Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 93% [===============================================   ] \                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/bc296df5-bd9c-4c85-8a0a-869ce7378bf2/final_image/DVL1_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 156.18 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 156.18 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 156.18 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 169.72 MB
Based on canonical annotations, the following gene is in your area of interest: DVL1(-)
write fasta - Elapsed time since the previous call: 2.01 seconds
write fasta - Current memory usage: 169.72 MB
Length of region: 75 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.29 seconds
write dat - Current memory usage: 173.11 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/bc296df5-bd9c-4c85-8a0a-869ce7378bf2/fasta/DVL1.fasta" "/disk1/www/rails/humanrnamap/public/result/bc296df5-bd9c-4c85-8a0a-869ce7378bf2/ct/DVL1.ct" --SHAPE "DVL1.dat"

fold - Elapsed time since the previous call: 0.10 seconds
fold - Current memory usage: 173.11 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/bc296df5-bd9c-4c85-8a0a-869ce7378bf2/ct/DVL1.ct" "/disk1/www/rails/humanrnamap/public/result/bc296df5-bd9c-4c85-8a0a-869ce7378bf2/fold_FE/DVL1.txt" -sh "DVL1.dat"

efn2 - Elapsed time since the previous call: 0.40 seconds
efn2 - Current memory usage: 173.11 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/bc296df5-bd9c-4c85-8a0a-869ce7378bf2/ct/DVL1.ct" 1 "/disk1/www/rails/humanrnamap/public/result/bc296df5-bd9c-4c85-8a0a-869ce7378bf2/fold_dbn/DVL1_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 173.11 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CUCCUCCUUCAGCAGCAUAACCGACUCCACCAUGUCCCUCAACAUCGUCACUGUCACGCUCAACAUGGAAAGACA', '-structureDBN', '....(((......(((......(((...((.((((......)))).))....)))..)))......)))......', '-o', '/disk1/www/rails/humanrnamap/public/result/bc296df5-bd9c-4c85-8a0a-869ce7378bf2/final_image/DVL1_fold_1.svg', '-title', 'DVL1, -6.7 ± 1.1\n kcal/mol, AUC: 0.564', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,66,67,5,68,8,9,72,12,15,18,23,26,33,34,35,39,45,47,48,52,53,54,58,60', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,3,4,36,6,7,37,10,46,22,25,28', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,69,70,13,20,21,27,29,30,32,38,43,44,49,55,59,61', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,71,73,74,11,75,14,16,17,19,24,31,40,41,42,50,51,56,57,62,63']
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Text: 'DVL1, -6.7 ± 1.1
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Calculated bounding box: (4.75, 5.0, 311.1324039862147, 496.80053310886296)
Updated viewBox: -0.25 0.0 316.3824039862147 501.80053310886296
Updated SVG: /disk1/www/rails/humanrnamap/public/result/bc296df5-bd9c-4c85-8a0a-869ce7378bf2/final_image/DVL1_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/bc296df5-bd9c-4c85-8a0a-869ce7378bf2/final_image/DVL1_fold_final_1.svg
