Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_4.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 156.09 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 156.09 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 156.09 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 169.62 MB
Based on canonical annotations, the following gene is in your area of interest: POLRMT(-)
write fasta - Elapsed time since the previous call: 0.83 seconds
write fasta - Current memory usage: 169.62 MB
Length of region: 115 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.20 seconds
write dat - Current memory usage: 173.18 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/fasta/POLRMT.fasta" "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/ct/POLRMT.ct" --SHAPE "POLRMT.dat"

fold - Elapsed time since the previous call: 0.17 seconds
fold - Current memory usage: 173.18 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/ct/POLRMT.ct" "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/fold_FE/POLRMT.txt" -sh "POLRMT.dat"

efn2 - Elapsed time since the previous call: 0.64 seconds
efn2 - Current memory usage: 173.18 MB
This region has 11 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/ct/POLRMT.ct" 1 "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/fold_dbn/POLRMT_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 173.18 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/ct/POLRMT.ct" 2 "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/fold_dbn/POLRMT_temp2.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.18 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/ct/POLRMT.ct" 3 "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/fold_dbn/POLRMT_temp3.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.18 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/ct/POLRMT.ct" 4 "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/fold_dbn/POLRMT_temp4.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 173.18 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/ct/POLRMT.ct" 5 "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/fold_dbn/POLRMT_temp5.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 173.18 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/ct/POLRMT.ct" 6 "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/fold_dbn/POLRMT_temp6.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 173.18 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/ct/POLRMT.ct" 7 "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/fold_dbn/POLRMT_temp7.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.18 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/ct/POLRMT.ct" 8 "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/fold_dbn/POLRMT_temp8.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.18 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/ct/POLRMT.ct" 9 "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/fold_dbn/POLRMT_temp9.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.18 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/ct/POLRMT.ct" 10 "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/fold_dbn/POLRMT_temp10.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 173.18 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/ct/POLRMT.ct" 11 "/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/fold_dbn/POLRMT_temp11.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 173.18 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CCGCAAGGUGGUGAAGCAGACGGUGAUGACGGUGGUGUACGGGGUCACGCGCUAUGGCGGGCGCCUGCAGAUUGAGAAGCGCCUCCGGGAGCUGAGCGACUUUCCCCAGGAGUUC', '-structureDBN', '......(((.((..(((...(((.(((..((........))..))).(((......)))(((((((........))..))))).)))...)))..)).))).(((...)))....', '-o', '/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_4.svg', '-title', 'POLRMT, -34.0 ± 1.4\n kcal/mol, AUC: 0.647', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,7,8,9,10,11,12,13,16,19,22,23,24,25,27,28,31,32,33,34,35,36,37,38,41,42,43,44,45,49,51,53,55,56,57,59,60,61,63,66,67,70,72,73,74,76,79,81,84,87,88,89,91,93,94,96,98,101,102,103,109,110,112,113,114', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '64,1,97,105,15,82,83,115,29,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,2,75,77,14,78,17,21,85,86,90,95,99,100,39,106,108,50,52,58,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '4,5,6,68,69,71,80,18,20,26,92,40,104,107,46,47,48,111,54']
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Text: 'A', X: 406.0756304508751, Y: 71.81376395767688, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'C', X: 217.34151404486312, Y: 168.24796497839748, Width: 10.5, Height: 8
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Text: 'C', X: 217.34151404486312, Y: 188.24796497839748, Width: 10.5, Height: 8
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Text: 'G', X: 217.34151404486312, Y: 208.24796497839748, Width: 10.5, Height: 8
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Text: 'G', X: 229.8513002982145, Y: 220.48542363207144, Width: 10.5, Height: 8
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Text: 'G', X: 234.44260638342513, Y: 237.37240248670466, Width: 10.5, Height: 8
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Text: 'A', X: 229.85130029821454, Y: 254.2593813413379, Width: 10.5, Height: 8
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Text: 'G', X: 217.34151404486312, Y: 266.4968399950118, Width: 10.5, Height: 8
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Text: 'C', X: 217.34151404486312, Y: 286.4968399950118, Width: 10.5, Height: 8
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Text: 'U', X: 217.34151404486312, Y: 306.4968399950118, Width: 10.5, Height: 8
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Text: 'G', X: 227.7211973622649, Y: 320.5862792161429, Width: 10.5, Height: 8
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Text: 'A', X: 227.7211973622649, Y: 338.08628274001387, Width: 10.5, Height: 8
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Text: 'G', X: 217.34151404486312, Y: 352.175721961145, Width: 10.5, Height: 8
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Text: 'C', X: 217.34151404486312, Y: 372.175721961145, Width: 10.5, Height: 8
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Text: 'G', X: 224.01989119635238, Y: 388.3512583912277, Width: 10.5, Height: 8
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Text: 'A', X: 217.34151404486312, Y: 404.52679482131043, Width: 10.5, Height: 8
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Text: 'C', X: 217.34151404486312, Y: 424.52679482131043, Width: 10.5, Height: 8
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Text: 'U', X: 217.34151404486312, Y: 444.52679482131043, Width: 10.5, Height: 8
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Text: 'U', X: 234.84151404486312, Y: 444.52679482131043, Width: 10.5, Height: 8
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Text: 'U', X: 252.34151404486312, Y: 444.52679482131043, Width: 10.5, Height: 8
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Text: 'C', X: 252.34151404486312, Y: 424.52679482131043, Width: 10.5, Height: 8
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Text: 'C', X: 252.34151404486312, Y: 404.52679482131043, Width: 10.5, Height: 8
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Text: 'C', X: 253.28171518342026, Y: 387.05204693438895, Width: 10.5, Height: 8
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Text: 'C', X: 268.5915140448631, Y: 378.57496897588396, Width: 10.5, Height: 8
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Text: 'A', X: 283.901312906306, Y: 387.05204693438907, Width: 10.5, Height: 8
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Text: 'G', X: 284.8415140448631, Y: 404.52679482131043, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 284.8415140448631, Y: 424.52679482131043, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 284.8415140448631, Y: 444.52679482131043, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 302.3415140448631, Y: 444.52679482131043, Width: 10.5, Height: 8
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Text: 'U', X: 319.8415140448631, Y: 444.5267948213105, Width: 10.5, Height: 8
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Text: 'U', X: 337.3415140448631, Y: 444.5267948213105, Width: 10.5, Height: 8
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Text: 'C', X: 354.8415140448631, Y: 444.5267948213105, Width: 10.5, Height: 8
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Text: '1', X: 80.59151404486312, Y: 464.52679482131043, Width: 9.0, Height: 8
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Text: '10', X: 154.41313689337386, Y: 388.3512583912277, Width: 18.0, Height: 8
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Text: '20', X: 151.33504455763267, Y: 210.35863157188595, Width: 18.0, Height: 8
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Text: '30', X: 66.1673602414503, Y: 138.8290984864181, Width: 18.0, Height: 8
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Text: '40', X: 60.08847377748134, Y: 64.20455581241549, Width: 18.0, Height: 8
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Text: '50', X: 187.10824113038674, Y: 47.359390314649715, Width: 18.0, Height: 8
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Text: '60', X: 253.25733688519887, Y: 106.49645572989743, Width: 18.0, Height: 8
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Text: '70', X: 399.5036534628773, Y: 41.868055608912755, Width: 18.0, Height: 8
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Text: '80', X: 294.90158632026044, Y: 166.9378927030001, Width: 18.0, Height: 8
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Text: '90', X: 243.34798353209356, Y: 264.3861734015235, Width: 18.0, Height: 8
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Text: '100', X: 229.09151404486312, Y: 424.52679482131043, Width: 27.0, Height: 8
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Text: '110', X: 296.5915140448631, Y: 424.52679482131043, Width: 27.0, Height: 8
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Text: '115', X: 346.5915140448631, Y: 464.5267948213105, Width: 27.0, Height: 8
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Text: 'POLRMT, -34.0 ± 1.4
 kcal/mol, AUC: 0.647', X: 141.24103025108053, Y: 477.3267948213105, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 420.23206050216106, 477.3267948213105)
Updated viewBox: -0.25 0.0 425.48206050216106 482.3267948213105
Updated SVG: /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_final_4.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_final_4.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CCGCAAGGUGGUGAAGCAGACGGUGAUGACGGUGGUGUACGGGGUCACGCGCUAUGGCGGGCGCCUGCAGAUUGAGAAGCGCCUCCGGGAGCUGAGCGACUUUCCCCAGGAGUUC', '-structureDBN', '((((...))))...........(((((..((........))..)))))..(((.(((.((((((((........))..)))))))))..))).((((..((......))..))))', '-o', '/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_7.svg', '-title', 'POLRMT, -34.4 ± 1.3\n kcal/mol, AUC: 0.59', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,7,8,9,10,11,12,13,16,19,22,23,24,25,27,28,31,32,33,34,35,36,37,38,41,42,43,44,45,49,51,53,55,56,57,59,60,61,63,66,67,70,72,73,74,76,79,81,84,87,88,89,91,93,94,96,98,101,102,103,109,110,112,113,114', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '64,1,97,105,15,82,83,115,29,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,2,75,77,14,78,17,21,85,86,90,95,99,100,39,106,108,50,52,58,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '4,5,6,68,69,71,80,18,20,26,92,40,104,107,46,47,48,111,54']Output file: /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_7.svg


Warning: Font Verdana not found. Using default font.
