Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_9.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 158.89 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 158.89 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 158.89 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.53 MB
Based on canonical annotations, the following gene is in your area of interest: CLOCK(-)
write fasta - Elapsed time since the previous call: 0.34 seconds
write fasta - Current memory usage: 172.53 MB
Length of region: 114 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.20 seconds
write dat - Current memory usage: 176.10 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/fasta/CLOCK.fasta" "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/ct/CLOCK.ct" --SHAPE "CLOCK.dat"

fold - Elapsed time since the previous call: 0.17 seconds
fold - Current memory usage: 176.10 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/ct/CLOCK.ct" "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/fold_FE/CLOCK.txt" -sh "CLOCK.dat"

efn2 - Elapsed time since the previous call: 0.61 seconds
efn2 - Current memory usage: 176.10 MB
This region has 13 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/ct/CLOCK.ct" 1 "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/fold_dbn/CLOCK_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.10 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/ct/CLOCK.ct" 2 "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/fold_dbn/CLOCK_temp2.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.10 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/ct/CLOCK.ct" 3 "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/fold_dbn/CLOCK_temp3.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.10 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/ct/CLOCK.ct" 4 "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/fold_dbn/CLOCK_temp4.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.10 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/ct/CLOCK.ct" 5 "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/fold_dbn/CLOCK_temp5.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.10 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/ct/CLOCK.ct" 6 "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/fold_dbn/CLOCK_temp6.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.10 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/ct/CLOCK.ct" 7 "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/fold_dbn/CLOCK_temp7.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.10 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/ct/CLOCK.ct" 8 "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/fold_dbn/CLOCK_temp8.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.10 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/ct/CLOCK.ct" 9 "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/fold_dbn/CLOCK_temp9.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.10 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/ct/CLOCK.ct" 10 "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/fold_dbn/CLOCK_temp10.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.10 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/ct/CLOCK.ct" 11 "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/fold_dbn/CLOCK_temp11.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 176.10 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/ct/CLOCK.ct" 12 "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/fold_dbn/CLOCK_temp12.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.10 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/ct/CLOCK.ct" 13 "/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/fold_dbn/CLOCK_temp13.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.10 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGUUACUCAGAUGACCUGAGGAAAGGAGGGAAAGUUCCAGCAGUUUCAUGAGAUGCAGUAUUGAGUGUUCUAGUUCCUGGAAUUAGUUGGCAGAGAAAAUGCUGCCUAGUGCUA', '-structureDBN', '...(((((((....(((......))).(((.....))).((.((.((....)).)).)).))))))).(((((...))))).......(((((........)))))........', '-o', '/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_9.svg', '-title', 'CLOCK, -23.6 ± 1.3\n kcal/mol, AUC: 0.697', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,7,10,12,13,17,18,20,21,25,26,28,29,30,34,35,36,40,43,44,45,46,49,50,52,54,55,58,59,61,62,63,65,66,67,68,69,71,73,74,75,78,79,80,83,84,86,87,88,89,90,93,95,100,101,103,104,107,109,110,111,113', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '97,5,6,102,105,106,16,91,92', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '32,38,39,41,76,77,112,85,22,23,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,70,8,9,72,11,14,15,81,82,19,24,27,94,96,33,98,99,37,42,108,47,48,114,51,53,56,57,60']
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Text: 'C', X: 374.2543491907849, Y: 296.25196560162095, Width: 10.5, Height: 8
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Warning: Font Verdana not found. Using default font.
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Warning: Font Verdana not found. Using default font.
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Text: 'CLOCK, -23.6 ± 1.3
 kcal/mol, AUC: 0.697', X: 199.32576414387154, Y: 329.05196560162096, Width: 142.5, Height: 23/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_4.svg


Calculated bounding box: (-4.0, 5.0, 533.0043491907849, 329.05196560162096)
Updated viewBox: -9.0 0.0 547.0043491907849 334.05196560162096
Updated SVG: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_9.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_9.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGUUACUCAGAUGACCUGAGGAAAGGAGGGAAAGUUCCAGCAGUUUCAUGAGAUGCAGUAUUGAGUGUUCUAGUUCCUGGAAUUAGUUGGCAGAGAAAAUGCUGCCUAGUGCUA', '-structureDBN', '((.((((.......(((......))).(((.....))).(((...........)))..........(((((((...))))))).....(((((........))))).)))))).', '-o', '/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_4.svg', '-title', 'CLOCK, -21.6 ± 0.9\n kcal/mol, AUC: 0.739', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,7,10,12,13,17,18,20,21,25,26,28,29,30,34,35,36,40,43,44,45,46,49,50,52,54,55,58,59,61,62,63,65,66,67,68,69,71,73,74,75,78,79,80,83,84,86,87,88,89,90,93,95,100,101,103,104,107,109,110,111,113', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '97,5,6,102,105,106,16,91,92', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '32,38,39,41,76,77,112,85,22,23,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,70,8,9,72,11,14,15,81,82,19,24,27,94,96,33,98,99,37,42,108,47,48,114,51,53,56,57,60']
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Text: 'U', X: 141.7323465980266, Y: 447.6207021673917, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_8.svg


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Text: '1', X: 109.98234659802658, Y: 467.6207021673917, Width: 9.0, Height: 8
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Text: '70', X: 378.8147054721507, Y: 279.1880500580539, Width: 18.0, Height: 8
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Text: '80', X: 350.61991613123115, Y: 345.9810426098266, Width: 18.0, Height: 8
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Text: 'CLOCK, -21.6 ± 0.9
 kcal/mol, AUC: 0.739', X: 167.67716307231592, Y: 514.0358087947964, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 4.999999999999943, 458.15323719486116, 514.0358087947964)
Updated viewBox: -9.0 -5.684341886080802e-14 472.15323719486116 519.0358087947964
Updated SVG: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_4.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_4.svg
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Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_6.svg


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Text: 'CLOCK, -23.2 ± 1.3
 kcal/mol, AUC: 0.702', X: 101.32089384968668, Y: 329.0519656016209, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 343.4097879519621, 329.0519656016209)
Updated viewBox: -9.0 0.0 357.4097879519621 334.0519656016209
Updated SVG: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_8.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_8.svg
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Text: 'C', X: 170.50683628594908, Y: 138.8878905765012, Width: 10.5, Height: 8
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Text: 'U', X: 275.6892609422098, Y: 104.33340458891394, Width: 10.5, Height: 8
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Text: 'U', X: 276.55031830337936, Y: 86.85459668612475, Width: 10.5, Height: 8
