Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 94% [================================================  ] /                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/dc784704-b666-42c4-83ea-b68cd64bfe4a/final_image/ZMIZ1_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 158.60 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 158.60 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 158.60 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.12 MB
Based on canonical annotations, the following gene is in your area of interest: ZMIZ1(+)
write fasta - Elapsed time since the previous call: 0.43 seconds
write fasta - Current memory usage: 172.12 MB
Length of region: 85 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.17 seconds
write dat - Current memory usage: 175.79 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/dc784704-b666-42c4-83ea-b68cd64bfe4a/fasta/ZMIZ1.fasta" "/disk1/www/rails/humanrnamap/public/result/dc784704-b666-42c4-83ea-b68cd64bfe4a/ct/ZMIZ1.ct" --SHAPE "ZMIZ1.dat"

fold - Elapsed time since the previous call: 0.10 seconds
fold - Current memory usage: 175.79 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/dc784704-b666-42c4-83ea-b68cd64bfe4a/ct/ZMIZ1.ct" "/disk1/www/rails/humanrnamap/public/result/dc784704-b666-42c4-83ea-b68cd64bfe4a/fold_FE/ZMIZ1.txt" -sh "ZMIZ1.dat"

efn2 - Elapsed time since the previous call: 0.51 seconds
efn2 - Current memory usage: 175.79 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/dc784704-b666-42c4-83ea-b68cd64bfe4a/ct/ZMIZ1.ct" 1 "/disk1/www/rails/humanrnamap/public/result/dc784704-b666-42c4-83ea-b68cd64bfe4a/fold_dbn/ZMIZ1_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 175.79 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CUGGGGGUCCUAACGCCCCCGCAGGCAUGGGCAUCCCUCCGCACACCAGGCCGCCUGCUGACUUCACUCAGCCCGCGGCAGCCGC', '-structureDBN', '..((((((......))))))((.(((..(((......))).........(((((..(((((......)))))..))))).)))))', '-o', '/disk1/www/rails/humanrnamap/public/result/dc784704-b666-42c4-83ea-b68cd64bfe4a/final_image/ZMIZ1_fold_1.svg', '-title', 'ZMIZ1, -43.4 ± 1.4\n kcal/mol, AUC: 0.857', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,5,6,7,8,11,15,21,24,25,28,29,30,31,34,38,41,49,50,53,56,57,59,60,63,64,68,71,75,77,78,81,84', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '70,72,73,10,79,16,17,18,19,20,82,85,37,39,51,52,54,55', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '69,9,74,76,13,83,23,58,61', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '1,65,66,67,12,14,80,22,26,27,32,33,35,36,40,42,43,44,45,46,47,48,62']
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Text: 'C', X: 204.729283900741, Y: 49.76221336674638, Width: 10.5, Height: 8
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Text: 'G', X: 202.55067696816863, Y: 100.60416486476282, Width: 10.5, Height: 8
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Text: 'G', X: 291.41906665836507, Y: 189.47255455495923, Width: 10.5, Height: 8
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Text: 'U', X: 325.00663876472606, Y: 269.0220674384458, Width: 10.5, Height: 8
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Text: 'C', X: 310.8645031409951, Y: 254.87993181471487, Width: 10.5, Height: 8
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Text: 'G', X: 282.5802318935332, Y: 226.595660567253, Width: 10.5, Height: 8
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Text: 'C', X: 221.9961134507987, Y: 166.01154212451848, Width: 10.5, Height: 8
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Text: 'C', X: 122.25, Y: 203.23195840945152, Width: 10.5, Height: 8
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Text: '50', X: 217.93595652369027, Y: 94.78685652395473, Width: 18.0, Height: 8
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Text: '85', X: 118.5, Y: 223.23195840945152, Width: 18.0, Height: 8
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Text: 'ZMIZ1, -43.4 ± 1.4
 kcal/mol, AUC: 0.857', X: 123.88433220620678, Y: 313.85312269757054, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 385.51866441241356, 313.85312269757054)
Updated viewBox: -0.25 0.0 390.76866441241356 318.85312269757054
Updated SVG: /disk1/www/rails/humanrnamap/public/result/dc784704-b666-42c4-83ea-b68cd64bfe4a/final_image/ZMIZ1_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/dc784704-b666-42c4-83ea-b68cd64bfe4a/final_image/ZMIZ1_fold_final_1.svg
