 81.08322148911813, Y: 357.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 98.58322148911813, Y: 357.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 116.08322148911813, Y: 357.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 133.58322148911813, Y: 357.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 133.58322148911813, Y: 337.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 133.58322148911813, Y: 317.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 133.58322148911813, Y: 297.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 133.58322148911813, Y: 277.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 133.58322148911813, Y: 257.7915805668627, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 121.10726370653171, Y: 247.25855246821158, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 114.60566136974597, Y: 232.28112376452037, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 115.43060205841238, Y: 215.97426396932883, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 123.41051659690592, Y: 201.7294344695352, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 116.38371510129085, Y: 183.00447623884162, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 109.35691360567577, Y: 164.27951800814793, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 96.30853323894468, Y: 154.02091617860998, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 92.36517370185925, Y: 137.89798042691854, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 78.2230380781283, Y: 123.75584480318759, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 60.92075560144713, Y: 121.13265124711376, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 48.54638443892949, Y: 108.75828008459615, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 45.923190882855664, Y: 91.45599760791492, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 31.781055259124713, Y: 77.31386198418397, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 14.848706891664904, Y: 72.89291971108719, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 4.75, Y: 58.600779530718455, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 6.237991249216634, Y: 41.16417912062332, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 18.612342784126895, Y: 28.789827585713056, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 36.04894319422198, Y: 27.30183633649642, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 50.341083374590795, Y: 37.40054322816138, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 54.762025647687494, Y: 54.33289159562116, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 68.90416127141847, Y: 68.47502721935211, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 86.20644374809963, Y: 71.09822077542594, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 98.58081491061725, Y: 83.47259193794355, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 101.20400846669108, Y: 100.77487441462472, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 115.34614409042203, Y: 114.91701003835573, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 132.78229117793785, Y: 119.76565799944512, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 142.58191619547495, Y: 134.98064935086308, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 139.78497073055294, Y: 152.8609655777734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 146.81177222616802, Y: 171.58592380846704, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 153.8385737217831, Y: 190.31088203916073, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 170.2229112304709, Y: 196.459335861172, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 181.7358626460319, Y: 209.63893940994893, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 201.7358626460319, Y: 209.63893940994893, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 221.7358626460319, Y: 209.63893940994893, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 241.73586264603193, Y: 209.63893940994893, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 261.73586264603193, Y: 209.63893940994893, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 281.73586264603193, Y: 209.63893940994893, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 293.1095624393146, Y: 196.33901212741097, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 309.38386991553216, Y: 189.90503754881303, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 326.77743480763604, Y: 191.83195556800405, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 341.2488463615409, Y: 201.67204501607438, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 349.43565883115923, Y: 217.13895208555073, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 349.43565883115923, Y: 234.63892673434708, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 341.2488463615409, Y: 250.10583380382337, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 326.77743480763604, Y: 259.9459232518937, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 309.38386991553216, Y: 261.8728412710848, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 293.1095624393146, Y: 255.43886669248678, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 281.73586264603193, Y: 242.13893940994893, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 261.73586264603193, Y: 242.13893940994893, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 241.73586264603193, Y: 242.13893940994893, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 221.7358626460319, Y: 242.13893940994893, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 201.7358626460319, Y: 242.13893940994893, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 181.7358626460319, Y: 242.13893940994893, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 166.08322148911813, Y: 257.7915805668627, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 166.08322148911813, Y: 277.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 166.08322148911813, Y: 297.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 166.08322148911813, Y: 317.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 166.08322148911813, Y: 337.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 166.08322148911813, Y: 357.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 183.58322148911813, Y: 357.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 201.08322148911813, Y: 357.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 218.58322148911813, Y: 357.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 236.08322148911816, Y: 357.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 253.58322148911816, Y: 357.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 253.58322148911816, Y: 337.79158056686265, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 253.58322148911816, Y: 317.7915805668627, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 253.58322148911816, Y: 297.7915805668627, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/final_image/LMNA_fold_2.svg

