Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/a52b3908-2320-4867-8aa3-7b11dcb2fab3/final_image/ZBTB20_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 159.04 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 159.04 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 159.04 MB
read annotations - Elapsed time since the previous call: 0.10 seconds
read annotations - Current memory usage: 172.59 MB
Based on canonical annotations, the following gene is in your area of interest: ZBTB20(-)
write fasta - Elapsed time since the previous call: 0.56 seconds
write fasta - Current memory usage: 172.59 MB
Length of region: 102 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.19 seconds
write dat - Current memory usage: 176.19 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/a52b3908-2320-4867-8aa3-7b11dcb2fab3/fasta/ZBTB20.fasta" "/disk1/www/rails/humanrnamap/public/result/a52b3908-2320-4867-8aa3-7b11dcb2fab3/ct/ZBTB20.ct" --SHAPE "ZBTB20.dat"

fold - Elapsed time since the previous call: 0.13 seconds
fold - Current memory usage: 176.19 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/a52b3908-2320-4867-8aa3-7b11dcb2fab3/ct/ZBTB20.ct" "/disk1/www/rails/humanrnamap/public/result/a52b3908-2320-4867-8aa3-7b11dcb2fab3/fold_FE/ZBTB20.txt" -sh "ZBTB20.dat"

efn2 - Elapsed time since the previous call: 0.41 seconds
efn2 - Current memory usage: 176.19 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/a52b3908-2320-4867-8aa3-7b11dcb2fab3/ct/ZBTB20.ct" 1 "/disk1/www/rails/humanrnamap/public/result/a52b3908-2320-4867-8aa3-7b11dcb2fab3/fold_dbn/ZBTB20_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.19 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AAUCUUCAUCAUGGCAAACAAAGGUGAGAAGCUGAUAUGAUAGAGAAAAUCUAUGGUAACUUGAUAUUUUAAGGUAAUUUGAGUGUGCUGACCCCACUAUGC', '-structureDBN', '......(((..(((........(((.((..(((..(((.(((((.....))))).))).(((((....)))))........)))...)).))))))..))).', '-o', '/disk1/www/rails/humanrnamap/public/result/a52b3908-2320-4867-8aa3-7b11dcb2fab3/final_image/ZBTB20_fold_1.svg', '-title', 'ZBTB20, -12.6 ± 1.4\n kcal/mol, AUC: 0.627', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,5,6,9,12,13,14,23,24,25,26,28,31,33,34,36,38,39,41,43,45,50,52,54,55,56,57,61,62,63,65,67,68,69,70,73,74,75,78,79,80,81,83,84,85,86,87,89,90,98,100,101', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '32,96,99,10,76,47,15,27,93,94,95', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '97,66,102,71,8,42,91,48,18,51,88,58,59,92', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,2,4,7,72,11,77,16,17,82,19,20,21,22,29,30,35,37,40,44,46,49,53,60']
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Text: 'ZBTB20, -12.6 ± 1.4
 kcal/mol, AUC: 0.627', X: 211.37396004424136, Y: 412.4522535724822, Width: 142.5, Height: 23
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Updated SVG: /disk1/www/rails/humanrnamap/public/result/a52b3908-2320-4867-8aa3-7b11dcb2fab3/final_image/ZBTB20_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/a52b3908-2320-4867-8aa3-7b11dcb2fab3/final_image/ZBTB20_fold_final_1.svg