Text: 'C', X: 4.75, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'C', X: 4.75, Y: 324.0118387736469, Width: 10.5, Height: 8
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Text: 'G', X: 4.75, Y: 304.0118387736469, Width: 10.5, Height: 8
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Text: 'C', X: 4.75, Y: 284.0118387736469, Width: 10.5, Height: 8
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Text: 'A', X: 5.690201138557143, Y: 266.5370908867254, Width: 10.5, Height: 8
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Text: 'A', X: 21.0, Y: 258.06001292822043, Width: 10.5, Height: 8
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Text: 'G', X: 36.30979886144286, Y: 266.5370908867254, Width: 10.5, Height: 8
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Text: 'G', X: 37.25, Y: 284.0118387736469, Width: 10.5, Height: 8
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Text: 'U', X: 37.25, Y: 304.0118387736469, Width: 10.5, Height: 8
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Text: 'G', X: 37.25, Y: 324.0118387736469, Width: 10.5, Height: 8
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Text: 'G', X: 37.25, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'U', X: 54.75, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'G', X: 72.25, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'A', X: 89.75, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'A', X: 107.25, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'G', X: 124.75, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'C', X: 142.25, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'A', X: 159.75, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'G', X: 177.25, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'A', X: 194.75, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'C', X: 212.25, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'G', X: 229.75, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'G', X: 247.25, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'U', X: 247.25, Y: 324.0118387736469, Width: 10.5, Height: 8
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Text: 'G', X: 247.25, Y: 304.0118387736469, Width: 10.5, Height: 8
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Text: 'A', X: 247.25, Y: 284.0118387736469, Width: 10.5, Height: 8
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Text: 'U', X: 247.25, Y: 264.0118387736469, Width: 10.5, Height: 8
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Text: 'G', X: 236.87031668259823, Y: 249.92239955251588, Width: 10.5, Height: 8
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Text: 'A', X: 236.87031668259823, Y: 232.4223960286449, Width: 10.5, Height: 8
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Text: 'C', X: 247.25, Y: 218.33295680751385, Width: 10.5, Height: 8
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Text: 'G', X: 247.25, Y: 198.33295680751385, Width: 10.5, Height: 8
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Text: 'G', X: 235.5949319257163, Y: 185.27884261933374, Width: 10.5, Height: 8
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Text: 'U', X: 232.9117893094517, Y: 167.98574414754395, Width: 10.5, Height: 8
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Text: 'G', X: 240.06324539329535, Y: 152.01366898696799, Width: 10.5, Height: 8
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Text: 'G', X: 254.74999272779968, Y: 142.4978946208607, Width: 10.5, Height: 8
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Text: 'U', X: 272.2500072722003, Y: 142.4978946208607, Width: 10.5, Height: 8
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Text: 'G', X: 286.93675460670465, Y: 152.01366898696799, Width: 10.5, Height: 8
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Text: 'U', X: 294.0882106905483, Y: 167.98574414754395, Width: 10.5, Height: 8
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Text: 'A', X: 291.4050680742837, Y: 185.27884261933374, Width: 10.5, Height: 8
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Text: 'C', X: 279.75, Y: 198.33295680751385, Width: 10.5, Height: 8
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Text: 'G', X: 279.75, Y: 218.33295680751385, Width: 10.5, Height: 8
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Text: 'G', X: 290.12968331740177, Y: 232.4223960286449, Width: 10.5, Height: 8
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Text: 'G', X: 290.12968331740177, Y: 249.92239955251588, Width: 10.5, Height: 8
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Text: 'G', X: 279.75, Y: 264.0118387736469, Width: 10.5, Height: 8
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Text: 'U', X: 279.75, Y: 284.0118387736469, Width: 10.5, Height: 8
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Text: 'C', X: 279.75, Y: 304.0118387736469, Width: 10.5, Height: 8
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Text: 'A', X: 279.75, Y: 324.0118387736469, Width: 10.5, Height: 8
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Text: 'C', X: 279.75, Y: 344.01183877364696, Width: 10.5, Height: 8
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Text: 'G', X: 297.25, Y: 344.01183877364696, Width: 10.5, Height: 8
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Text: 'C', X: 314.75, Y: 344.01183877364696, Width: 10.5, Height: 8
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Text: 'G', X: 332.25, Y: 344.01183877364696, Width: 10.5, Height: 8
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Text: 'C', X: 332.25, Y: 324.01183877364696, Width: 10.5, Height: 8
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Text: 'U', X: 332.25, Y: 304.01183877364696, Width: 10.5, Height: 8
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Text: 'A', X: 323.452869537767, Y: 288.8837880517427, Width: 10.5, Height: 8
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Text: 'U', X: 326.50954010935607, Y: 271.6528801235215, Width: 10.5, Height: 8
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Text: 'G', X: 319.6300649096382, Y: 252.8732949050864, Width: 10.5, Height: 8
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Text: 'G', X: 312.7505897099203, Y: 234.0937096866513, Width: 10.5, Height: 8
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Text: 'C', X: 303.43205469719106, Y: 220.26792798844073, Width: 10.5, Height: 8
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Text: 'G', X: 307.4262597008394, Y: 204.0804741819007, Width: 10.5, Height: 8
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Text: 'G', X: 307.4262597008394, Y: 184.0804741819007, Width: 10.5, Height: 8
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Text: 'G', X: 307.4262597008394, Y: 164.0804741819007, Width: 10.5, Height: 8
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Text: 'C', X: 307.4262597008394, Y: 144.0804741819007, Width: 10.5, Height: 8
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Text: 'G', X: 307.4262597008394, Y: 124.08047418190071, Width: 10.5, Height: 8
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Text: 'C', X: 307.4262597008394, Y: 104.08047418190074, Width: 10.5, Height: 8
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Text: 'C', X: 300.7479430075164, Y: 87.95759144705778, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 286.6058073837855, Y: 73.81545582332683, Width: 10.5, Height: 8
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Text: 'G', X: 269.133777048423, Y: 72.82618082899796, Width: 10.5, Height: 8
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Text: 'C', X: 255.0084415124424, Y: 62.49538197072002, Width: 10.5, Height: 8
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Text: 'A', X: 248.7713219490215, Y: 46.14457622281191, Width: 10.5, Height: 8
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Text: 'G', X: 252.42775200030746, Y: 29.030809006494906, Width: 10.5, Height: 8
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Text: 'A', X: 264.80213095551636, Y: 16.656430051285952, Width: 10.5, Height: 8
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Text: 'U', X: 281.91589817183336, Y: 13.0, Width: 10.5, Height: 8
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Text: 'U', X: 298.2667039197415, Y: 19.237119563420947, Width: 10.5, Height: 8
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Text: 'G', X: 308.5975027780194, Y: 33.36245509940147, Width: 10.5, Height: 8
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Text: 'A', X: 309.5867777723483, Y: 50.83448543476402, Width: 10.5, Height: 8
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Text: 'G', X: 323.72891339607924, Y: 64.97662105849497, Width: 10.5, Height: 8
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Text: 'A', X: 339.90147652089854, Y: 71.70454214112351, Width: 10.5, Height: 8
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Text: 'A', X: 346.60463013475203, Y: 87.88738650635878, Width: 10.5, Height: 8
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Text: 'G', X: 339.9262597008394, Y: 104.08047418190074, Width: 10.5, Height: 8