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Text: 'C', X: 285.00987743682555, Y: 71.53513178849994, Width: 10.5, Height: 8
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Text: 'A', X: 299.34426106454725, Y: 61.49642711632566, Width: 10.5, Height: 8
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Text: 'U', X: 316.63276717790626, Y: 58.7839187107752, Width: 10.5, Height: 8
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Text: 'A', X: 359.39377640340973, Y: 14.963604213635335, Width: 10.5, Height: 8
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Text: 'G', X: 368.39640709739245, Y: 46.02934986573882, Width: 10.5, Height: 8
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Text: 'U', X: 351.13501566335, Y: 108.05008799054298, Width: 10.5, Height: 8
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Text: 'A', X: 342.67545769623797, Y: 123.36954878396102, Width: 10.5, Height: 8
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Text: 'U', X: 328.3410780256416, Y: 133.40825186051399, Width: 10.5, Height: 8
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Text: 'U', X: 311.05257646645816, Y: 136.1207624758132, Width: 10.5, Height: 8
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Text: 'G', X: 294.3325695855793, Y: 130.95439335394792, Width: 10.5, Height: 8
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Text: 'U', X: 251.4513420333139, Y: 160.9850629461348, Width: 10.5, Height: 8
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Text: 'G', X: 235.0691548923, Y: 172.45781085048623, Width: 10.5, Height: 8
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Text: 'U', X: 218.6869677512861, Y: 183.93055875483765, Width: 10.5, Height: 8
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Text: 'U', X: 224.07186974761157, Y: 200.5814695554506, Width: 10.5, Height: 8
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Text: 'U', X: 245.52731868675647, Y: 221.83103826464202, Width: 10.5, Height: 8
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Text: 'C', X: 343.6615568824371, Y: 241.05787611576642, Width: 10.5, Height: 8
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Text: 'C', X: 360.6294966494983, Y: 245.34037678170773, Width: 10.5, Height: 8
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Text: 'G', X: 354.7423162446525, Y: 275.3886857456436, Width: 10.5, Height: 8
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Text: 'G', X: 337.41283458082165, Y: 272.9515035293626, Width: 10.5, Height: 8
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Text: 'A', X: 317.7859869416855, Y: 269.1061359591377, Width: 10.5, Height: 8
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Text: 'A', X: 298.1591393025494, Y: 265.2607683889128, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_5.svg


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Text: 'C', X: 200.59830258577762, Y: 326.8326283982131, Width: 10.5, Height: 8
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  v = VARNA(structure=fold_dbn, sequence=seq)

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Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_5.svg
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Updated SVG: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_2.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_2.svg/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_12.svg


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Text: 'A', X: 392.5632453932954, Y: 201.60789734342117, Width: 10.5, Height: 8
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Text: 'G', X: 519.75, Y: 327.92718516396707, Width: 10.5, Height: 8
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Text: 'C', X: 537.25, Y: 327.92718516396707, Width: 10.5, Height: 8
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Text: 'U', X: 554.75, Y: 327.92718516396707, Width: 10.5, Height: 8
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Text: 'A', X: 572.25, Y: 327.92718516396707, Width: 10.5, Height: 8
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Text: '1', X: 5.5, Y: 347.927185163967, Width: 9.0, Height: 8
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Text: '10', X: 68.50001455787354, Y: 247.90305396570386, Width: 18.0, Height: 8
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Text: '20', X: 135.14213562373095, Y: 342.06932078769796, Width: 18.0, Height: 8
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Text: '30', X: 241.00001455787356, Y: 287.90305396570415, Width: 18.0, Height: 8
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Text: '40', X: 314.35786437626905, Y: 342.069320787698, Width: 18.0, Height: 8
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Text: '50', X: 241.7491793859199, Y: 161.49365566257802, Width: 18.0, Height: 8
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Text: '60', X: 107.59481620582369, Y: 65.69010385056771, Width: 18.0, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_10.svg


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Text: '70', X: 258.954780188667, Y: 26.774080337827684, Width: 18.0, Height: 8
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Text: '80', X: 338.1469051659438, Y: 196.11154959739443, Width: 18.0, Height: 8
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Text: '90', X: 376.0, Y: 307.92718516396707, Width: 18.0, Height: 8
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Text: '100', X: 458.1601866068412, Y: 214.91740404968368, Width: 27.0, Height: 8
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Text: '110', X: 494.0, Y: 347.92718516396707, Width: 27.0, Height: 8
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Text: '114', X: 564.0, Y: 347.92718516396707, Width: 27.0, Height: 8
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Text: 'CLOCK, -23.9 ± 1.1
 kcal/mol, AUC: 0.682', X: 222.5, Y: 360.7271851639671, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 591.0, 360.7271851639671)
Updated viewBox: -0.25 0.0 596.25 365.7271851639671
Updated SVG: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_12.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_12.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGUUACUCAGAUGACCUGAGGAAAGGAGGGAAAGUUCCAGCAGUUUCAUGAGAUGCAGUAUUGAGUGUUCUAGUUCCUGGAAUUAGUUGGCAGAGAAAAUGCUGCCUAGUGCUA', '-structureDBN', '.....(((((.....))))).......(((.....))).(((...........)))((((((....(((((((...))))))).....(((((........))))).)))))).', '-o', '/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_10.svg', '-title', 'CLOCK, -21.9 ± 1.0\n kcal/mol, AUC: 0.691', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,7,10,12,13,17,18,20,21,25,26,28,29,30,34,35,36,40,43,44,45,46,49,50,52,54,55,58,59,61,62,63,65,66,67,68,69,71,73,74,75,78,79,80,83,84,86,87,88,89,90,93,95,100,101,103,104,107,109,110,111,113', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '97,5,6,102,105,106,16,91,92', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '32,38,39,41,76,77,112,85,22,23,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,70,8,9,72,11,14,15,81,82,19,24,27,94,96,33,98,99,37,42,108,47,48,114,51,53,56,57,60']
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Text: 'A', X: 177.25, Y: 305.6462189737557, Width: 10.5, Height: 8
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Text: 'G', X: 212.25, Y: 305.6462189737557, Width: 10.5, Height: 8
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Text: 'G', X: 229.75, Y: 305.6462189737557, Width: 10.5, Height: 8
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Text: 'A', X: 247.25, Y: 305.64621897375577, Width: 10.5, Height: 8
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Text: 'G', X: 264.75, Y: 305.64621897375577, Width: 10.5, Height: 8
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Text: 'G', X: 264.75, Y: 285.64621897375577, Width: 10.5, Height: 8
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Text: 'G', X: 264.75, Y: 265.64621897375577, Width: 10.5, Height: 8
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Text: 'A', X: 258.1018303951821, Y: 249.45817867410113, Width: 10.5, Height: 8
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Text: 'A', X: 281.0, Y: 226.6151985471033, Width: 10.5, Height: 8
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Text: 'G', X: 297.17195034877847, Y: 233.30241244784773, Width: 10.5, Height: 8
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Text: 'U', X: 297.25, Y: 265.64621897375577, Width: 10.5, Height: 8
