Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 94% [================================================  ] -                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/b274183e-a52c-4d7a-9cd6-d9bab012f022/final_image/MYH10_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 157.82 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 157.82 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 157.82 MB
read annotations - Elapsed time since the previous call: 0.10 seconds
read annotations - Current memory usage: 171.40 MB
Based on canonical annotations, the following gene is in your area of interest: MYH10(-)
write fasta - Elapsed time since the previous call: 1.35 seconds
write fasta - Current memory usage: 171.40 MB
Length of region: 90 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.23 seconds
write dat - Current memory usage: 174.86 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/b274183e-a52c-4d7a-9cd6-d9bab012f022/fasta/MYH10.fasta" "/disk1/www/rails/humanrnamap/public/result/b274183e-a52c-4d7a-9cd6-d9bab012f022/ct/MYH10.ct" --SHAPE "MYH10.dat"

fold - Elapsed time since the previous call: 0.10 seconds
fold - Current memory usage: 174.86 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/b274183e-a52c-4d7a-9cd6-d9bab012f022/ct/MYH10.ct" "/disk1/www/rails/humanrnamap/public/result/b274183e-a52c-4d7a-9cd6-d9bab012f022/fold_FE/MYH10.txt" -sh "MYH10.dat"

efn2 - Elapsed time since the previous call: 0.52 seconds
efn2 - Current memory usage: 174.86 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/b274183e-a52c-4d7a-9cd6-d9bab012f022/ct/MYH10.ct" 1 "/disk1/www/rails/humanrnamap/public/result/b274183e-a52c-4d7a-9cd6-d9bab012f022/fold_dbn/MYH10_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 174.86 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AUUCCAAGUUCAUCAAAGAAAAGAAACUCAUGGAAGAUCGCAUUGCUGAGUGUUCCUCUCAGCUGGCUGAAGAGGAAGAAAAGGCGAAAA', '-structureDBN', '.((((((((((...........))).))..))))).......(((((.....((((((((((....))).))))))).....)))))...', '-o', '/disk1/www/rails/humanrnamap/public/result/b274183e-a52c-4d7a-9cd6-d9bab012f022/final_image/MYH10_fold_1.svg', '-title', 'MYH10, -22.2 ± 1.0\n kcal/mol, AUC: 0.692', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,8,9,10,13,18,23,28,31,32,33,36,38,40,43,44,45,47,48,50,51,52,53,54,57,59,62,64,65,66,68,69,72,74,75,78,83,84,86', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '67,55,56,58,61', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '1,4,5,6,73,15,20,21,87,24,89,88,29,49,60,63', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '70,7,71,11,12,76,14,77,16,17,79,19,80,81,22,82,85,25,26,27,90,30,34,35,37,39,41,42,46']
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Text: 'A', X: 183.87108285645508, Y: 290.8000784410166, Width: 10.5, Height: 8
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Text: 'A', X: 177.19271242254248, Y: 386.9931661165584, Width: 10.5, Height: 8
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Text: 'C', X: 247.1927124225425, Y: 386.9931661165584, Width: 10.5, Height: 8
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Text: 'G', X: 264.6927124225425, Y: 386.9931661165584, Width: 10.5, Height: 8
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Text: 'C', X: 282.1927124225425, Y: 386.9931661165584, Width: 10.5, Height: 8
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Text: 'U', X: 317.1927124225425, Y: 386.9931661165584, Width: 10.5, Height: 8
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Text: 'U', X: 317.1927124225425, Y: 366.9931661165584, Width: 10.5, Height: 8
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Text: 'G', X: 317.1927124225425, Y: 346.9931661165585, Width: 10.5, Height: 8
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Text: 'C', X: 317.1927124225425, Y: 326.9931661165585, Width: 10.5, Height: 8
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Text: 'U', X: 317.1927124225425, Y: 306.9931661165585, Width: 10.5, Height: 8
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Text: 'G', X: 289.205155965023, Y: 265.8483134453892, Width: 10.5, Height: 8
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Text: 'U', X: 317.1927124225425, Y: 224.70346077421982, Width: 10.5, Height: 8
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Text: 'U', X: 317.1927124225425, Y: 204.70346077421982, Width: 10.5, Height: 8
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Text: 'C', X: 317.1927124225425, Y: 184.70346077421982, Width: 10.5, Height: 8
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Text: 'C', X: 317.1927124225425, Y: 164.70346077421982, Width: 10.5, Height: 8
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Text: 'U', X: 317.1927124225425, Y: 144.70346077421982, Width: 10.5, Height: 8
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Text: 'C', X: 317.1927124225425, Y: 124.70346077421982, Width: 10.5, Height: 8
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Text: 'U', X: 317.1927124225425, Y: 104.70346077421982, Width: 10.5, Height: 8