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Text: 'C', X: 339.9262597008394, Y: 124.08047418190071, Width: 10.5, Height: 8
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Text: 'G', X: 339.9262597008394, Y: 144.0804741819007, Width: 10.5, Height: 8
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Text: 'C', X: 339.9262597008394, Y: 164.0804741819007, Width: 10.5, Height: 8
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Text: 'C', X: 339.9262597008394, Y: 184.0804741819007, Width: 10.5, Height: 8
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Text: 'U', X: 339.9262597008394, Y: 204.0804741819007, Width: 10.5, Height: 8
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Text: 'C', X: 343.26741568987734, Y: 222.91456248710975, Width: 10.5, Height: 8
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Text: 'C', X: 350.1468908895952, Y: 241.69414770554485, Width: 10.5, Height: 8
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Text: 'G', X: 357.0263660893131, Y: 260.4737329239799, Width: 10.5, Height: 8
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Text: 'G', X: 370.4903810551193, Y: 271.6527445529455, Width: 10.5, Height: 8
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Text: 'G', X: 373.54714415869086, Y: 288.88371084415047, Width: 10.5, Height: 8
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Text: 'A', X: 364.75, Y: 304.01183877364696, Width: 10.5, Height: 8
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Text: 'G', X: 364.75, Y: 324.01183877364696, Width: 10.5, Height: 8
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Text: 'C', X: 364.75, Y: 344.01183877364696, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 382.25, Y: 344.01183877364696, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 399.75, Y: 344.01183877364696, Width: 10.5, Height: 8
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Text: 'A', X: 399.75, Y: 324.01183877364696, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 399.75, Y: 304.01183877364696, Width: 10.5, Height: 8
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Text: 'C', X: 399.75, Y: 284.01183877364696, Width: 10.5, Height: 8
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Text: 'G', X: 389.37031668259823, Y: 269.9223995525159, Width: 10.5, Height: 8
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Text: 'A', X: 389.37031668259823, Y: 252.4223960286449, Width: 10.5, Height: 8
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Text: 'U', X: 390.90309990849715, Y: 203.23390019492908, Width: 10.5, Height: 8
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Text: 'U', X: 393.8683050233931, Y: 185.98696683141006, Width: 10.5, Height: 8
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Text: 'C', X: 407.2500121168788, Y: 174.70959714325895, Width: 10.5, Height: 8
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Text: 'C', X: 424.7499878831212, Y: 174.70959714325895, Width: 10.5, Height: 8
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Text: 'C', X: 438.13169497660687, Y: 185.98696683140994, Width: 10.5, Height: 8
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Text: 'C', X: 441.09690009150285, Y: 203.23390019492908, Width: 10.5, Height: 8
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Text: 'A', X: 432.25, Y: 218.33295680751385, Width: 10.5, Height: 8
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Text: 'G', X: 432.25, Y: 238.33295680751385, Width: 10.5, Height: 8
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Text: 'G', X: 442.62968331740177, Y: 252.4223960286449, Width: 10.5, Height: 8
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Text: 'A', X: 442.62968331740177, Y: 269.9223995525159, Width: 10.5, Height: 8
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Text: 'G', X: 432.25, Y: 284.01183877364696, Width: 10.5, Height: 8
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Text: 'U', X: 432.25, Y: 304.01183877364696, Width: 10.5, Height: 8
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Text: 'U', X: 432.25, Y: 324.01183877364696, Width: 10.5, Height: 8
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Text: 'C', X: 432.25, Y: 344.01183877364696, Width: 10.5, Height: 8
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Text: '1', X: 5.5, Y: 364.0118387736469, Width: 9.0, Height: 8
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Text: '10', X: 53.5, Y: 324.0118387736469, Width: 18.0, Height: 8
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Text: '20', X: 191.0, Y: 364.0118387736469, Width: 18.0, Height: 8
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Text: '30', X: 223.75143489713486, Y: 215.17160007694753, Width: 18.0, Height: 8
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Text: '40', X: 295.350696232184, Y: 193.2782010933632, Width: 18.0, Height: 8
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Text: '50', X: 311.0, Y: 364.01183877364696, Width: 18.0, Height: 8
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Text: '60', X: 283.6762597008394, Y: 184.0804741819007, Width: 18.0, Height: 8
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Text: '70', X: 231.10642260675212, Y: 19.47840703928381, Width: 18.0, Height: 8
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Text: '80', X: 356.1762597008394, Y: 124.08047418190071, Width: 18.0, Height: 8
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Text: '90', X: 380.92298764559456, Y: 305.7652820357705, Width: 18.0, Height: 8
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Text: '100', X: 371.75143489713486, Y: 235.17160007694753, Width: 27.0, Height: 8
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Text: '110', X: 453.38026567961225, Y: 246.17917010794838, Width: 27.0, Height: 8
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Text: '115', X: 424.0, Y: 364.01183877364696, Width: 27.0, Height: 8
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Text: 'POLRMT, -34.4 ± 1.3
 kcal/mol, AUC: 0.59', X: 159.93984165870089, Y: 376.81183877364697, Width: 138.0, Height: 23
Calculated bounding box: (4.75, 5.0, 480.38026567961225, 376.81183877364697)
Updated viewBox: -0.25 0.0 485.63026567961225 381.81183877364697/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_6.svg


Updated SVG: /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_final_7.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_final_7.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CCGCAAGGUGGUGAAGCAGACGGUGAUGACGGUGGUGUACGGGGUCACGCGCUAUGGCGGGCGCCUGCAGAUUGAGAAGCGCCUCCGGGAGCUGAGCGACUUUCCCCAGGAGUUC', '-structureDBN', '((((...))))....(((.((.((....)).))..)))..((((...((((((.(((.((((((((........))..)))))))))..)))...))).....))))........', '-o', '/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_6.svg', '-title', 'POLRMT, -33.8 ± 1.7\n kcal/mol, AUC: 0.607', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,7,8,9,10,11,12,13,16,19,22,23,24,25,27,28,31,32,33,34,35,36,37,38,41,42,43,44,45,49,51,53,55,56,57,59,60,61,63,66,67,70,72,73,74,76,79,81,84,87,88,89,91,93,94,96,98,101,102,103,109,110,112,113,114', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '64,1,97,105,15,82,83,115,29,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,2,75,77,14,78,17,21,85,86,90,95,99,100,39,106,108,50,52,58,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '4,5,6,68,69,71,80,18,20,26,92,40,104,107,46,47,48,111,54']
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Text: 'C', X: 175.75804275468045, Y: 224.48741140699926, Width: 10.5, Height: 8
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Text: 'A', X: 176.6982438932376, Y: 147.0126635200778, Width: 10.5, Height: 8
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Text: 'A', X: 192.00804275468045, Y: 138.5355855615727, Width: 10.5, Height: 8
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Text: 'G', X: 207.3178416161233, Y: 147.0126635200778, Width: 10.5, Height: 8
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Text: 'G', X: 208.25804275468045, Y: 164.48741140699923, Width: 10.5, Height: 8
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Text: 'U', X: 208.25804275468045, Y: 184.48741140699923, Width: 10.5, Height: 8
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Text: 'G', X: 208.25804275468045, Y: 204.48741140699926, Width: 10.5, Height: 8
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Text: 'G', X: 208.25804275468045, Y: 224.48741140699926, Width: 10.5, Height: 8
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Text: 'U', X: 225.75804275468045, Y: 224.48741140699926, Width: 10.5, Height: 8
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Text: 'G', X: 243.25804275468045, Y: 224.48741140699926, Width: 10.5, Height: 8
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Text: 'A', X: 260.75804275468045, Y: 224.48741140699926, Width: 10.5, Height: 8
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Text: 'A', X: 278.25804275468045, Y: 224.48741140699926, Width: 10.5, Height: 8
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Text: 'G', X: 295.75804275468045, Y: 224.48741140699926, Width: 10.5, Height: 8
