Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/9ff53bd6-2124-4b78-97c6-5619f43d26e1/final_image/KPNB1_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 158.90 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 158.90 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 158.90 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.52 MB
Based on canonical annotations, the following gene is in your area of interest: KPNB1(+)
write fasta - Elapsed time since the previous call: 0.61 seconds
write fasta - Current memory usage: 172.52 MB
Length of region: 103 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.19 seconds
write dat - Current memory usage: 175.85 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/9ff53bd6-2124-4b78-97c6-5619f43d26e1/fasta/KPNB1.fasta" "/disk1/www/rails/humanrnamap/public/result/9ff53bd6-2124-4b78-97c6-5619f43d26e1/ct/KPNB1.ct" --SHAPE "KPNB1.dat"

fold - Elapsed time since the previous call: 0.13 seconds
fold - Current memory usage: 175.85 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/9ff53bd6-2124-4b78-97c6-5619f43d26e1/ct/KPNB1.ct" "/disk1/www/rails/humanrnamap/public/result/9ff53bd6-2124-4b78-97c6-5619f43d26e1/fold_FE/KPNB1.txt" -sh "KPNB1.dat"

efn2 - Elapsed time since the previous call: 0.44 seconds
efn2 - Current memory usage: 175.85 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/9ff53bd6-2124-4b78-97c6-5619f43d26e1/ct/KPNB1.ct" 1 "/disk1/www/rails/humanrnamap/public/result/9ff53bd6-2124-4b78-97c6-5619f43d26e1/fold_dbn/KPNB1_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 175.85 MB
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Text: 'KPNB1, -14.4 ± 0.9
 kcal/mol, AUC: 0.624', X: 172.5, Y: 520.7409908254813, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 491.0, 520.7409908254813)
Updated viewBox: -0.25 -5.0 496.25 530.7409908254813
Updated SVG: /disk1/www/rails/humanrnamap/public/result/9ff53bd6-2124-4b78-97c6-5619f43d26e1/final_image/KPNB1_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/9ff53bd6-2124-4b78-97c6-5619f43d26e1/final_image/KPNB1_fold_final_1.svg