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Text: 'C', X: 313.3771091818645, Y: 87.62435917106404, Width: 10.5, Height: 8
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Text: 'A', X: 304.8656173362954, Y: 69.5258922038646, Width: 10.5, Height: 8
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Text: 'G', X: 296.35412549072623, Y: 51.42742523666516, Width: 10.5, Height: 8
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Text: 'C', X: 285.8499574340732, Y: 37.43050753903697, Width: 10.5, Height: 8
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Text: 'U', X: 290.07264661943884, Y: 20.44757058336336, Width: 10.5, Height: 8
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Text: 'G', X: 305.908837575676, Y: 13.0, Width: 10.5, Height: 8
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Text: 'G', X: 321.68263146405343, Y: 20.57883091007932, Width: 10.5, Height: 8
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Text: 'C', X: 325.7641343124253, Y: 37.596250987615235, Width: 10.5, Height: 8
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Text: 'U', X: 334.27562615799445, Y: 55.69471795481468, Width: 10.5, Height: 8
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Text: 'G', X: 342.7871180035636, Y: 73.79318492201412, Width: 10.5, Height: 8
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Text: 'A', X: 353.50834691478605, Y: 87.62449905456015, Width: 10.5, Height: 8
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Text: 'A', X: 349.6927124225425, Y: 104.70346077421982, Width: 10.5, Height: 8
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Text: 'G', X: 349.6927124225425, Y: 124.70346077421982, Width: 10.5, Height: 8
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Text: 'A', X: 349.6927124225425, Y: 144.70346077421982, Width: 10.5, Height: 8
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Text: 'G', X: 349.6927124225425, Y: 164.70346077421982, Width: 10.5, Height: 8
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Text: 'G', X: 349.6927124225425, Y: 184.70346077421982, Width: 10.5, Height: 8
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Text: 'A', X: 349.6927124225425, Y: 204.70346077421982, Width: 10.5, Height: 8
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Text: 'A', X: 349.6927124225425, Y: 224.70346077421982, Width: 10.5, Height: 8
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Text: 'G', X: 364.37621236037876, Y: 234.22427222785802, Width: 10.5, Height: 8
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Text: 'C', X: 349.6927124225425, Y: 346.9931661165585, Width: 10.5, Height: 8
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Text: 'G', X: 349.6927124225425, Y: 366.9931661165585, Width: 10.5, Height: 8
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Text: 'A', X: 349.6927124225425, Y: 386.9931661165584, Width: 10.5, Height: 8
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Text: 'A', X: 384.6927124225425, Y: 386.9931661165585, Width: 10.5, Height: 8
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Text: 'A', X: 402.1927124225425, Y: 386.9931661165585, Width: 10.5, Height: 8
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Text: '1', X: 127.94271242254248, Y: 406.9931661165584, Width: 9.0, Height: 8
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Text: '10', X: 79.7523751763474, Y: 279.38650532765183, Width: 18.0, Height: 8
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Text: '20', X: 47.54602191222341, Y: 167.9336975490791, Width: 18.0, Height: 8
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Text: '30', X: 200.121076996837, Y: 290.7847688136992, Width: 18.0, Height: 8
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Text: '40', X: 260.9427124225425, Y: 406.9931661165584, Width: 18.0, Height: 8
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Text: '50', X: 265.455155965023, Y: 265.8483134453892, Width: 18.0, Height: 8
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Text: '60', X: 290.108310988053, Y: 83.26356600132306, Width: 18.0, Height: 8
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Text: '70', X: 369.27717550853095, Y: 83.26384195636894, Width: 18.0, Height: 8
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Text: '80', X: 393.93026888006204, Y: 265.8483134453892, Width: 18.0, Height: 8
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Text: '90', X: 398.4427124225425, Y: 406.9931661165585, Width: 18.0, Height: 8
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Text: 'MYH10, -22.2 ± 1.0
 kcal/mol, AUC: 0.692', X: 137.47135621127126, Y: 419.7931661165585, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 416.4427124225425, 419.7931661165585)
Updated viewBox: -0.25 0.0 421.6927124225425 424.7931661165585
Updated SVG: /disk1/www/rails/humanrnamap/public/result/b274183e-a52c-4d7a-9cd6-d9bab012f022/final_image/MYH10_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/b274183e-a52c-4d7a-9cd6-d9bab012f022/final_image/MYH10_fold_final_1.svg