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Text: 'C', X: 295.75804275468045, Y: 204.48741140699926, Width: 10.5, Height: 8
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Text: 'G', X: 286.96091229244746, Y: 169.35936068509506, Width: 10.5, Height: 8
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Text: 'A', X: 290.0175828640365, Y: 152.12845275687386, Width: 10.5, Height: 8
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Text: 'C', X: 283.1381076643186, Y: 133.34886753843875, Width: 10.5, Height: 8
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Text: 'G', X: 271.30330375722474, Y: 120.45759852255594, Width: 10.5, Height: 8
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Text: 'G', X: 255.90388542276315, Y: 69.32233062111541, Width: 10.5, Height: 8
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Text: 'A', X: 261.61021090124126, Y: 52.77877897310893, Width: 10.5, Height: 8
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Text: 'G', X: 293.085039650981, Y: 55.701710091813055, Width: 10.5, Height: 8
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Text: 'A', X: 295.64739963539307, Y: 73.01313877077749, Width: 10.5, Height: 8
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Text: 'C', X: 302.5269406519549, Y: 91.79269987857353, Width: 10.5, Height: 8
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Text: 'G', X: 314.36181738008077, Y: 104.68400287051588, Width: 10.5, Height: 8
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Text: 'G', X: 313.6549336442757, Y: 122.16972033889715, Width: 10.5, Height: 8
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Text: 'U', X: 320.53440884399356, Y: 140.94930555733225, Width: 10.5, Height: 8
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Text: 'G', X: 333.99842380979976, Y: 152.12831718629775, Width: 10.5, Height: 8
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Text: 'G', X: 337.0551869133713, Y: 169.3592834775028, Width: 10.5, Height: 8
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Text: 'U', X: 328.25804275468045, Y: 184.48741140699929, Width: 10.5, Height: 8
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Text: 'G', X: 328.25804275468045, Y: 204.48741140699929, Width: 10.5, Height: 8
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Text: 'U', X: 328.25804275468045, Y: 224.48741140699929, Width: 10.5, Height: 8
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Text: 'A', X: 345.75804275468045, Y: 224.48741140699929, Width: 10.5, Height: 8
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Text: 'C', X: 363.25804275468045, Y: 224.48741140699929, Width: 10.5, Height: 8
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Text: 'G', X: 380.75804275468045, Y: 224.48741140699929, Width: 10.5, Height: 8
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Text: 'G', X: 380.75804275468045, Y: 204.48741140699929, Width: 10.5, Height: 8
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Text: 'G', X: 380.75804275468045, Y: 184.48741140699929, Width: 10.5, Height: 8
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Text: 'G', X: 380.75804275468045, Y: 164.48741140699929, Width: 10.5, Height: 8
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Text: 'U', X: 366.9349599650679, Y: 153.75556498276507, Width: 10.5, Height: 8
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Text: 'C', X: 359.23941747231925, Y: 138.03841602934062, Width: 10.5, Height: 8
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Text: 'A', X: 359.23942036126186, Y: 120.53841187271757, Width: 10.5, Height: 8
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Text: 'C', X: 366.93496804325923, Y: 104.82126546009118, Width: 10.5, Height: 8
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Text: 'G', X: 358.1400673915226, Y: 86.85881232790231, Width: 10.5, Height: 8
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Text: 'C', X: 349.345166739786, Y: 68.89635919571342, Width: 10.5, Height: 8
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Text: 'G', X: 335.7618387736469, Y: 60.42298764559453, Width: 10.5, Height: 8
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Text: 'C', X: 315.7618387736469, Y: 60.42298764559453, Width: 10.5, Height: 8
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Text: 'U', X: 295.7618387736469, Y: 60.42298764559453, Width: 10.5, Height: 8
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Text: 'A', X: 280.63378805174267, Y: 69.22011810782746, Width: 10.5, Height: 8
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Text: 'U', X: 263.40288012352147, Y: 66.16344753623846, Width: 10.5, Height: 8
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Text: 'G', X: 244.62329490508637, Y: 73.04292273595641, Width: 10.5, Height: 8
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Text: 'G', X: 225.84370968665127, Y: 79.9223979356743, Width: 10.5, Height: 8
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Text: 'C', X: 212.01792798844065, Y: 89.24093294840358, Width: 10.5, Height: 8
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Text: 'G', X: 195.83047418190063, Y: 85.24672794475524, Width: 10.5, Height: 8
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Text: 'G', X: 175.83047418190063, Y: 85.24672794475524, Width: 10.5, Height: 8
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Text: 'G', X: 155.83047418190063, Y: 85.24672794475524, Width: 10.5, Height: 8
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Text: 'C', X: 135.83047418190063, Y: 85.24672794475524, Width: 10.5, Height: 8
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Text: 'G', X: 115.83047418190063, Y: 85.24672794475524, Width: 10.5, Height: 8
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Text: 'C', X: 95.83047418190063, Y: 85.24672794475524, Width: 10.5, Height: 8
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Text: 'C', X: 79.70759144705772, Y: 91.92504463807822, Width: 10.5, Height: 8
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Text: 'U', X: 65.56545582332677, Y: 106.06718026180914, Width: 10.5, Height: 8
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Text: 'G', X: 64.5761808289979, Y: 123.53921059717169, Width: 10.5, Height: 8
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Text: 'C', X: 54.245381970719905, Y: 137.66454613315227, Width: 10.5, Height: 8
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Text: 'A', X: 37.89457622281179, Y: 143.9016656965731, Width: 10.5, Height: 8
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Text: 'G', X: 20.780809006494792, Y: 140.2452356452872, Width: 10.5, Height: 8
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Text: 'A', X: 8.406430051285952, Y: 127.87085669007831, Width: 10.5, Height: 8
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Text: 'U', X: 4.75, Y: 110.75708947376131, Width: 10.5, Height: 8
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Text: 'U', X: 10.987119563420833, Y: 94.40628372585323, Width: 10.5, Height: 8
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Text: 'G', X: 25.112455099401416, Y: 84.07548486757523, Width: 10.5, Height: 8
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Text: 'A', X: 42.58448543476396, Y: 83.08620987324636, Width: 10.5, Height: 8
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Text: 'G', X: 56.72662105849491, Y: 68.94407424951541, Width: 10.5, Height: 8
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Text: 'A', X: 63.45454214112351, Y: 52.771511124696104, Width: 10.5, Height: 8
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Text: 'A', X: 79.63738650635878, Y: 46.068357510842674, Width: 10.5, Height: 8
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Text: 'G', X: 95.83047418190063, Y: 52.746727944755236, Width: 10.5, Height: 8
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Text: 'C', X: 115.83047418190063, Y: 52.746727944755236, Width: 10.5, Height: 8
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Text: 'G', X: 135.83047418190063, Y: 52.746727944755236, Width: 10.5, Height: 8
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Text: 'C', X: 155.83047418190063, Y: 52.746727944755236, Width: 10.5, Height: 8
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Text: 'C', X: 175.83047418190063, Y: 52.746727944755236, Width: 10.5, Height: 8
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Text: 'U', X: 195.83047418190063, Y: 52.746727944755236, Width: 10.5, Height: 8
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Text: 'C', X: 214.66456248710966, Y: 49.40557195571725, Width: 10.5, Height: 8
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Text: 'C', X: 233.44414770554476, Y: 42.52609675599936, Width: 10.5, Height: 8
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Text: 'G', X: 252.22373292397987, Y: 35.64662155628142, Width: 10.5, Height: 8
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Text: 'G', X: 263.40274455294536, Y: 22.18260659047516, Width: 10.5, Height: 8
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Text: 'G', X: 280.6337108441504, Y: 19.125843486903676, Width: 10.5, Height: 8