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Text: 'C', X: 297.25, Y: 285.64621897375577, Width: 10.5, Height: 8
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Text: 'C', X: 297.25, Y: 305.64621897375577, Width: 10.5, Height: 8
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Text: 'A', X: 314.75, Y: 305.64621897375577, Width: 10.5, Height: 8
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Text: 'G', X: 332.25, Y: 305.64621897375577, Width: 10.5, Height: 8
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Text: 'C', X: 332.25, Y: 285.64621897375577, Width: 10.5, Height: 8
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Text: 'A', X: 332.25, Y: 265.64621897375577, Width: 10.5, Height: 8
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Text: 'G', X: 318.37477833807435, Y: 254.98191602970206, Width: 10.5, Height: 8
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Text: 'U', X: 310.55163083993995, Y: 239.3279230351797, Width: 10.5, Height: 8
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Text: 'G', X: 379.1834313894313, Y: 206.00086789216408, Width: 10.5, Height: 8
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Text: 'A', X: 386.64779368184605, Y: 221.82908412197654, Width: 10.5, Height: 8
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Text: 'G', X: 386.44836916006005, Y: 239.3279230351797, Width: 10.5, Height: 8
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Text: 'A', X: 378.62522166192565, Y: 254.98191602970206, Width: 10.5, Height: 8
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Text: 'U', X: 364.75, Y: 265.64621897375577, Width: 10.5, Height: 8
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Text: 'G', X: 364.75, Y: 285.64621897375577, Width: 10.5, Height: 8
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Text: 'C', X: 364.75, Y: 305.64621897375577, Width: 10.5, Height: 8
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Text: 'A', X: 382.25, Y: 305.64621897375577, Width: 10.5, Height: 8
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Text: 'G', X: 382.25, Y: 285.64621897375577, Width: 10.5, Height: 8
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Text: 'U', X: 382.25, Y: 265.64621897375577, Width: 10.5, Height: 8
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Text: 'A', X: 382.25, Y: 245.64621897375577, Width: 10.5, Height: 8
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Text: 'U', X: 382.25, Y: 225.64621897375577, Width: 10.5, Height: 8
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Text: 'U', X: 382.25, Y: 205.64621897375577, Width: 10.5, Height: 8
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Text: 'G', X: 366.46515102766756, Y: 197.245587536499, Width: 10.5, Height: 8
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Text: 'A', X: 354.4450337388839, Y: 184.0074288281341, Width: 10.5, Height: 8
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Text: 'G', X: 347.6022509037182, Y: 167.487489703103, Width: 10.5, Height: 8
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Text: 'U', X: 346.74096555616615, Y: 149.62719146443789, Width: 10.5, Height: 8
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Text: 'G', X: 351.9623958489748, Y: 132.525474260563, Width: 10.5, Height: 8
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Text: 'U', X: 337.8202602252438, Y: 118.38333863683204, Width: 10.5, Height: 8
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Text: 'U', X: 323.6781246015129, Y: 104.24120301310109, Width: 10.5, Height: 8
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Text: 'C', X: 309.5359889777819, Y: 90.09906738937013, Width: 10.5, Height: 8
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Text: 'U', X: 295.393853354051, Y: 75.95693176563918, Width: 10.5, Height: 8
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Text: 'A', X: 281.25171773032, Y: 61.81479614190823, Width: 10.5, Height: 8
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Text: 'G', X: 267.1095821065891, Y: 47.67266051817728, Width: 10.5, Height: 8
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Text: 'U', X: 255.41789197697472, Y: 34.65132518705673, Width: 10.5, Height: 8
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Text: 'U', X: 260.24935526139706, Y: 17.831463284422398, Width: 10.5, Height: 8
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Text: 'C', X: 277.06921716403133, Y: 13.0, Width: 10.5, Height: 8
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Text: 'C', X: 290.0905524951519, Y: 24.69169012961447, Width: 10.5, Height: 8
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Text: 'U', X: 304.23268811888283, Y: 38.83382575334542, Width: 10.5, Height: 8
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Text: 'G', X: 318.3748237426138, Y: 52.97596137707637, Width: 10.5, Height: 8
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Text: 'G', X: 332.51695936634474, Y: 67.11809700080732, Width: 10.5, Height: 8
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Text: 'A', X: 360.80123061380664, Y: 95.40236824826923, Width: 10.5, Height: 8
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Text: 'U', X: 374.9433662375376, Y: 109.54450387200018, Width: 10.5, Height: 8
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Text: 'U', X: 391.3422392316954, Y: 104.41558060807307, Width: 10.5, Height: 8
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Text: 'A', X: 408.517826320931, Y: 104.8931761125043, Width: 10.5, Height: 8
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Text: 'G', X: 424.6063434231445, Y: 110.92546479736984, Width: 10.5, Height: 8
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Text: 'U', X: 437.8619682893547, Y: 121.85786154886415, Width: 10.5, Height: 8
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Text: 'U', X: 446.8462858892296, Y: 136.50405308763453, Width: 10.5, Height: 8
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Text: 'G', X: 450.58437594527425, Y: 153.27472904475297, Width: 10.5, Height: 8
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Text: 'G', X: 469.89683855194886, Y: 158.47365086237954, Width: 10.5, Height: 8
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Text: 'C', X: 489.20930115862353, Y: 163.6725726800061, Width: 10.5, Height: 8
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Text: 'A', X: 508.52176376529815, Y: 168.87149449763268, Width: 10.5, Height: 8
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Text: 'G', X: 527.8342263719729, Y: 174.07041631525914, Width: 10.5, Height: 8
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Text: 'A', X: 543.4692703629631, Y: 166.20937895025253, Width: 10.5, Height: 8
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Text: 'G', X: 560.8653586768373, Y: 168.11374772497084, Width: 10.5, Height: 8
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Text: 'A', X: 574.4293708382138, Y: 179.17123763635067, Width: 10.5, Height: 8
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Text: 'A', X: 579.8002601117976, Y: 195.82668892009366, Width: 10.5, Height: 8
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Text: 'A', X: 575.2511997406143, Y: 212.72510774534362, Width: 10.5, Height: 8
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Text: 'A', X: 562.2447853522982, Y: 224.43338233272996, Width: 10.5, Height: 8
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Text: 'U', X: 544.9627870847124, Y: 227.1871152416008, Width: 10.5, Height: 8
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Text: 'G', X: 528.9616436395885, Y: 220.10093732238397, Width: 10.5, Height: 8
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Text: 'C', X: 519.3859784183297, Y: 205.45316805110548, Width: 10.5, Height: 8
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Text: 'U', X: 500.07351581165517, Y: 200.25424623347897, Width: 10.5, Height: 8
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Text: 'G', X: 480.76105320498044, Y: 195.0553244158524, Width: 10.5, Height: 8
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Text: 'C', X: 461.44859059830577, Y: 189.85640259822588, Width: 10.5, Height: 8
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Text: 'C', X: 442.1361279916311, Y: 184.65748078059931, Width: 10.5, Height: 8
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Text: 'U', X: 430.22883332542693, Y: 197.48192360405895, Width: 10.5, Height: 8
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Text: 'A', X: 414.75, Y: 205.64621897375577, Width: 10.5, Height: 8
