Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
  0% [=                                                 ] /                     
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 12% [=======                                           ] \                     
 19% [==========                                        ] |                     
 25% [=============                                     ] /                     
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 38% [====================                              ] \                     
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 90% [==============================================    ] \                     
 97% [================================================= ] |                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/c9959ccc-18c0-424f-ac41-bf4f39a14fa6/final_image/MAVS_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 158.01 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 158.01 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 158.01 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 171.59 MB
Based on canonical annotations, the following gene is in your area of interest: MAVS(+)
write fasta - Elapsed time since the previous call: 0.35 seconds
write fasta - Current memory usage: 171.59 MB
Length of region: 77 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.18 seconds
write dat - Current memory usage: 174.73 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/c9959ccc-18c0-424f-ac41-bf4f39a14fa6/fasta/MAVS.fasta" "/disk1/www/rails/humanrnamap/public/result/c9959ccc-18c0-424f-ac41-bf4f39a14fa6/ct/MAVS.ct" --SHAPE "MAVS.dat"

fold - Elapsed time since the previous call: 0.08 seconds
fold - Current memory usage: 174.73 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/c9959ccc-18c0-424f-ac41-bf4f39a14fa6/ct/MAVS.ct" "/disk1/www/rails/humanrnamap/public/result/c9959ccc-18c0-424f-ac41-bf4f39a14fa6/fold_FE/MAVS.txt" -sh "MAVS.dat"

efn2 - Elapsed time since the previous call: 0.53 seconds
efn2 - Current memory usage: 174.73 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/c9959ccc-18c0-424f-ac41-bf4f39a14fa6/ct/MAVS.ct" 1 "/disk1/www/rails/humanrnamap/public/result/c9959ccc-18c0-424f-ac41-bf4f39a14fa6/fold_dbn/MAVS_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 174.73 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AAGCUAUGUCCACCGAGACAUUGGCAAGAAUGUUUCUAACCACACGCUGACUGUAGCCCCAAACCUGAAACAACCCA', '-structureDBN', '..((((((((......))))).))).....((((((.........((((....)))).........)))))).....', '-o', '/disk1/www/rails/humanrnamap/public/result/c9959ccc-18c0-424f-ac41-bf4f39a14fa6/final_image/MAVS_fold_1.svg', '-title', 'MAVS, -19.3 ± 0.9\n kcal/mol, AUC: 0.715', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '66,3,67,5,7,8,9,15,17,21,22,23,24,28,31,32,33,34,35,37,46,48,49,52,53,54,56', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '4,6,10,11,74,76,18,19,20,25,41,50,57,58,59,60,61', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '36,68,38,70,71,72,42,43,44,73,75,77,55', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,2,65,69,12,13,14,16,26,27,29,30,39,40,45,47,51,62,63']
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Text: 'G', X: 231.69968523114127, Y: 83.70763161412509, Width: 10.5, Height: 8
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Text: 'A', X: 279.45937809046063, Y: 150.6575623343017, Width: 10.5, Height: 8
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Text: 'A', X: 319.1996852311413, Y: 332.3015226372524, Width: 10.5, Height: 8
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Text: '40', X: 128.38630651094326, Y: 190.58300780424318, Width: 18.0, Height: 8
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Text: 'MAVS, -19.3 ± 0.9
 kcal/mol, AUC: 0.715', X: 95.97484261557065, Y: 365.1015226372524, Width: 142.5, Height: 23
Calculated bounding box: (2.8272490459425796, 5.0, 333.4496852311413, 365.1015226372524)
Updated viewBox: -2.1727509540574204 0.0 340.6224361851987 370.1015226372524
Updated SVG: /disk1/www/rails/humanrnamap/public/result/c9959ccc-18c0-424f-ac41-bf4f39a14fa6/final_image/MAVS_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/c9959ccc-18c0-424f-ac41-bf4f39a14fa6/final_image/MAVS_fold_final_1.svg