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Text: 'A', X: 295.7618387736469, Y: 27.92298764559453, Width: 10.5, Height: 8
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Text: 'G', X: 315.7618387736469, Y: 27.92298764559453, Width: 10.5, Height: 8
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Text: 'C', X: 335.7618387736469, Y: 27.92298764559453, Width: 10.5, Height: 8
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Text: 'U', X: 351.2790347149901, Y: 19.059932792428327, Width: 10.5, Height: 8
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Text: 'G', X: 368.7969301034447, Y: 22.58986938837907, Width: 10.5, Height: 8
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Text: 'A', X: 379.6706536151115, Y: 36.770816049448484, Width: 10.5, Height: 8
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Text: 'G', X: 378.5341530795929, Y: 54.60464563664138, Width: 10.5, Height: 8
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Text: 'C', X: 387.3290537313295, Y: 72.56709876883028, Width: 10.5, Height: 8
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Text: 'G', X: 396.1239543830661, Y: 90.52955190101918, Width: 10.5, Height: 8
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Text: 'A', X: 413.25805050232503, Y: 94.08943254171467, Width: 10.5, Height: 8
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Text: 'C', X: 427.08112823702265, Y: 104.82127869885397, Width: 10.5, Height: 8
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Text: 'U', X: 434.77666803704165, Y: 120.53842434258723, Width: 10.5, Height: 8
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Text: 'U', X: 434.7766661110804, Y: 138.03842434258712, Width: 10.5, Height: 8
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Text: 'U', X: 427.0811228515629, Y: 153.7555682924559, Width: 10.5, Height: 8
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Text: 'C', X: 413.25804275468045, Y: 164.48741140699929, Width: 10.5, Height: 8
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Text: 'C', X: 413.25804275468045, Y: 184.48741140699929, Width: 10.5, Height: 8
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Text: 'C', X: 413.25804275468045, Y: 204.48741140699929, Width: 10.5, Height: 8
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Text: 'C', X: 413.25804275468045, Y: 224.48741140699929, Width: 10.5, Height: 8
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Text: 'G', X: 465.75804275468045, Y: 224.48741140699929, Width: 10.5, Height: 8
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Text: 'A', X: 483.25804275468045, Y: 224.48741140699929, Width: 10.5, Height: 8
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Text: 'G', X: 500.75804275468045, Y: 224.48741140699929, Width: 10.5, Height: 8
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Text: 'U', X: 518.2580427546804, Y: 224.48741140699929, Width: 10.5, Height: 8
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Text: 'U', X: 535.7580427546804, Y: 224.48741140699929, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_5.svg


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Text: '1', X: 176.50804275468045, Y: 244.48741140699926, Width: 9.0, Height: 8
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Text: '10', X: 224.50804275468045, Y: 204.48741140699926, Width: 18.0, Height: 8
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Text: '30', X: 317.5565077874323, Y: 84.91317531621485, Width: 18.0, Height: 8
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Text: '40', X: 359.50804275468045, Y: 244.48741140699929, Width: 18.0, Height: 8
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Text: '50', X: 327.6327136075971, Y: 77.69125984745006, Width: 18.0, Height: 8
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Text: '60', X: 172.08047418190063, Y: 105.24672794475524, Width: 18.0, Height: 8
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Text: '70', X: 7.478407039283642, Y: 157.81656503884253, Width: 18.0, Height: 8
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Text: '80', X: 112.08047418190063, Y: 32.746727944755236, Width: 18.0, Height: 8
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Text: '90', X: 293.76528203577044, Y: 7.999999999999972, Width: 18.0, Height: 8
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Text: '100', X: 434.3451339006203, Y: 92.19924921584845, Width: 27.0, Height: 8
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Text: '115', X: 545.0080427546804, Y: 244.48741140699929, Width: 27.0, Height: 8
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Text: 'POLRMT, -33.8 ± 1.7
 kcal/mol, AUC: 0.607', X: 213.00402137734022, Y: 257.2874114069993, Width: 142.5, Height: 23
Calculated bounding box: (4.75, -2.842170943040401e-14, 572.0080427546804, 257.2874114069993)
Updated viewBox: -0.25 -5.000000000000028 577.2580427546804 267.28741140699935
Updated SVG: /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_final_6.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_final_6.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CCGCAAGGUGGUGAAGCAGACGGUGAUGACGGUGGUGUACGGGGUCACGCGCUAUGGCGGGCGCCUGCAGAUUGAGAAGCGCCUCCGGGAGCUGAGCGACUUUCCCCAGGAGUUC', '-structureDBN', '((((...((.((.............)).)).)))).(((.((.(((.(((......)))))).)))))..........((.((....)).)).((((..((......))..))))', '-o', '/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_5.svg', '-title', 'POLRMT, -33.6 ± 1.4\n kcal/mol, AUC: 0.627', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,7,8,9,10,11,12,13,16,19,22,23,24,25,27,28,31,32,33,34,35,36,37,38,41,42,43,44,45,49,51,53,55,56,57,59,60,61,63,66,67,70,72,73,74,76,79,81,84,87,88,89,91,93,94,96,98,101,102,103,109,110,112,113,114', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '64,1,97,105,15,82,83,115,29,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,2,75,77,14,78,17,21,85,86,90,95,99,100,39,106,108,50,52,58,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '4,5,6,68,69,71,80,18,20,26,92,40,104,107,46,47,48,111,54']
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Text: 'G', X: 340.1296838963398, Y: 177.51992144213028, Width: 10.5, Height: 8
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Text: 'G', X: 340.1296838963398, Y: 197.51992144213028, Width: 10.5, Height: 8
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Text: 'G', X: 340.1296838963398, Y: 229.87099430229586, Width: 10.5, Height: 8
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Text: 'C', X: 340.1296838963398, Y: 249.87099430229586, Width: 10.5, Height: 8
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Text: 'G', X: 375.1296838963398, Y: 249.87099430229586, Width: 10.5, Height: 8
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Text: 'A', X: 375.1296838963398, Y: 229.87099430229586, Width: 10.5, Height: 8
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Text: 'G', X: 375.1296838963398, Y: 209.87099430229586, Width: 10.5, Height: 8
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Text: 'C', X: 375.1296838963398, Y: 189.87099430229586, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_2.svg


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Text: 'C', X: 375.1296838963398, Y: 144.19211233616272, Width: 10.5, Height: 8
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Text: 'U', X: 375.1296838963398, Y: 124.19211233616272, Width: 10.5, Height: 8
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Text: 'C', X: 413.5113788729467, Y: 91.8461223600589, Width: 10.5, Height: 8
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Text: 'G', X: 407.6296838963398, Y: 144.19211233616272, Width: 10.5, Height: 8
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Text: 'POLRMT, -33.6 ± 1.4
 kcal/mol, AUC: 0.627', X: 145.3796836068708, Y: 282.67099430229587, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 455.7599495759521, 282.67099430229587)
Updated viewBox: -0.25 0.0 461.0099495759521 287.67099430229587
Updated SVG: /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_final_5.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_final_5.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CCGCAAGGUGGUGAAGCAGACGGUGAUGACGGUGGUGUACGGGGUCACGCGCUAUGGCGGGCGCCUGCAGAUUGAGAAGCGCCUCCGGGAGCUGAGCGACUUUCCCCAGGAGUUC', '-structureDBN', '((....)).((.((((....((((.....(((.(((((.(((((((.(((......)))))).))))...........))))).)))...)))).....)))).)).........', '-o', '/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_2.svg', '-title', 'POLRMT, -33.6 ± 1.5\n kcal/mol, AUC: 0.686', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,7,8,9,10,11,12,13,16,19,22,23,24,25,27,28,31,32,33,34,35,36,37,38,41,42,43,44,45,49,51,53,55,56,57,59,60,61,63,66,67,70,72,73,74,76,79,81,84,87,88,89,91,93,94,96,98,101,102,103,109,110,112,113,114', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '64,1,97,105,15,82,83,115,29,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,2,75,77,14,78,17,21,85,86,90,95,99,100,39,106,108,50,52,58,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '4,5,6,68,69,71,80,18,20,26,92,40,104,107,46,47,48,111,54']
Warning: Font Verdana not found. Using default font.