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Text: 'G', X: 414.75, Y: 225.64621897375577, Width: 10.5, Height: 8
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Text: 'U', X: 414.75, Y: 245.64621897375577, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_3.svg


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Text: 'C', X: 414.75, Y: 285.64621897375577, Width: 10.5, Height: 8
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Text: 'U', X: 414.75, Y: 305.64621897375577, Width: 10.5, Height: 8
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Text: 'A', X: 432.25, Y: 305.64621897375577, Width: 10.5, Height: 8
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Text: '1', X: 5.5, Y: 325.6462189737557, Width: 9.0, Height: 8
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Text: '10', X: 68.50001455787354, Y: 225.62208777549256, Width: 18.0, Height: 8
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Text: '20', X: 135.14213562373095, Y: 319.78835459748666, Width: 18.0, Height: 8
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Text: '30', X: 241.00001455787356, Y: 265.62208777549284, Width: 18.0, Height: 8
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Text: '40', X: 314.35786437626905, Y: 319.7883545974867, Width: 18.0, Height: 8
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Text: '50', X: 391.1509318780603, Y: 193.6331608132449, Width: 18.0, Height: 8
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Text: '60', X: 358.5, Y: 245.64621897375577, Width: 18.0, Height: 8
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Text: '70', X: 291.643853354051, Y: 104.24120301310109, Width: 18.0, Height: 8
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Text: '80', X: 342.9090949900757, Y: 52.97596137707637, Width: 18.0, Height: 8
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Text: '90', X: 471.3457603695754, Y: 139.16118825570487, Width: 18.0, Height: 8
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Text: '100', X: 534.1311796173103, Y: 247.0197979366941, Width: 27.0, Height: 8
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Text: '110', X: 426.5, Y: 245.64621897375577, Width: 27.0, Height: 8
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Text: '114', X: 424.0, Y: 325.64621897375577, Width: 27.0, Height: 8
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Text: 'CLOCK, -21.9 ± 1.0
 kcal/mol, AUC: 0.691', X: 226.27513005589879, Y: 338.4462189737558, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 590.3002601117976, 338.4462189737558)
Updated viewBox: -0.25 0.0 595.5502601117976 343.4462189737558
Updated SVG: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_10.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_10.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGUUACUCAGAUGACCUGAGGAAAGGAGGGAAAGUUCCAGCAGUUUCAUGAGAUGCAGUAUUGAGUGUUCUAGUUCCUGGAAUUAGUUGGCAGAGAAAAUGCUGCCUAGUGCUA', '-structureDBN', '.....(((((.....))))).......(((.....)))((((............(((........))).(((((((...)))))))..(((((........)))))...)))).', '-o', '/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_3.svg', '-title', 'CLOCK, -20.4 ± 1.2\n kcal/mol, AUC: 0.748', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,7,10,12,13,17,18,20,21,25,26,28,29,30,34,35,36,40,43,44,45,46,49,50,52,54,55,58,59,61,62,63,65,66,67,68,69,71,73,74,75,78,79,80,83,84,86,87,88,89,90,93,95,100,101,103,104,107,109,110,111,113', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '97,5,6,102,105,106,16,91,92', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '32,38,39,41,76,77,112,85,22,23,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,70,8,9,72,11,14,15,81,82,19,24,27,94,96,33,98,99,37,42,108,47,48,114,51,53,56,57,60']
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Text: 'U', X: 124.75, Y: 270.02762936221416, Width: 10.5, Height: 8
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Text: 'G', X: 124.75, Y: 290.02762936221416, Width: 10.5, Height: 8
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Text: 'A', X: 124.75, Y: 310.02762936221416, Width: 10.5, Height: 8
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Text: 'G', X: 124.75, Y: 330.02762936221416, Width: 10.5, Height: 8
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Text: 'G', X: 142.25, Y: 330.02762936221416, Width: 10.5, Height: 8
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Text: 'A', X: 159.75, Y: 330.02762936221416, Width: 10.5, Height: 8
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Text: 'A', X: 177.25, Y: 330.02762936221416, Width: 10.5, Height: 8
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Text: 'A', X: 194.75, Y: 330.02762936221416, Width: 10.5, Height: 8
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Text: 'G', X: 212.25, Y: 330.02762936221416, Width: 10.5, Height: 8
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Text: 'G', X: 229.75, Y: 330.02762936221416, Width: 10.5, Height: 8
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Text: 'G', X: 264.75, Y: 330.0276293622142, Width: 10.5, Height: 8
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Text: 'G', X: 264.75, Y: 310.02762936221416, Width: 10.5, Height: 8
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Text: 'G', X: 264.75, Y: 290.02762936221416, Width: 10.5, Height: 8
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Text: 'A', X: 258.1018303951821, Y: 273.83958906255964, Width: 10.5, Height: 8
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Text: 'G', X: 298.2265215799106, Y: 264.8350760562299, Width: 10.5, Height: 8
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Text: 'A', X: 259.96335033865853, Y: 148.03547843174138, Width: 10.5, Height: 8
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Text: 'A', X: 283.1574670327492, Y: 122.56644117239708, Width: 10.5, Height: 8
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Text: 'U', X: 298.22652157991064, Y: 114.02761549263741, Width: 10.5, Height: 8
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Text: 'G', X: 314.75, Y: 108.83506218665315, Width: 10.5, Height: 8
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Text: 'C', X: 314.75, Y: 88.83506218665309, Width: 10.5, Height: 8
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Text: 'A', X: 314.75, Y: 68.83506218665309, Width: 10.5, Height: 8
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Text: 'G', X: 303.0949319257163, Y: 55.78094799847304, Width: 10.5, Height: 8
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Text: 'U', X: 300.4117893094517, Y: 38.48784952668325, Width: 10.5, Height: 8
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Text: 'A', X: 307.56324539329535, Y: 22.51577436610728, Width: 10.5, Height: 8
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Text: 'U', X: 322.2499927277997, Y: 13.0, Width: 10.5, Height: 8
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Text: 'U', X: 339.7500072722003, Y: 13.0, Width: 10.5, Height: 8
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Text: 'G', X: 354.43675460670465, Y: 22.51577436610728, Width: 10.5, Height: 8
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Text: 'A', X: 361.5882106905483, Y: 38.48784952668325, Width: 10.5, Height: 8
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Text: 'G', X: 358.9050680742837, Y: 55.78094799847304, Width: 10.5, Height: 8
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Text: 'U', X: 347.25, Y: 68.83506218665309, Width: 10.5, Height: 8
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Text: 'G', X: 347.25, Y: 88.83506218665309, Width: 10.5, Height: 8
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Text: 'U', X: 347.24999999999994, Y: 108.83506218665315, Width: 10.5, Height: 8
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Text: 'U', X: 362.4635220730685, Y: 113.47168406560641, Width: 10.5, Height: 8
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Text: 'C', X: 376.4996934690722, Y: 120.95068191679857, Width: 10.5, Height: 8
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Text: 'A', X: 404.7839647165341, Y: 92.66641066933664, Width: 10.5, Height: 8
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Text: 'G', X: 418.92610034026507, Y: 78.52427504560569, Width: 10.5, Height: 8
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Text: 'U', X: 433.068235963996, Y: 64.38213942187463, Width: 10.5, Height: 8
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Text: 'U', X: 447.21037158772697, Y: 50.240003798143675, Width: 10.5, Height: 8
