Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/a87d70f9-cb18-4d62-871f-ac92456e0dc2/final_image/SLC11A2_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 158.77 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 158.77 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 158.77 MB
read annotations - Elapsed time since the previous call: 0.10 seconds
read annotations - Current memory usage: 172.41 MB
Based on canonical annotations, the following gene is in your area of interest: SLC11A2(-)
write fasta - Elapsed time since the previous call: 0.57 seconds
write fasta - Current memory usage: 172.41 MB
Length of region: 92 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.21 seconds
write dat - Current memory usage: 176.01 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/a87d70f9-cb18-4d62-871f-ac92456e0dc2/fasta/SLC11A2.fasta" "/disk1/www/rails/humanrnamap/public/result/a87d70f9-cb18-4d62-871f-ac92456e0dc2/ct/SLC11A2.ct" --SHAPE "SLC11A2.dat"

fold - Elapsed time since the previous call: 0.10 seconds
fold - Current memory usage: 176.01 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/a87d70f9-cb18-4d62-871f-ac92456e0dc2/ct/SLC11A2.ct" "/disk1/www/rails/humanrnamap/public/result/a87d70f9-cb18-4d62-871f-ac92456e0dc2/fold_FE/SLC11A2.txt" -sh "SLC11A2.dat"

efn2 - Elapsed time since the previous call: 0.41 seconds
efn2 - Current memory usage: 176.01 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/a87d70f9-cb18-4d62-871f-ac92456e0dc2/ct/SLC11A2.ct" 1 "/disk1/www/rails/humanrnamap/public/result/a87d70f9-cb18-4d62-871f-ac92456e0dc2/fold_dbn/SLC11A2_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 176.01 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGUCUGCCAGUCUUGGUAACAUCAACCCUGCCUAUAGUAAUCCCUCUCUUUCACAGUCCCCUGGGGACUCAGAGGAGUACUUCGCCACUUAC', '-structureDBN', '.((.(((((....))))))).........((....((((.(.(((((.......((((((...)))))).)))))).))))..)).......', '-o', '/disk1/www/rails/humanrnamap/public/result/a87d70f9-cb18-4d62-871f-ac92456e0dc2/final_image/SLC11A2_fold_1.svg', '-title', 'SLC11A2, -23.0 ± 0.9\n kcal/mol, AUC: 0.774', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,5,6,10,11,13,14,15,16,17,22,29,30,33,35,37,38,41,45,47,49,50,51,56,57,62,63,64,65,66,69,72,74,75,77,78,81,82,84,89,90', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '67,68,55,8,9,58,59', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '4,7,79,18,19,20,86,23,87,91,27,28,40,42,43,44,60', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '1,70,71,73,12,76,80,83,21,85,24,25,26,88,92,31,32,34,36,39,46,48,52,53,54,61']
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Text: 'SLC11A2, -23.0 ± 0.9
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Updated SVG: /disk1/www/rails/humanrnamap/public/result/a87d70f9-cb18-4d62-871f-ac92456e0dc2/final_image/SLC11A2_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/a87d70f9-cb18-4d62-871f-ac92456e0dc2/final_image/SLC11A2_fold_final_1.svg