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Text: 'C', X: 167.5329103671902, Y: 565.3749681436188, Width: 10.5, Height: 8
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Text: 'G', X: 200.0329103671902, Y: 585.3749681436188, Width: 10.5, Height: 8
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Text: 'G', X: 235.0329103671902, Y: 585.3749681436188, Width: 10.5, Height: 8
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Text: 'G', X: 235.0329103671902, Y: 565.3749681436188, Width: 10.5, Height: 8
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Text: 'G', X: 225.46977172920623, Y: 227.55445419149208, Width: 10.5, Height: 8
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Text: 'G', X: 233.24970596564455, Y: 196.15284828351076, Width: 10.5, Height: 8
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Text: 'G', X: 238.05937205571252, Y: 176.7397827836457, Width: 10.5, Height: 8
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Text: 'U', X: 242.86903814578045, Y: 157.32671728378062, Width: 10.5, Height: 8
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Text: 'G', X: 247.6787042358484, Y: 137.91365178391555, Width: 10.5, Height: 8
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Text: 'U', X: 252.48837032591632, Y: 118.50058628405048, Width: 10.5, Height: 8
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Text: 'A', X: 240.39620697272574, Y: 107.43123783874171, Width: 10.5, Height: 8
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Text: 'C', X: 232.55967105401538, Y: 93.03194638538662, Width: 10.5, Height: 8
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Text: 'G', X: 212.55967105401538, Y: 93.03194638538662, Width: 10.5, Height: 8
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Text: 'G', X: 192.55967105401538, Y: 93.03194638538662, Width: 10.5, Height: 8
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Text: 'G', X: 172.55967105401538, Y: 93.03194638538662, Width: 10.5, Height: 8
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Text: 'G', X: 155.48056945085955, Y: 96.84754962606439, Width: 10.5, Height: 8
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Text: 'U', X: 137.3821024836601, Y: 105.35904147163365, Width: 10.5, Height: 8
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Text: 'C', X: 119.28363551646066, Y: 113.87053331720284, Width: 10.5, Height: 8
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Text: 'A', X: 105.45232138391458, Y: 124.59176222842524, Width: 10.5, Height: 8
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Text: 'C', X: 88.3733596642549, Y: 120.77612773618165, Width: 10.5, Height: 8
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Text: 'G', X: 68.3733596642549, Y: 120.77612773618165, Width: 10.5, Height: 8
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Text: 'C', X: 48.373359664254906, Y: 120.77612773618165, Width: 10.5, Height: 8
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Text: 'G', X: 33.27430305167013, Y: 129.62302782768455, Width: 10.5, Height: 8
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Text: 'C', X: 16.027369688151055, Y: 126.65782271278857, Width: 10.5, Height: 8
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Text: 'U', X: 4.75, Y: 113.27611561930297, Width: 10.5, Height: 8
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Text: 'A', X: 4.75, Y: 95.77613985306061, Width: 10.5, Height: 8
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Text: 'U', X: 16.027369688151055, Y: 82.39443275957478, Width: 10.5, Height: 8
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Text: 'G', X: 33.27430305167013, Y: 79.4292276446788, Width: 10.5, Height: 8
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Text: 'G', X: 48.373359664254906, Y: 88.2761277361817, Width: 10.5, Height: 8
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Text: 'C', X: 68.3733596642549, Y: 88.2761277361817, Width: 10.5, Height: 8
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Text: 'G', X: 88.3733596642549, Y: 88.2761277361817, Width: 10.5, Height: 8
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Text: 'G', X: 105.45246126741074, Y: 84.4605244955037, Width: 10.5, Height: 8
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Text: 'G', X: 123.55092823461018, Y: 75.94903264993468, Width: 10.5, Height: 8
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Text: 'C', X: 141.64939520180963, Y: 67.43754080436543, Width: 10.5, Height: 8
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Text: 'G', X: 155.48070933435568, Y: 56.71631189314303, Width: 10.5, Height: 8
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Text: 'C', X: 172.55967105401538, Y: 60.53194638538662, Width: 10.5, Height: 8
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Text: 'C', X: 192.55967105401538, Y: 60.53194638538662, Width: 10.5, Height: 8
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Text: 'U', X: 212.55967105401538, Y: 60.53194638538662, Width: 10.5, Height: 8
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Text: 'G', X: 232.55967105401538, Y: 60.53194638538662, Width: 10.5, Height: 8
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Text: 'C', X: 241.2169343526988, Y: 45.11176611267706, Width: 10.5, Height: 8
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Text: 'A', X: 254.72246869146113, Y: 33.69551849403729, Width: 10.5, Height: 8
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Text: 'G', X: 271.36882404999983, Y: 27.726513489613126, Width: 10.5, Height: 8
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Text: 'A', X: 289.05146912418644, Y: 27.95938823262304, Width: 10.5, Height: 8
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Text: 'U', X: 305.53485869725233, Y: 34.36470131225724, Width: 10.5, Height: 8
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Text: 'U', X: 318.73506456945114, Y: 46.1326549320313, Width: 10.5, Height: 8
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Text: 'G', X: 326.98323816218215, Y: 61.775474366192384, Width: 10.5, Height: 8
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Text: 'A', X: 329.23659628633834, Y: 79.31550129404764, Width: 10.5, Height: 8
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Text: 'G', X: 325.21025599850316, Y: 96.53522113358463, Width: 10.5, Height: 8
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Text: 'A', X: 315.41325119794845, Y: 111.25761443099026, Width: 10.5, Height: 8
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Text: 'A', X: 301.08417753191213, Y: 121.62138861508419, Width: 10.5, Height: 8
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Text: 'G', X: 284.034601763197, Y: 126.31629368041098, Width: 10.5, Height: 8
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Text: 'C', X: 279.22493567312904, Y: 145.72935918027605, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_1.svg


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Text: 'C', X: 264.79593740292523, Y: 203.96855567987126, Width: 10.5, Height: 8
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Text: 'U', X: 267.3883699415236, Y: 221.27547029608212, Width: 10.5, Height: 8
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Text: 'C', X: 257.01597577455277, Y: 235.37027214800577, Width: 10.5, Height: 8
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Text: 'C', X: 252.20624164746744, Y: 254.78332079129603, Width: 10.5, Height: 8
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Text: 'G', X: 247.3965075203821, Y: 274.1963694345861, Width: 10.5, Height: 8
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Text: 'G', X: 258.2330482326986, Y: 287.93752605949607, Width: 10.5, Height: 8
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Text: 'G', X: 261.9229818325766, Y: 305.044085913204, Width: 10.5, Height: 8
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Text: 'A', X: 257.71446634081593, Y: 322.0305039392509, Width: 10.5, Height: 8
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Text: 'G', X: 246.46500732795704, Y: 335.4357145648998, Width: 10.5, Height: 8
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Text: 'C', X: 250.68207645085897, Y: 354.98606821931395, Width: 10.5, Height: 8
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Text: 'U', X: 254.8991455737609, Y: 374.53642187372816, Width: 10.5, Height: 8
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Text: 'G', X: 259.11621469666284, Y: 394.08677552814237, Width: 10.5, Height: 8
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Text: 'G', X: 287.0647221680649, Y: 413.82049700911716, Width: 10.5, Height: 8
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Text: 'C', X: 292.54752724015503, Y: 430.4394274362374, Width: 10.5, Height: 8
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Text: 'G', X: 290.6921472492694, Y: 447.8407941954727, Width: 10.5, Height: 8
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Text: 'A', X: 281.82852883655033, Y: 462.9300708061558, Width: 10.5, Height: 8
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Text: 'C', X: 267.5329103671902, Y: 473.0238952834533, Width: 10.5, Height: 8
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Text: 'U', X: 267.5329103671902, Y: 493.0238952834533, Width: 10.5, Height: 8
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Text: 'U', X: 267.5329103671902, Y: 513.0238952834534, Width: 10.5, Height: 8
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Text: 'U', X: 267.5329103671902, Y: 533.0238952834534, Width: 10.5, Height: 8
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Text: 'C', X: 274.21128751867946, Y: 549.1994317135361, Width: 10.5, Height: 8
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Text: 'C', X: 267.5329103671902, Y: 585.3749681436188, Width: 10.5, Height: 8
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Text: 'U', X: 407.5329103671902, Y: 585.3749681436188, Width: 10.5, Height: 8
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Text: 'C', X: 425.0329103671902, Y: 585.3749681436188, Width: 10.5, Height: 8
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Text: '1', X: 168.2829103671902, Y: 605.3749681436188, Width: 9.0, Height: 8
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Text: '10', X: 217.14077474345925, Y: 599.5171037673498, Width: 18.0, Height: 8
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Text: '20', X: 194.50610652085493, Y: 403.6908252771584, Width: 18.0, Height: 8
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Text: '30', X: 195.41892528758348, Y: 255.34734606136783, Width: 18.0, Height: 8
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Text: '115', X: 416.7829103671902, Y: 605.3749681436188, Width: 27.0, Height: 8
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Text: 'POLRMT, -33.6 ± 1.5
 kcal/mol, AUC: 0.686', X: 148.8914551835951, Y: 618.1749681436188, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 443.7829103671902, 618.1749681436188)
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Updated SVG: /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_final_2.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_final_2.svg
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Warning: Font Verdana not found. Using default font.
