Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
  0% [=                                                 ] /                     
  6% [====                                              ] -                     
 12% [=======                                           ] \                     
 18% [==========                                        ] |                     
 25% [=============                                     ] /                     
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 37% [===================                               ] \                     
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 50% [==========================                        ] /                     
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 69% [===================================               ] |                     
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 82% [==========================================        ] -                     
 88% [=============================================     ] \                     
 94% [================================================  ] |                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/aa5adcec-db99-407c-92f9-e29e192d383b/final_image/MAVS_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 157.29 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 157.29 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 157.29 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 170.88 MB
Based on canonical annotations, the following gene is in your area of interest: MAVS(+)
write fasta - Elapsed time since the previous call: 0.31 seconds
write fasta - Current memory usage: 170.88 MB
Length of region: 79 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.19 seconds
write dat - Current memory usage: 174.46 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/aa5adcec-db99-407c-92f9-e29e192d383b/fasta/MAVS.fasta" "/disk1/www/rails/humanrnamap/public/result/aa5adcec-db99-407c-92f9-e29e192d383b/ct/MAVS.ct" --SHAPE "MAVS.dat"

fold - Elapsed time since the previous call: 0.08 seconds
fold - Current memory usage: 174.46 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/aa5adcec-db99-407c-92f9-e29e192d383b/ct/MAVS.ct" "/disk1/www/rails/humanrnamap/public/result/aa5adcec-db99-407c-92f9-e29e192d383b/fold_FE/MAVS.txt" -sh "MAVS.dat"

efn2 - Elapsed time since the previous call: 0.42 seconds
efn2 - Current memory usage: 174.46 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/aa5adcec-db99-407c-92f9-e29e192d383b/ct/MAVS.ct" 1 "/disk1/www/rails/humanrnamap/public/result/aa5adcec-db99-407c-92f9-e29e192d383b/fold_dbn/MAVS_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 174.46 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AAUGUCCAUCCACCAACCCAAAUGUCCAUCCACAGUUGAAGCUACAGUGAAGUCACAGGGUCGAAUACUACUGCACAGC', '-structureDBN', '..(((..........((((...(((.....((((((....)))...))).....)))))))...........)))....', '-o', '/disk1/www/rails/humanrnamap/public/result/aa5adcec-db99-407c-92f9-e29e192d383b/final_image/MAVS_fold_1.svg', '-title', 'MAVS, -5.9 ± 1.1\n kcal/mol, AUC: 0.583', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '66,3,4,5,69,72,9,73,78,23,24,25,29,35,36,37,38,41,43,47,48,49,52,53,58,59,60,61,63', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '7,8,42,74,12,14,50,20,56,57,27', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '2,6,10,11,75,13,79,16,18,28,30,31,46,54,55,62', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,65,67,68,70,71,76,77,15,17,19,21,22,26,32,33,34,39,40,44,45,51']
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Text: 'MAVS, -5.9 ± 1.1
 kcal/mol, AUC: 0.583', X: 90.69448164798939, Y: 500.96935155322853, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 322.2201829381161, 500.96935155322853)
Updated viewBox: -9.0 0.0 336.2201829381161 505.96935155322853
Updated SVG: /disk1/www/rails/humanrnamap/public/result/aa5adcec-db99-407c-92f9-e29e192d383b/final_image/MAVS_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/aa5adcec-db99-407c-92f9-e29e192d383b/final_image/MAVS_fold_final_1.svg