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Text: 'C', X: 461.3525072114579, Y: 36.097868174412724, Width: 10.5, Height: 8
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Text: 'C', X: 474.3738425425785, Y: 24.406178044798366, Width: 10.5, Height: 8
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Text: 'G', X: 484.33347760002073, Y: 59.078838562975534, Width: 10.5, Height: 8
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Text: 'A', X: 470.1913419762898, Y: 73.22097418670648, Width: 10.5, Height: 8
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Text: 'U', X: 441.9070707288279, Y: 101.50524543416844, Width: 10.5, Height: 8
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Text: 'U', X: 427.7649351050969, Y: 115.64738105789937, Width: 10.5, Height: 8
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Text: 'A', X: 413.622799481366, Y: 129.78951668163037, Width: 10.5, Height: 8
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Text: 'G', X: 399.480663857635, Y: 143.93165230536138, Width: 10.5, Height: 8
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Text: 'U', X: 408.2150104317964, Y: 161.18837156526942, Width: 10.5, Height: 8
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Text: 'U', X: 412.67634068280114, Y: 180.00803421060712, Width: 10.5, Height: 8
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Text: 'G', X: 412.6177681972572, Y: 199.34917530819448, Width: 10.5, Height: 8
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Text: 'G', X: 431.6032465302292, Y: 205.63818258027246, Width: 10.5, Height: 8
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Text: 'C', X: 450.58872486320126, Y: 211.92718985235044, Width: 10.5, Height: 8
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Text: 'A', X: 469.5742031961733, Y: 218.21619712442842, Width: 10.5, Height: 8
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Text: 'G', X: 488.55968152914534, Y: 224.5052043965064, Width: 10.5, Height: 8
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Text: 'A', X: 504.61655202672387, Y: 217.54622322982507, Width: 10.5, Height: 8
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Text: 'G', X: 521.8761545153152, Y: 220.43700703184916, Width: 10.5, Height: 8
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Text: 'A', X: 534.7892508941391, Y: 232.24812260005186, Width: 10.5, Height: 8
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Text: 'A', X: 539.2040742571046, Y: 249.1821074745002, Width: 10.5, Height: 8
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Text: 'A', X: 533.7011883205442, Y: 265.7944148224709, Width: 10.5, Height: 8
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Text: 'A', X: 520.0498588785917, Y: 276.74392227812916, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_11.svg


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Text: 'G', X: 487.06703442202377, Y: 270.52532976026737, Width: 10.5, Height: 8
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Text: 'C', X: 478.34004471201865, Y: 255.35660668758592, Width: 10.5, Height: 8
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Text: 'U', X: 459.3545663790466, Y: 249.06759941550794, Width: 10.5, Height: 8
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Text: 'G', X: 440.3690880460746, Y: 242.77859214342996, Width: 10.5, Height: 8
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Text: 'C', X: 421.38360971310254, Y: 236.48958487135198, Width: 10.5, Height: 8
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Text: 'C', X: 402.39813138013045, Y: 230.200577599274, Width: 10.5, Height: 8
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Text: 'U', X: 392.1524218947494, Y: 244.38773507148008, Width: 10.5, Height: 8
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Text: 'A', X: 379.13623631568146, Y: 256.0851242233919, Width: 10.5, Height: 8
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Text: 'G', X: 363.93926561280955, Y: 264.7628014158238, Width: 10.5, Height: 8
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Text: 'U', X: 347.25, Y: 270.0276293622142, Width: 10.5, Height: 8
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Text: 'G', X: 347.25, Y: 290.0276293622142, Width: 10.5, Height: 8
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Text: 'C', X: 347.25, Y: 310.0276293622142, Width: 10.5, Height: 8
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Text: 'U', X: 347.25, Y: 330.0276293622142, Width: 10.5, Height: 8
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Text: 'A', X: 364.75, Y: 330.0276293622142, Width: 10.5, Height: 8
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Text: '1', X: 5.5, Y: 350.02762936221416, Width: 9.0, Height: 8
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Text: '10', X: 68.50001455787354, Y: 250.003498163951, Width: 18.0, Height: 8
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Text: '20', X: 135.14213562373095, Y: 344.1697649859451, Width: 18.0, Height: 8
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Text: '30', X: 241.00001455787356, Y: 290.0034981639513, Width: 18.0, Height: 8
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Text: '40', X: 291.0, Y: 310.0276293622142, Width: 18.0, Height: 8
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Text: '50', X: 230.1114772885992, Y: 157.60907922366857, Width: 18.0, Height: 8
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Text: '60', X: 288.6256036554373, Y: 9.502875440715115, Width: 18.0, Height: 8
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Text: '70', X: 368.8478870287494, Y: 101.33497630873404, Width: 18.0, Height: 8
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Text: '80', X: 498.08036796306453, Y: 68.76691513284345, Width: 18.0, Height: 8
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Text: '90', X: 434.1422538023072, Y: 186.65270424730042, Width: 18.0, Height: 8
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Text: '100', X: 490.6836858187893, Y: 298.16391849518067, Width: 27.0, Height: 8
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Text: '110', X: 355.7369803404464, Y: 280.9763045826923, Width: 27.0, Height: 8
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Text: '114', X: 356.5, Y: 350.0276293622142, Width: 27.0, Height: 8
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Text: 'CLOCK, -20.4 ± 1.2
 kcal/mol, AUC: 0.748', X: 205.9770371285523, Y: 362.8276293622142, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 1.5028754407151155, 549.7040742571046, 362.8276293622142)
Updated viewBox: -0.25 -3.4971245592848845 554.9540742571046 371.3247539214991
Updated SVG: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_3.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_3.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGUUACUCAGAUGACCUGAGGAAAGGAGGGAAAGUUCCAGCAGUUUCAUGAGAUGCAGUAUUGAGUGUUCUAGUUCCUGGAAUUAGUUGGCAGAGAAAAUGCUGCCUAGUGCUA', '-structureDBN', '((.((((.......(((......))).(((.....)))........(((..((((...))))..))).(((((...))))).......(((((........))))).)))))).', '-o', '/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_11.svg', '-title', 'CLOCK, -19.9 ± 1.2\n kcal/mol, AUC: 0.686', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,7,10,12,13,17,18,20,21,25,26,28,29,30,34,35,36,40,43,44,45,46,49,50,52,54,55,58,59,61,62,63,65,66,67,68,69,71,73,74,75,78,79,80,83,84,86,87,88,89,90,93,95,100,101,103,104,107,109,110,111,113', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '97,5,6,102,105,106,16,91,92', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '32,38,39,41,76,77,112,85,22,23,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,70,8,9,72,11,14,15,81,82,19,24,27,94,96,33,98,99,37,42,108,47,48,114,51,53,56,57,60']
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Text: 'U', X: 285.68841546790804, Y: 88.65298324943092, Width: 10.5, Height: 8
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Text: 'A', X: 314.88148499002625, Y: 90.10583165000662, Width: 10.5, Height: 8
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Text: 'U', X: 331.66145765981423, Y: 79.22316115048454, Width: 10.5, Height: 8
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Text: 'G', X: 337.8345465678255, Y: 62.84808191388845, Width: 10.5, Height: 8
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Text: 'A', X: 352.5170304570536, Y: 53.32574430626448, Width: 10.5, Height: 8
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Text: 'G', X: 369.98598755474814, Y: 54.36775418621903, Width: 10.5, Height: 8