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Text: 'C', X: 24.28121618000452, Y: 324.0118387736469, Width: 10.5, Height: 8
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Text: 'G', X: 32.51454019106666, Y: 200.46981784091562, Width: 10.5, Height: 8
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Text: 'G', X: 39.57710343337499, Y: 184.4582797427981, Width: 10.5, Height: 8
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Text: 'U', X: 55.295821603076675, Y: 176.7660075868898, Width: 10.5, Height: 8
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Text: 'A', X: 82.51695690306826, Y: 195.20149500414036, Width: 10.5, Height: 8
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Text: 'A', X: 81.2074764352966, Y: 212.65240938487116, Width: 10.5, Height: 8
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Text: 'G', X: 68.96040250816779, Y: 225.15274266212882, Width: 10.5, Height: 8
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Text: 'C', X: 64.10618087141661, Y: 244.5547150438558, Width: 10.5, Height: 8
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Text: 'A', X: 74.1727142341448, Y: 258.8695641893089, Width: 10.5, Height: 8
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Text: 'G', X: 76.31241716212608, Y: 276.23826222284004, Width: 10.5, Height: 8
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Text: 'A', X: 70.0211188166082, Y: 292.5682825880351, Width: 10.5, Height: 8
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Text: 'C', X: 56.78121618000452, Y: 304.0118387736469, Width: 10.5, Height: 8
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Text: 'G', X: 56.78121618000452, Y: 324.0118387736469, Width: 10.5, Height: 8
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Text: 'G', X: 56.78121618000452, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'U', X: 74.28121618000452, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'G', X: 91.78121618000452, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'A', X: 91.78121618000452, Y: 324.0118387736469, Width: 10.5, Height: 8
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Text: 'U', X: 91.78121618000452, Y: 304.0118387736469, Width: 10.5, Height: 8
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Text: 'G', X: 131.46797078670915, Y: 192.01366898696793, Width: 10.5, Height: 8
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Text: 'U', X: 138.61942687055281, Y: 207.98574414754395, Width: 10.5, Height: 8
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Text: 'A', X: 135.93628425428824, Y: 225.2788426193337, Width: 10.5, Height: 8
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Text: 'C', X: 124.28121618000452, Y: 238.3329568075138, Width: 10.5, Height: 8
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Text: 'G', X: 124.28121618000452, Y: 258.3329568075138, Width: 10.5, Height: 8
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Text: 'G', X: 134.6608994974063, Y: 272.4223960286449, Width: 10.5, Height: 8
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Text: 'G', X: 134.6608994974063, Y: 289.9223995525158, Width: 10.5, Height: 8
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Text: 'G', X: 124.28121618000452, Y: 304.0118387736469, Width: 10.5, Height: 8
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Text: 'U', X: 124.28121618000452, Y: 324.0118387736469, Width: 10.5, Height: 8
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Text: 'C', X: 124.28121618000452, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'A', X: 141.78121618000452, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'C', X: 159.28121618000452, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'G', X: 176.78121618000452, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'C', X: 194.28121618000452, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'G', X: 211.78121618000452, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'C', X: 211.78121618000452, Y: 324.0118387736469, Width: 10.5, Height: 8
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Text: 'U', X: 211.78121618000452, Y: 304.0118387736469, Width: 10.5, Height: 8
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Text: 'A', X: 202.98408571777156, Y: 288.8837880517427, Width: 10.5, Height: 8
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Text: 'U', X: 206.0407562893606, Y: 271.6528801235215, Width: 10.5, Height: 8
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Text: 'G', X: 199.1612810896427, Y: 252.8732949050864, Width: 10.5, Height: 8
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Text: 'G', X: 192.2818058899248, Y: 234.0937096866513, Width: 10.5, Height: 8
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Text: 'C', X: 182.96327087719555, Y: 220.26792798844073, Width: 10.5, Height: 8
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Text: 'G', X: 186.9574758808439, Y: 204.0804741819007, Width: 10.5, Height: 8
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Text: 'G', X: 186.9574758808439, Y: 184.0804741819007, Width: 10.5, Height: 8
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Text: 'G', X: 186.9574758808439, Y: 164.0804741819007, Width: 10.5, Height: 8
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Text: 'C', X: 186.9574758808439, Y: 144.0804741819007, Width: 10.5, Height: 8
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Text: 'G', X: 186.9574758808439, Y: 124.08047418190071, Width: 10.5, Height: 8
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Text: 'C', X: 186.9574758808439, Y: 104.08047418190074, Width: 10.5, Height: 8
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Text: 'C', X: 180.27915918752095, Y: 87.95759144705778, Width: 10.5, Height: 8
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Text: 'U', X: 166.13702356379, Y: 73.81545582332683, Width: 10.5, Height: 8
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Text: 'G', X: 148.66499322842748, Y: 72.82618082899796, Width: 10.5, Height: 8
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Text: 'C', X: 134.5396576924469, Y: 62.49538197072002, Width: 10.5, Height: 8
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Text: 'A', X: 128.30253812902603, Y: 46.14457622281191, Width: 10.5, Height: 8
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Text: 'G', X: 131.95896818031193, Y: 29.030809006494906, Width: 10.5, Height: 8
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Text: 'A', X: 144.33334713552082, Y: 16.656430051285952, Width: 10.5, Height: 8
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Text: 'U', X: 161.44711435183783, Y: 13.0, Width: 10.5, Height: 8
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Text: 'U', X: 177.79792009974597, Y: 19.237119563420947, Width: 10.5, Height: 8
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Text: 'G', X: 188.12871895802394, Y: 33.36245509940147, Width: 10.5, Height: 8
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Text: 'A', X: 189.11799395235278, Y: 50.83448543476402, Width: 10.5, Height: 8
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Text: 'G', X: 203.26012957608373, Y: 64.97662105849497, Width: 10.5, Height: 8
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Text: 'A', X: 219.43269270090303, Y: 71.70454214112351, Width: 10.5, Height: 8
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Text: 'A', X: 226.1358463147565, Y: 87.88738650635878, Width: 10.5, Height: 8
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Text: 'G', X: 219.4574758808439, Y: 104.08047418190074, Width: 10.5, Height: 8
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Text: 'C', X: 219.4574758808439, Y: 124.08047418190071, Width: 10.5, Height: 8
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Text: 'G', X: 219.4574758808439, Y: 144.0804741819007, Width: 10.5, Height: 8
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Text: 'C', X: 219.4574758808439, Y: 164.0804741819007, Width: 10.5, Height: 8
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Text: 'C', X: 219.4574758808439, Y: 184.0804741819007, Width: 10.5, Height: 8
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Text: 'U', X: 219.4574758808439, Y: 204.0804741819007, Width: 10.5, Height: 8
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Text: 'C', X: 222.79863186988186, Y: 222.91456248710975, Width: 10.5, Height: 8
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Text: 'C', X: 229.67810706959975, Y: 241.69414770554485, Width: 10.5, Height: 8
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Text: 'G', X: 236.55758226931766, Y: 260.4737329239799, Width: 10.5, Height: 8
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Text: 'G', X: 250.02159723512386, Y: 271.6527445529455, Width: 10.5, Height: 8
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Text: 'G', X: 253.07836033869535, Y: 288.8837108441504, Width: 10.5, Height: 8
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Text: 'A', X: 244.28121618000455, Y: 304.0118387736469, Width: 10.5, Height: 8
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Text: 'G', X: 244.28121618000455, Y: 324.0118387736469, Width: 10.5, Height: 8
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Text: 'C', X: 244.28121618000455, Y: 344.0118387736469, Width: 10.5, Height: 8
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Text: 'U', X: 261.78121618000455, Y: 344.01183877364696, Width: 10.5, Height: 8
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Text: 'G', X: 279.28121618000455, Y: 344.01183877364696, Width: 10.5, Height: 8
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Text: 'A', X: 279.28121618000455, Y: 324.0118387736469, Width: 10.5, Height: 8
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Text: 'G', X: 279.28121618000455, Y: 304.0118387736469, Width: 10.5, Height: 8
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Text: 'C', X: 279.28121618000455, Y: 284.0118387736469, Width: 10.5, Height: 8
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Text: 'G', X: 268.9015328626027, Y: 269.92239955251586, Width: 10.5, Height: 8
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Text: 'A', X: 268.9015328626027, Y: 252.4223960286449, Width: 10.5, Height: 8
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Text: 'C', X: 279.28121618000455, Y: 238.33295680751385, Width: 10.5, Height: 8
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Text: 'U', X: 279.28121618000455, Y: 218.33295680751385, Width: 10.5, Height: 8
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Text: 'U', X: 270.43431608850165, Y: 203.23390019492908, Width: 10.5, Height: 8
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Text: 'U', X: 273.3995212033976, Y: 185.98696683141006, Width: 10.5, Height: 8
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Text: 'C', X: 286.78122829688334, Y: 174.70959714325895, Width: 10.5, Height: 8
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Text: 'C', X: 304.28120406312576, Y: 174.70959714325895, Width: 10.5, Height: 8
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Text: 'C', X: 317.66291115661136, Y: 185.98696683140994, Width: 10.5, Height: 8
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Text: 'C', X: 320.62811627150734, Y: 203.23390019492908, Width: 10.5, Height: 8
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Text: 'A', X: 311.78121618000455, Y: 218.33295680751385, Width: 10.5, Height: 8
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Text: 'G', X: 311.78121618000455, Y: 238.33295680751385, Width: 10.5, Height: 8
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Text: 'G', X: 322.16089949740626, Y: 252.4223960286449, Width: 10.5, Height: 8
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Text: 'A', X: 322.16089949740626, Y: 269.92239955251586, Width: 10.5, Height: 8
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Text: 'G', X: 311.78121618000455, Y: 284.0118387736469, Width: 10.5, Height: 8
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Text: 'U', X: 311.78121618000455, Y: 304.0118387736469, Width: 10.5, Height: 8
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Text: 'U', X: 311.78121618000455, Y: 324.01183877364696, Width: 10.5, Height: 8
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Text: 'C', X: 311.78121618000455, Y: 344.01183877364696, Width: 10.5, Height: 8
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Text: '1', X: 25.03121618000452, Y: 364.0118387736469, Width: 9.0, Height: 8
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Text: '10', X: 8.807150140934127, Y: 199.16498743551003, Width: 18.0, Height: 8
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Text: '20', X: 82.63089683034713, Y: 304.0729626505655, Width: 18.0, Height: 8
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Text: '30', X: 68.28265107713932, Y: 255.17160007694787, Width: 18.0, Height: 8
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Text: '40', X: 139.88191241218868, Y: 233.27820109336366, Width: 18.0, Height: 8
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Text: '50', X: 190.53121618000452, Y: 364.0118387736469, Width: 18.0, Height: 8
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Text: '60', X: 163.2074758808439, Y: 184.0804741819007, Width: 18.0, Height: 8
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Text: '70', X: 110.63763878675658, Y: 19.47840703928381, Width: 18.0, Height: 8
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Text: '80', X: 235.7074758808439, Y: 124.08047418190071, Width: 18.0, Height: 8
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Text: '90', X: 260.4542038255991, Y: 305.7652820357704, Width: 18.0, Height: 8
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Text: '100', X: 251.2826510771394, Y: 235.17160007694753, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_9.svg


Text: '110', X: 332.91148185961674, Y: 246.17917010794838, Width: 27.0, Height: 8
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Text: '115', X: 303.53121618000455, Y: 364.01183877364696, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'POLRMT, -33.3 ± 1.5
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Updated SVG: /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_final_1.svg
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Warning: Font Verdana not found. Using default font.
