Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 98% [==================================================] |                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/d4d0bd48-42dc-4ff8-83a2-dd547b66e358/final_image/MYH10_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 158.11 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 158.11 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 158.11 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 171.75 MB
Based on canonical annotations, the following gene is in your area of interest: MYH10(-)
write fasta - Elapsed time since the previous call: 0.62 seconds
write fasta - Current memory usage: 171.75 MB
Length of region: 96 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.20 seconds
write dat - Current memory usage: 175.17 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/d4d0bd48-42dc-4ff8-83a2-dd547b66e358/fasta/MYH10.fasta" "/disk1/www/rails/humanrnamap/public/result/d4d0bd48-42dc-4ff8-83a2-dd547b66e358/ct/MYH10.ct" --SHAPE "MYH10.dat"

fold - Elapsed time since the previous call: 0.11 seconds
fold - Current memory usage: 175.17 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/d4d0bd48-42dc-4ff8-83a2-dd547b66e358/ct/MYH10.ct" "/disk1/www/rails/humanrnamap/public/result/d4d0bd48-42dc-4ff8-83a2-dd547b66e358/fold_FE/MYH10.txt" -sh "MYH10.dat"

efn2 - Elapsed time since the previous call: 0.44 seconds
efn2 - Current memory usage: 175.17 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/d4d0bd48-42dc-4ff8-83a2-dd547b66e358/ct/MYH10.ct" 1 "/disk1/www/rails/humanrnamap/public/result/d4d0bd48-42dc-4ff8-83a2-dd547b66e358/fold_dbn/MYH10_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 175.17 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CAGAAGAGAUGAGGGCAAGACUUGCUGCUAAAAAGCAGGAAUUAGAAGAGAUUCUACAUGACUUGGAGUCUAGGGUUGAAGAAGAAGAAGAAAGAA', '-structureDBN', '......................(.(((((....))))).).((((...((((((((.......))))))))....)))).................', '-o', '/disk1/www/rails/humanrnamap/public/result/d4d0bd48-42dc-4ff8-83a2-dd547b66e358/final_image/MYH10_fold_1.svg', '-title', 'MYH10, -15.8 ± 1.0\n kcal/mol, AUC: 0.756', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,6,8,10,11,13,14,15,19,22,23,24,26,27,29,35,38,39,42,43,45,48,50,52,53,55,59,60,63,64,65,66,68,69,71,73,74,75,76,77,78,81,84,87,90,94', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '37,25,28,30,95', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '32,33,2,34,36,5,67,96,44,49,54,91,61', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '1,4,7,9,12,16,17,18,20,21,31,40,41,46,47,51,56,57,58,62,70,72,79,80,82,83,85,86,88,89,92,93']
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Text: 'A', X: 787.25, Y: 336.26755156182315, Width: 10.5, Height: 8
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Text: '10', X: 158.5, Y: 356.2675515618231, Width: 18.0, Height: 8
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Text: '20', X: 333.5, Y: 356.2675515618231, Width: 18.0, Height: 8
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Text: '30', X: 363.02236236003057, Y: 202.03475022842886, Width: 18.0, Height: 8
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Text: '40', X: 418.5, Y: 356.2675515618231, Width: 18.0, Height: 8
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Text: '50', X: 421.91920177865336, Y: 202.26226481690378, Width: 18.0, Height: 8
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Text: '60', X: 410.6853371005664, Y: 8.0, Width: 18.0, Height: 8
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Text: '70', X: 492.25150332999476, Y: 184.6663175991157, Width: 18.0, Height: 8
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Text: '80', X: 503.5, Y: 356.2675515618231, Width: 18.0, Height: 8
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Text: '90', X: 678.5, Y: 356.2675515618231, Width: 18.0, Height: 8
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Text: '96', X: 783.5, Y: 356.26755156182315, Width: 18.0, Height: 8
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Text: 'MYH10, -15.8 ± 1.0
 kcal/mol, AUC: 0.756', X: 330.0, Y: 369.06755156182317, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 801.5, 369.06755156182317)
Updated viewBox: -0.25 -5.0 806.75 379.06755156182317
Updated SVG: /disk1/www/rails/humanrnamap/public/result/d4d0bd48-42dc-4ff8-83a2-dd547b66e358/final_image/MYH10_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/d4d0bd48-42dc-4ff8-83a2-dd547b66e358/final_image/MYH10_fold_final_1.svg