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Text: 'A', X: 386.7659645448032, Y: 43.48509034811286, Width: 10.5, Height: 8
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Text: 'U', X: 403.54594153485823, Y: 32.602426510006694, Width: 10.5, Height: 8
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Text: 'G', X: 420.3259185249133, Y: 21.719762671900526, Width: 10.5, Height: 8
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Text: 'C', X: 435.4988065439471, Y: 13.0, Width: 10.5, Height: 8
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Text: 'A', X: 450.9416349201832, Y: 21.232244143277626, Width: 10.5, Height: 8
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Text: 'G', X: 452.1599459877575, Y: 38.689807261738224, Width: 10.5, Height: 8
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Text: 'U', X: 438.01024726183584, Y: 48.98722528073995, Width: 10.5, Height: 8
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Text: 'A', X: 421.2302702717808, Y: 59.86988911884612, Width: 10.5, Height: 8
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Text: 'U', X: 404.45029328172575, Y: 70.75255295695229, Width: 10.5, Height: 8
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Text: 'U', X: 387.6703162916706, Y: 81.63521679505845, Width: 10.5, Height: 8
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Text: 'G', X: 381.49722553595143, Y: 98.01028780319928, Width: 10.5, Height: 8
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Text: 'A', X: 366.8147475597698, Y: 107.53262157591183, Width: 10.5, Height: 8
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Text: 'G', X: 349.34579722153757, Y: 106.49061673889008, Width: 10.5, Height: 8
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Text: 'U', X: 332.56582455174953, Y: 117.37328723841216, Width: 10.5, Height: 8
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Text: 'G', X: 315.78585188196155, Y: 128.25595773793424, Width: 10.5, Height: 8
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Text: 'U', X: 321.9863284397367, Y: 144.6206786477598, Width: 10.5, Height: 8
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Text: 'U', X: 325.6887303546938, Y: 161.72454429445276, Width: 10.5, Height: 8
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Text: 'C', X: 345.6887303546938, Y: 161.72454429445276, Width: 10.5, Height: 8
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Text: 'U', X: 365.6887303546938, Y: 161.72454429445276, Width: 10.5, Height: 8
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Text: 'A', X: 385.6887303546938, Y: 161.72454429445276, Width: 10.5, Height: 8
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Text: 'G', X: 405.6887303546938, Y: 161.72454429445276, Width: 10.5, Height: 8
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Text: 'U', X: 423.16347824161517, Y: 162.66474543300984, Width: 10.5, Height: 8
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Text: 'U', X: 431.6405562001203, Y: 177.97454429445276, Width: 10.5, Height: 8
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Text: 'C', X: 423.16347824161517, Y: 193.28434315589556, Width: 10.5, Height: 8
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Text: 'C', X: 405.6887303546938, Y: 194.22454429445276, Width: 10.5, Height: 8
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Text: 'U', X: 385.6887303546938, Y: 194.22454429445276, Width: 10.5, Height: 8
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Text: 'G', X: 365.6887303546938, Y: 194.22454429445276, Width: 10.5, Height: 8
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Text: 'G', X: 345.6887303546938, Y: 194.22454429445276, Width: 10.5, Height: 8
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Text: 'A', X: 325.6887303546938, Y: 194.22454429445276, Width: 10.5, Height: 8
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Text: 'A', X: 321.55441399097793, Y: 212.75484520580625, Width: 10.5, Height: 8
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Text: 'U', X: 314.4910614131562, Y: 230.3779457849319, Width: 10.5, Height: 8
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Text: 'U', X: 304.68291127464255, Y: 246.63416965522146, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_7.svg


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Text: 'A', X: 292.3857968152609, Y: 261.0994936969934, Width: 10.5, Height: 8
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Text: 'G', X: 277.920472773489, Y: 273.39660815637507, Width: 10.5, Height: 8
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Text: 'U', X: 261.66424890319934, Y: 283.20475829488873, Width: 10.5, Height: 8
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Text: 'U', X: 244.04114832407373, Y: 290.26811087271045, Width: 10.5, Height: 8
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Text: 'G', X: 225.51084741272018, Y: 294.4024272364264, Width: 10.5, Height: 8
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Text: 'G', X: 225.51084741272018, Y: 314.4024272364263, Width: 10.5, Height: 8
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Text: 'C', X: 225.51084741272018, Y: 334.4024272364263, Width: 10.5, Height: 8
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Text: 'A', X: 225.51084741272018, Y: 354.4024272364263, Width: 10.5, Height: 8
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Text: 'G', X: 225.51084741272018, Y: 374.4024272364263, Width: 10.5, Height: 8
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Text: 'A', X: 237.16591548700387, Y: 387.4565414246065, Width: 10.5, Height: 8
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Text: 'G', X: 239.84905810326848, Y: 404.7496398963963, Width: 10.5, Height: 8
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Text: 'A', X: 232.6976020194248, Y: 420.72171505697224, Width: 10.5, Height: 8
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Text: 'A', X: 218.0108546849205, Y: 430.23748942307947, Width: 10.5, Height: 8
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Text: 'A', X: 200.51084014051986, Y: 430.23748942307947, Width: 10.5, Height: 8
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Text: 'A', X: 185.82409280601556, Y: 420.72171505697224, Width: 10.5, Height: 8
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Text: 'U', X: 178.6726367221719, Y: 404.7496398963963, Width: 10.5, Height: 8
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Text: 'G', X: 181.3557793384365, Y: 387.4565414246065, Width: 10.5, Height: 8
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Text: 'C', X: 193.01084741272018, Y: 374.4024272364263, Width: 10.5, Height: 8
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Text: 'U', X: 193.01084741272018, Y: 354.4024272364263, Width: 10.5, Height: 8
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Text: 'G', X: 193.01084741272018, Y: 334.4024272364263, Width: 10.5, Height: 8
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Text: 'C', X: 193.01084741272018, Y: 314.4024272364263, Width: 10.5, Height: 8
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Text: 'C', X: 193.01084741272018, Y: 294.4024272364263, Width: 10.5, Height: 8
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Text: 'U', X: 183.62928328648843, Y: 292.7026461125896, Width: 10.5, Height: 8
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Text: 'A', X: 174.41632031626037, Y: 290.2481981842856, Width: 10.5, Height: 8
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Text: 'G', X: 165.90470230101255, Y: 308.34660581486213, Width: 10.5, Height: 8
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Text: 'U', X: 157.39308428576476, Y: 326.4450134454386, Width: 10.5, Height: 8
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Text: 'G', X: 148.88146627051697, Y: 344.5434210760151, Width: 10.5, Height: 8
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Text: 'C', X: 145.0658317782734, Y: 361.62238279567475, Width: 10.5, Height: 8
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Text: 'U', X: 145.0658317782734, Y: 381.62238279567475, Width: 10.5, Height: 8
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Text: 'A', X: 162.5658317782734, Y: 381.62238279567475, Width: 10.5, Height: 8
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Text: '1', X: 113.3158317782734, Y: 401.62238279567475, Width: 9.0, Height: 8
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Text: '10', X: 87.0099229930913, Y: 247.82654906675202, Width: 18.0, Height: 8
