Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 94% [================================================  ] -                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/b1b274ca-0966-44aa-b7c7-e304d659ff40/final_image/IQGAP1_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 159.26 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 159.26 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 159.26 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.93 MB
Based on canonical annotations, the following gene is in your area of interest: IQGAP1(+)
write fasta - Elapsed time since the previous call: 0.66 seconds
write fasta - Current memory usage: 172.93 MB
Length of region: 90 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.18 seconds
write dat - Current memory usage: 176.14 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/b1b274ca-0966-44aa-b7c7-e304d659ff40/fasta/IQGAP1.fasta" "/disk1/www/rails/humanrnamap/public/result/b1b274ca-0966-44aa-b7c7-e304d659ff40/ct/IQGAP1.ct" --SHAPE "IQGAP1.dat"

fold - Elapsed time since the previous call: 0.11 seconds
fold - Current memory usage: 176.14 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/b1b274ca-0966-44aa-b7c7-e304d659ff40/ct/IQGAP1.ct" "/disk1/www/rails/humanrnamap/public/result/b1b274ca-0966-44aa-b7c7-e304d659ff40/fold_FE/IQGAP1.txt" -sh "IQGAP1.dat"

efn2 - Elapsed time since the previous call: 0.43 seconds
efn2 - Current memory usage: 176.14 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/b1b274ca-0966-44aa-b7c7-e304d659ff40/ct/IQGAP1.ct" 1 "/disk1/www/rails/humanrnamap/public/result/b1b274ca-0966-44aa-b7c7-e304d659ff40/fold_dbn/IQGAP1_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.14 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AAGCAGAAGAAGGCAUAUCAAGAUCGGUUAGCUUACCUGCGCUCCCACAAAGAUGAAGUUGUAAAGAUUCAGUCCCUGGCAAGGAUGCAC', '-structureDBN', '..((((....((((..(((......)))..))))..))))(((((..((..(((..((((.....))))..)))..))....))).))..', '-o', '/disk1/www/rails/humanrnamap/public/result/b1b274ca-0966-44aa-b7c7-e304d659ff40/final_image/IQGAP1_fold_1.svg', '-title', 'IQGAP1, -18.6 ± 1.4\n kcal/mol, AUC: 0.665', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,6,9,12,13,16,18,22,24,26,27,28,29,31,33,34,38,39,41,43,52,54,55,58,59,60,61,62,66,68,69,72,73,77,78,79,83,84,86,87', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '32,5,37,42,74,75,45,14,47,17,81,20,21,85,89', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,65,35,4,36,8,11,44,76,48,49,82,23,57,63', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,2,67,70,7,71,10,15,80,19,88,25,90,30,40,46,50,51,53,56']
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Text: 'G', X: 257.5451688290393, Y: 294.91163155819925, Width: 10.5, Height: 8
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Text: 'C', X: 257.5451688290393, Y: 274.91163155819925, Width: 10.5, Height: 8
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Text: 'C', X: 169.9656360546779, Y: 121.4046012646445, Width: 10.5, Height: 8
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Text: 'C', X: 325.0451688290393, Y: 294.91163155819925, Width: 10.5, Height: 8
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Text: '30', X: 308.49380539468683, Y: 145.27053847622398, Width: 18.0, Height: 8
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Text: '40', X: 236.2951688290393, Y: 314.91163155819925, Width: 18.0, Height: 8
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Text: '50', X: 162.48081075150057, Y: 193.83753301240813, Width: 18.0, Height: 8
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Text: '60', X: 16.3283946369771, Y: 82.42470752054959, Width: 18.0, Height: 8
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Text: '70', X: 118.58505579556572, Y: 53.19572720488327, Width: 18.0, Height: 8
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Text: '90', X: 321.2951688290393, Y: 314.91163155819925, Width: 18.0, Height: 8
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Text: 'IQGAP1, -18.6 ± 1.4
 kcal/mol, AUC: 0.665', X: 110.25903899751319, Y: 327.71163155819926, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 358.2680779950264, 327.71163155819926)
Updated viewBox: -0.25 0.0 363.5180779950264 332.71163155819926
Updated SVG: /disk1/www/rails/humanrnamap/public/result/b1b274ca-0966-44aa-b7c7-e304d659ff40/final_image/IQGAP1_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/b1b274ca-0966-44aa-b7c7-e304d659ff40/final_image/IQGAP1_fold_final_1.svg