Text: 'G', X: 253.58322148911816, Y: 277.7915805668627, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 253.58322148911816, Y: 257.7915805668627, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 254.52342262767525, Y: 240.31683267994123, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 269.83322148911816, Y: 231.83975472143612, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 285.14302035056096, Y: 240.31683267994123, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 286.08322148911816, Y: 257.7915805668627, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 286.08322148911816, Y: 277.7915805668627, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 286.08322148911816, Y: 297.7915805668627, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 286.08322148911816, Y: 317.7915805668627, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 286.08322148911816, Y: 337.7915805668627, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 286.08322148911816, Y: 357.7915805668627, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 29.33322148911813, Y: 377.79158056686265, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: 109.83322148911813, Y: 297.79158056686265, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: 73.04862861681214, Y: 150.455156626813, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: 37.537178969662676, Y: 8.0, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 155.2351677521705, Y: 147.26164112467472, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 277.74052055687287, Y: 180.06025708490031, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 271.88566186450936, Y: 261.1859221217884, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 182.33322148911813, Y: 337.79158056686265, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 229.83322148911816, Y: 277.7915805668627, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 282.33322148911816, Y: 377.7915805668627, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'LMNA, -25.7 ± 0.9
 kcal/mol, AUC: 0.604', X: 111.09282941557962, Y: 390.5915805668627, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 359.93565883115923, 390.5915805668627)
Updated viewBox: -0.25 -5.0 365.18565883115923 400.5915805668627
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Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/final_image/LMNA_fold_final_6.svg
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'A', X: 317.47243155805154, Y: 39.82192189564944, Width: 10.5, Height: 8
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Text: 'U', X: 324.5006718087365, Y: 55.84857769062626, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 325.2207426410327, Y: 73.3337529825269, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 319.53407887815706, Y: 89.88403129559504, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 308.21908591296005, Y: 103.23396729505066, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 292.82458954408924, Y: 111.55618686322089, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 275.45782865420483, Y: 113.71152284296898, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 258.49601084634526, Y: 109.40494721435198, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 244.3538752226143, Y: 123.54708283808293, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 230.21173959888336, Y: 137.68921846181388, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 223.49623387098117, Y: 153.84937573199477, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 207.33607660080025, Y: 160.56488145989704, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 193.1939409770693, Y: 174.707017083628, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 179.05180535333835, Y: 188.849152707359, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 164.9096697296074, Y: 202.9912883310899, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 162.28647617353357, Y: 220.29357080777106, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 149.91210501101597, Y: 232.66794197028872, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 132.6098225343348, Y: 235.29113552636255, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 118.4676869106039, Y: 249.4332711500935, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 113.26267597665645, Y: 267.3415735157702, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 97.24128153209799, Y: 276.88695734749143, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 87.11448274694027, Y: 294.13363663264454, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 76.98768396178255, Y: 311.38031591779765, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 66.86088517662483, Y: 328.6269952029507, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 71.4521846771225, Y: 345.5139715130167, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 66.86087639700813, Y: 362.4009454360425, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 54.351092338561614, Y: 374.6384003516301, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 54.351092338561614, Y: 394.63840035163, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 54.351092338561614, Y: 414.63840035163, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 54.351092338561614, Y: 434.63840035163, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 71.85109233856161, Y: 434.63840035163, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 89.35109233856161, Y: 434.63840035163, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 106.85109233856161, Y: 434.63840035163, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 124.35109233856161, Y: 434.63840035163, Width: 10.5, Height: 8
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Text: 'U', X: 264.3510923385616, Y: 434.6384003516301, Width: 10.5, Height: 8
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Text: 'G', X: 281.8510923385616, Y: 434.6384003516301, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'G', X: 281.8510923385616, Y: 354.6384003516301, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 281.8510923385616, Y: 334.6384003516301, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'G', X: 314.3510923385616, Y: 374.6384003516301, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 314.3510923385616, Y: 394.6384003516301, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 314.3510923385616, Y: 414.6384003516301, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 314.3510923385616, Y: 434.6384003516301, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Text: '90', X: 310.6010923385616, Y: 454.6384003516301, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'LMNA, -27.4 ± 1.2
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Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/9938ef0f-d6a5-45a3-8bfc-580d3fa9fc37/final_image/LMNA_fold_final_2.svg