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Text: '20', X: -4.0, Y: 112.8679757176447, Width: 18.0, Height: 8
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Text: '30', X: 84.79246666103222, Y: 72.0577527938508, Width: 18.0, Height: 8
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Text: '40', X: 180.03848131236188, Y: 42.79714150735498, Width: 18.0, Height: 8
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Text: '50', X: 318.5076363544199, Y: 50.30376574266967, Width: 18.0, Height: 8
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Text: '60', X: 428.362934109887, Y: 76.64986610890111, Width: 18.0, Height: 8
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Text: '70', X: 341.9387303546938, Y: 141.72454429445276, Width: 18.0, Height: 8
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Text: '80', X: 341.9387303546938, Y: 214.22454429445276, Width: 18.0, Height: 8
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Text: '90', X: 241.76084741272018, Y: 314.4024272364263, Width: 18.0, Height: 8
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Text: '100', X: 150.60066080587902, Y: 407.41220835070976, Width: 27.0, Height: 8
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Text: '110', X: 167.24149191634126, Y: 334.95663146068637, Width: 27.0, Height: 8
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Text: '114', X: 154.3158317782734, Y: 401.62238279567475, Width: 27.0, Height: 8
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Text: 'CLOCK, -19.9 ± 1.2
 kcal/mol, AUC: 0.686', X: 169.95247019232067, Y: 448.0374894230795, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 462.6599459877575, 448.0374894230795)
Updated viewBox: -9.0 0.0 476.6599459877575 453.0374894230795
Updated SVG: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_11.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_11.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGUUACUCAGAUGACCUGAGGAAAGGAGGGAAAGUUCCAGCAGUUUCAUGAGAUGCAGUAUUGAGUGUUCUAGUUCCUGGAAUUAGUUGGCAGAGAAAAUGCUGCCUAGUGCUA', '-structureDBN', '.....(((((.....))))).............(((((((......(((..((((...))))..))).........))))))).(((.(((((........)))))....))).', '-o', '/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_7.svg', '-title', 'CLOCK, -22.7 ± 1.1\n kcal/mol, AUC: 0.714', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,7,10,12,13,17,18,20,21,25,26,28,29,30,34,35,36,40,43,44,45,46,49,50,52,54,55,58,59,61,62,63,65,66,67,68,69,71,73,74,75,78,79,80,83,84,86,87,88,89,90,93,95,100,101,103,104,107,109,110,111,113', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '97,5,6,102,105,106,16,91,92', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '32,38,39,41,76,77,112,85,22,23,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,70,8,9,72,11,14,15,81,82,19,24,27,94,96,33,98,99,37,42,108,47,48,114,51,53,56,57,60']
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Text: 'G', X: 22.25, Y: 392.9688351400873, Width: 10.5, Height: 8
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Text: 'U', X: 39.75, Y: 392.9688351400873, Width: 10.5, Height: 8
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Text: 'U', X: 57.25, Y: 392.9688351400873, Width: 10.5, Height: 8
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Text: 'A', X: 74.75, Y: 392.9688351400873, Width: 10.5, Height: 8
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Text: 'C', X: 92.25, Y: 392.9688351400873, Width: 10.5, Height: 8
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Text: 'U', X: 92.25, Y: 372.9688351400873, Width: 10.5, Height: 8
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Text: 'C', X: 92.25, Y: 352.9688351400873, Width: 10.5, Height: 8
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Text: 'A', X: 92.25, Y: 332.9688351400873, Width: 10.5, Height: 8
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Text: 'G', X: 92.25, Y: 312.9688351400874, Width: 10.5, Height: 8
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Text: 'A', X: 85.6018303951821, Y: 296.78079484043275, Width: 10.5, Height: 8
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Text: 'U', X: 92.32804965122153, Y: 280.6250286141793, Width: 10.5, Height: 8
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Text: 'G', X: 108.5, Y: 273.9378147134349, Width: 10.5, Height: 8
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Text: 'A', X: 124.6719503487785, Y: 280.6250286141793, Width: 10.5, Height: 8
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Text: 'C', X: 131.3981696048179, Y: 296.78079484043275, Width: 10.5, Height: 8
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Text: 'C', X: 124.75, Y: 312.9688351400874, Width: 10.5, Height: 8
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Text: 'U', X: 124.75, Y: 332.9688351400873, Width: 10.5, Height: 8
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Text: 'G', X: 124.75, Y: 352.9688351400873, Width: 10.5, Height: 8
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Text: 'A', X: 124.75, Y: 372.9688351400873, Width: 10.5, Height: 8
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Text: 'G', X: 142.25, Y: 392.9688351400873, Width: 10.5, Height: 8
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Text: 'A', X: 159.75, Y: 392.9688351400873, Width: 10.5, Height: 8
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Text: 'A', X: 177.25, Y: 392.9688351400873, Width: 10.5, Height: 8
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Text: 'A', X: 194.75, Y: 392.9688351400873, Width: 10.5, Height: 8
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Text: 'G', X: 212.25, Y: 392.9688351400873, Width: 10.5, Height: 8
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Text: 'G', X: 264.75, Y: 392.9688351400874, Width: 10.5, Height: 8
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Text: 'G', X: 282.25, Y: 392.9688351400874, Width: 10.5, Height: 8
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Text: 'A', X: 334.75, Y: 392.9688351400874, Width: 10.5, Height: 8
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Text: 'G', X: 369.75, Y: 392.9688351400874, Width: 10.5, Height: 8
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Text: 'U', X: 369.75, Y: 372.9688351400874, Width: 10.5, Height: 8
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Text: 'U', X: 369.75, Y: 352.9688351400874, Width: 10.5, Height: 8
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Text: 'C', X: 369.75, Y: 332.9688351400874, Width: 10.5, Height: 8
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Text: 'C', X: 369.75, Y: 312.9688351400874, Width: 10.5, Height: 8
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Text: 'A', X: 369.75, Y: 292.9688351400874, Width: 10.5, Height: 8
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Text: 'G', X: 369.75, Y: 272.9688351400874, Width: 10.5, Height: 8
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Text: 'C', X: 353.88197781330854, Y: 265.5894536010951, Width: 10.5, Height: 8
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Text: 'A', X: 340.9363507204029, Y: 253.8140496085869, Width: 10.5, Height: 8
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Text: 'G', X: 332.09103175971313, Y: 238.71405846623804, Width: 10.5, Height: 8
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Text: 'U', X: 328.15084996409286, Y: 221.66341720460764, Width: 10.5, Height: 8
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Text: 'U', X: 329.47431956213364, Y: 204.21355106648457, Width: 10.5, Height: 8
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Text: 'U', X: 335.9410190335561, Y: 187.9522104710215, Width: 10.5, Height: 8
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Text: 'C', X: 346.962548174312, Y: 174.35900277692582, Width: 10.5, Height: 8
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Text: 'A', X: 338.1876573435891, Y: 156.38676610730414, Width: 10.5, Height: 8
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Text: 'U', X: 329.4127665128662, Y: 138.41452943768246, Width: 10.5, Height: 8
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Text: 'G', X: 313.90379311792606, Y: 130.30761936626493, Width: 10.5, Height: 8
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Text: 'A', X: 306.22576367032985, Y: 114.58190442312616, Width: 10.5, Height: 8
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Text: 'G', X: 309.37141170406125, Y: 97.3669357876945, Width: 10.5, Height: 8
