Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 98% [==================================================] -                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/d79481d4-8da4-4cf1-9824-38de4caf86cd/final_image/MYH10_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 158.09 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 158.09 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 158.09 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 171.64 MB
Based on canonical annotations, the following gene is in your area of interest: MYH10(-)
write fasta - Elapsed time since the previous call: 1.19 seconds
write fasta - Current memory usage: 171.64 MB
Length of region: 86 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.26 seconds
write dat - Current memory usage: 174.83 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/d79481d4-8da4-4cf1-9824-38de4caf86cd/fasta/MYH10.fasta" "/disk1/www/rails/humanrnamap/public/result/d79481d4-8da4-4cf1-9824-38de4caf86cd/ct/MYH10.ct" --SHAPE "MYH10.dat"

fold - Elapsed time since the previous call: 0.13 seconds
fold - Current memory usage: 174.83 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/d79481d4-8da4-4cf1-9824-38de4caf86cd/ct/MYH10.ct" "/disk1/www/rails/humanrnamap/public/result/d79481d4-8da4-4cf1-9824-38de4caf86cd/fold_FE/MYH10.txt" -sh "MYH10.dat"

efn2 - Elapsed time since the previous call: 0.43 seconds
efn2 - Current memory usage: 174.83 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/d79481d4-8da4-4cf1-9824-38de4caf86cd/ct/MYH10.ct" 1 "/disk1/www/rails/humanrnamap/public/result/d79481d4-8da4-4cf1-9824-38de4caf86cd/fold_dbn/MYH10_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 174.83 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CUCGGGCCAUCCUGACUCCCCGGAUCAAGGUCGGCCGAGACUAUGUGCAAAAAGCCCAGACCAAAGAACAGGCAGAUUUUGCAGUA', '-structureDBN', '(((.((((..(((((.((....)))).)))..)))))))......(((((((.(((..............)))...)))))))...', '-o', '/disk1/www/rails/humanrnamap/public/result/d79481d4-8da4-4cf1-9824-38de4caf86cd/final_image/MYH10_fold_1.svg', '-title', 'MYH10, -26.6 ± 1.0\n kcal/mol, AUC: 0.631', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,4,5,6,10,13,14,17,22,23,25,29,30,31,33,34,37,39,42,44,45,46,47,54,59,66,71,72,75,77,78,79,80,81,84,85', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '64,35,38,7,8,9,73,11,49,18,19,56,58,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '67,68,70,74,12,82,24,27,28,36,40,41,50,53,55,57', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '1,65,3,69,76,15,16,83,20,21,86,26,32,43,48,51,52,60,61,62']
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Text: 'U', X: 163.56561886658267, Y: 341.4217687620122, Width: 10.5, Height: 8
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Text: 'G', X: 163.56561886658267, Y: 321.4217687620122, Width: 10.5, Height: 8
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Text: 'C', X: 163.56561886658267, Y: 301.4217687620122, Width: 10.5, Height: 8
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Text: 'A', X: 163.56561886658267, Y: 281.4217687620122, Width: 10.5, Height: 8
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Text: 'C', X: 68.8970974500078, Y: 111.96237171838379, Width: 10.5, Height: 8
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Text: 'G', X: 206.4453044997359, Y: 189.83233306475225, Width: 10.5, Height: 8
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Text: 'A', X: 196.06561886658267, Y: 341.4217687620122, Width: 10.5, Height: 8
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Text: 'G', X: 213.56561886658267, Y: 341.4217687620122, Width: 10.5, Height: 8
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Text: 'A', X: 248.56561886658267, Y: 341.4217687620122, Width: 10.5, Height: 8
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Text: '1', X: 9.315618866582668, Y: 361.4217687620122, Width: 9.0, Height: 8
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Text: '20', X: 112.72505089859666, Y: 8.0, Width: 18.0, Height: 8
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Text: '30', X: 105.32246287549432, Y: 194.25568489403503, Width: 18.0, Height: 8
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Text: '40', X: 54.81561886658267, Y: 361.4217687620122, Width: 18.0, Height: 8
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Text: '50', X: 139.81561886658267, Y: 261.4217687620122, Width: 18.0, Height: 8
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Text: '60', X: 49.6173309280142, Y: 136.3461358761134, Width: 18.0, Height: 8
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Text: '70', X: 178.2253430704344, Y: 126.45551666707738, Width: 18.0, Height: 8
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Text: '80', X: 212.31561886658267, Y: 281.4217687620122, Width: 18.0, Height: 8
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Text: '86', X: 244.81561886658267, Y: 361.4217687620122, Width: 18.0, Height: 8
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Text: 'MYH10, -26.6 ± 1.0
 kcal/mol, AUC: 0.631', X: 60.657809433291334, Y: 374.22176876201223, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 262.81561886658267, 374.22176876201223)
Updated viewBox: -0.25 -5.0 268.06561886658267 384.22176876201223
Updated SVG: /disk1/www/rails/humanrnamap/public/result/d79481d4-8da4-4cf1-9824-38de4caf86cd/final_image/MYH10_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/d79481d4-8da4-4cf1-9824-38de4caf86cd/final_image/MYH10_fold_final_1.svg