Text: 'G', X: 62.286302712151624, Y: 172.56649804418976, Width: 10.5, Height: 8
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
Text: 'C', X: 331.1225276077528, Y: 675.4602534110525, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Text: 'G', X: 363.6225276077528, Y: 695.4602534110525, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_8.svg


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Text: '115', X: 425.3725276077528, Y: 735.4602534110525, Width: 27.0, Height: 8
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Text: 'POLRMT, -32.6 ± 1.5
 kcal/mol, AUC: 0.561', X: 159.02603800846296, Y: 748.2602534110524, Width: 142.5, Height: 23
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Updated SVG: /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_final_9.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_final_9.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CCGCAAGGUGGUGAAGCAGACGGUGAUGACGGUGGUGUACGGGGUCACGCGCUAUGGCGGGCGCCUGCAGAUUGAGAAGCGCCUCCGGGAGCUGAGCGACUUUCCCCAGGAGUUC', '-structureDBN', '..((..((.((((..(((.((.((....)).))..))).(((((((.(((......)))))).))))............)))).))....)).((((..((......))..))))', '-o', '/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_8.svg', '-title', 'POLRMT, -29.9 ± 1.4\n kcal/mol, AUC: 0.587', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,7,8,9,10,11,12,13,16,19,22,23,24,25,27,28,31,32,33,34,35,36,37,38,41,42,43,44,45,49,51,53,55,56,57,59,60,61,63,66,67,70,72,73,74,76,79,81,84,87,88,89,91,93,94,96,98,101,102,103,109,110,112,113,114', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '64,1,97,105,15,82,83,115,29,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,2,75,77,14,78,17,21,85,86,90,95,99,100,39,106,108,50,52,58,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '4,5,6,68,69,71,80,18,20,26,92,40,104,107,46,47,48,111,54']
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Text: 'G', X: 109.33971083642572, Y: 55.1162580290823, Width: 10.5, Height: 8
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Text: 'G', X: 128.8784627425343, Y: 50.845757595697876, Width: 10.5, Height: 8
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Text: 'C', X: 148.4172146486429, Y: 46.57525716231339, Width: 10.5, Height: 8
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Text: 'G', X: 164.28756100372263, Y: 39.20083470561832, Width: 10.5, Height: 8
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Text: 'G', X: 417.5478427611439, Y: 296.39333390530936, Width: 10.5, Height: 8
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Text: 'C', X: 417.5478427611439, Y: 316.39333390530936, Width: 10.5, Height: 8
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Text: 'U', X: 435.0478427611439, Y: 316.39333390530936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_11.svg


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Text: 'G', X: 452.5478427611439, Y: 276.39333390530936, Width: 10.5, Height: 8
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Text: 'U', X: 443.70094266964105, Y: 175.61539532659145, Width: 10.5, Height: 8
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Text: '115', X: 476.7978427611439, Y: 336.39333390530936, Width: 27.0, Height: 8
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Text: 'POLRMT, -29.9 ± 1.4
 kcal/mol, AUC: 0.587', X: 184.08876303927286, Y: 349.1933339053094, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 533.1781084407562, 349.1933339053094)
Updated viewBox: -0.25 -5.0 538.4281084407562 359.1933339053094
Updated SVG: /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_final_8.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_final_8.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CCGCAAGGUGGUGAAGCAGACGGUGAUGACGGUGGUGUACGGGGUCACGCGCUAUGGCGGGCGCCUGCAGAUUGAGAAGCGCCUCCGGGAGCUGAGCGACUUUCCCCAGGAGUUC', '-structureDBN', '..((.(((((.....((((.(((((((..((........))..))))).))))...))...)))))))..........((.((....)).)).((((..((......))..))))', '-o', '/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_11.svg', '-title', 'POLRMT, -32.1 ± 1.4\n kcal/mol, AUC: 0.472', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,7,8,9,10,11,12,13,16,19,22,23,24,25,27,28,31,32,33,34,35,36,37,38,41,42,43,44,45,49,51,53,55,56,57,59,60,61,63,66,67,70,72,73,74,76,79,81,84,87,88,89,91,93,94,96,98,101,102,103,109,110,112,113,114', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '64,1,97,105,15,82,83,115,29,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,2,75,77,14,78,17,21,85,86,90,95,99,100,39,106,108,50,52,58,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '4,5,6,68,69,71,80,18,20,26,92,40,104,107,46,47,48,111,54']
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Text: 'C', X: 110.11210655323472, Y: 408.25490296443127, Width: 10.5, Height: 8
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Text: 'G', X: 101.60048853798693, Y: 426.35331059500777, Width: 10.5, Height: 8
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Text: 'G', X: 212.25, Y: 517.727495206397, Width: 10.5, Height: 8
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Text: 'A', X: 229.75, Y: 517.727495206397, Width: 10.5, Height: 8
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Text: 'A', X: 247.25, Y: 517.727495206397, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_3.svg


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Text: 'C', X: 264.75, Y: 465.3764223462314, Width: 10.5, Height: 8
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Text: 'U', X: 261.2012656127609, Y: 428.23997767864023, Width: 10.5, Height: 8
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Warning: Font Verdana not found. Using default font.
Text: 'POLRMT, -32.1 ± 1.4
 kcal/mol, AUC: 0.472', X: 123.93984165870089, Y: 550.5274952063969, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 412.88026567961225, 550.5274952063969)
Updated viewBox: -0.25 0.0 418.13026567961225 555.5274952063969
Updated SVG: /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_final_11.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_final_11.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CCGCAAGGUGGUGAAGCAGACGGUGAUGACGGUGGUGUACGGGGUCACGCGCUAUGGCGGGCGCCUGCAGAUUGAGAAGCGCCUCCGGGAGCUGAGCGACUUUCCCCAGGAGUUC', '-structureDBN', '((((..((((((((.(((.((.((....)).))..)))......)))).))))...))))((((((........))..))))(((((((((..........)))))..))))...', '-o', '/disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_3.svg', '-title', 'POLRMT, -31.8 ± 1.7\n kcal/mol, AUC: 0.648', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,7,8,9,10,11,12,13,16,19,22,23,24,25,27,28,31,32,33,34,35,36,37,38,41,42,43,44,45,49,51,53,55,56,57,59,60,61,63,66,67,70,72,73,74,76,79,81,84,87,88,89,91,93,94,96,98,101,102,103,109,110,112,113,114', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '64,1,97,105,15,82,83,115,29,30', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,2,75,77,14,78,17,21,85,86,90,95,99,100,39,106,108,50,52,58,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '4,5,6,68,69,71,80,18,20,26,92,40,104,107,46,47,48,111,54']
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Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_10.svg


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Text: 'POLRMT, -31.8 ± 1.7
 kcal/mol, AUC: 0.648', X: 162.18415229635764, Y: 342.8214291100225, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 470.3683045927153, 342.8214291100225)
Updated viewBox: -0.25 -5.0 475.6183045927153 352.8214291100225
Updated SVG: /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_final_3.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_final_3.svg
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Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/9e5e6e6d-77ab-445b-94e1-5cb1204271ce/final_image/POLRMT_fold_final_10.svg