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Text: 'A', X: 300.5965280080662, Y: 79.39469563456498, Width: 10.5, Height: 8
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Text: 'U', X: 291.82164431207116, Y: 61.42245548143546, Width: 10.5, Height: 8
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Text: 'G', X: 283.04676061607614, Y: 43.450215328305944, Width: 10.5, Height: 8
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Text: 'C', X: 276.2246926325673, Y: 27.334689264264625, Width: 10.5, Height: 8
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Text: 'A', X: 286.2629930658771, Y: 13.0, Width: 10.5, Height: 8
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Text: 'G', X: 303.73983081596333, Y: 13.900518822440745, Width: 10.5, Height: 8
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Text: 'U', X: 338.57630195289664, Y: 83.10774978170252, Width: 10.5, Height: 8
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Text: 'G', X: 376.1674327624473, Y: 160.0998051770011, Width: 10.5, Height: 8
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Text: 'U', X: 393.66430583229715, Y: 159.7689989231867, Width: 10.5, Height: 8
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Text: 'U', X: 410.46380801447526, Y: 164.67070540470837, Width: 10.5, Height: 8
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Text: 'C', X: 425.03736203067695, Y: 174.35892109888306, Width: 10.5, Height: 8
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Text: 'U', X: 436.05892837736576, Y: 187.9521206952083, Width: 10.5, Height: 8
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Text: 'A', X: 442.52566091623476, Y: 204.21346658879082, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'U', X: 402.25, Y: 292.9688351400874, Width: 10.5, Height: 8
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Text: 'G', X: 402.25, Y: 312.9688351400874, Width: 10.5, Height: 8
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Text: 'G', X: 402.25, Y: 332.9688351400874, Width: 10.5, Height: 8
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Text: 'A', X: 402.25, Y: 352.9688351400874, Width: 10.5, Height: 8
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Text: 'A', X: 402.25, Y: 372.9688351400874, Width: 10.5, Height: 8
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Text: 'U', X: 402.25, Y: 392.9688351400874, Width: 10.5, Height: 8
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Text: 'U', X: 419.75, Y: 392.9688351400874, Width: 10.5, Height: 8
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Text: 'A', X: 437.25, Y: 392.9688351400874, Width: 10.5, Height: 8
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Text: 'G', X: 437.25, Y: 372.9688351400874, Width: 10.5, Height: 8
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Text: 'U', X: 437.25, Y: 352.9688351400874, Width: 10.5, Height: 8
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Text: 'U', X: 425.1610934304466, Y: 338.6914261350038, Width: 10.5, Height: 8
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Text: 'C', X: 395.329317270178, Y: 291.76335434981166, Width: 10.5, Height: 8
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Text: 'A', X: 349.57301568735363, Y: 262.4898081080209, Width: 10.5, Height: 8
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Text: 'G', X: 335.44768015137305, Y: 252.1590092497429, Width: 10.5, Height: 8
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Text: 'A', X: 329.21056058795216, Y: 235.80820350183473, Width: 10.5, Height: 8
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Text: 'A', X: 332.8669906392381, Y: 218.69443628551772, Width: 10.5, Height: 8
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Text: 'A', X: 345.241369594447, Y: 206.32005733030888, Width: 10.5, Height: 8
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Text: 'A', X: 362.355136810764, Y: 202.66362727902293, Width: 10.5, Height: 8
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Text: 'U', X: 378.7059425586721, Y: 208.90074684244382, Width: 10.5, Height: 8
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Text: 'G', X: 389.03674141695006, Y: 223.0260823784244, Width: 10.5, Height: 8
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Text: 'C', X: 390.02601641127893, Y: 240.49811271378695, Width: 10.5, Height: 8
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Text: 'U', X: 404.1681520350099, Y: 254.6402483375179, Width: 10.5, Height: 8
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Text: 'G', X: 418.31028765874083, Y: 268.78238396124885, Width: 10.5, Height: 8
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Text: 'C', X: 432.4524232824718, Y: 282.9245195849798, Width: 10.5, Height: 8
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Text: 'C', X: 446.59455890620274, Y: 297.06665520871076, Width: 10.5, Height: 8
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Text: 'U', X: 463.5844909982815, Y: 297.9843637636281, Width: 10.5, Height: 8
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Text: 'A', X: 477.4715284016925, Y: 307.81544578146725, Width: 10.5, Height: 8
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Text: 'G', X: 483.98277180920087, Y: 323.53497792378613, Width: 10.5, Height: 8
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Text: 'G', X: 469.75, Y: 352.9688351400874, Width: 10.5, Height: 8
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Text: 'C', X: 469.75, Y: 372.9688351400874, Width: 10.5, Height: 8
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Text: 'U', X: 469.75, Y: 392.9688351400874, Width: 10.5, Height: 8
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Text: 'A', X: 487.25, Y: 392.9688351400874, Width: 10.5, Height: 8
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Text: '1', X: 5.5, Y: 412.9688351400873, Width: 9.0, Height: 8
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Text: '10', X: 68.50001455787354, Y: 312.9447039418242, Width: 18.0, Height: 8
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Text: '30', X: 296.0, Y: 412.9688351400874, Width: 18.0, Height: 8
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Text: '60', X: 335.24877471403613, Y: 38.38838577944841, Width: 18.0, Height: 8
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Text: '80', X: 418.5, Y: 332.9688351400874, Width: 18.0, Height: 8
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Text: '90', X: 391.579317270178, Y: 320.04762559727357, Width: 18.0, Height: 8
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Text: '100', X: 382.58947593618075, Y: 193.00177304609824, Width: 27.0, Height: 8
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Text: '110', X: 490.8702213053133, Y: 349.0127714369431, Width: 27.0, Height: 8
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Text: '114', X: 479.0, Y: 412.9688351400874, Width: 27.0, Height: 8
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Text: 'CLOCK, -22.7 ± 1.1
 kcal/mol, AUC: 0.714', X: 180.0, Y: 425.7688351400874, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.0, 517.8702213053133, 425.7688351400874)
Updated viewBox: -0.25 0.0 523.1202213053133 430.7688351400874
Updated SVG: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_7.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_7.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGUUACUCAGAUGACCUGAGGAAAGGAGGGAAAGUUCCAGCAGUUUCAUGAGAUGCAGUAUUGAGUGUUCUAGUUCCUGGAAUUAGUUGGCAGAGAAAAUGCUGCCUAGUGCUA', '-structureDBN', '((.((((.......(((......))).(((((......((((.((...((.....)).....)).))))....)))))..........(((((........))))).)))))).', '-o', '/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_1.svg', '-title', 'CLOCK, -19.8 ± 1.1\n kcal/mol, AUC: 0.799', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,7,10,12,13,17,18,20,21,25,26,28,29,30,34,35,36,40,43,44,45,46,49,50,52,54,55,58,59,61,62,63,65,66,67,68,69,71,73,74,75,78,79,80,83,84,86,87,88,89,90,93,95,100,101,103,104,107,109,110,111,113', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '97,5,6,102,105,106,16,91,92', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '32,38,39,41,76,77,112,85,22,23,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,70,8,9,72,11,14,15,81,82,19,24,27,94,96,33,98,99,37,42,108,47,48,114,51,53,56,57,60']Output file: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_1.svg


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Text: 'C', X: 71.71250560354478, Y: 438.22972006953347, Width: 10.5, Height: 8
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Text: 'C', X: 57.57036997981383, Y: 424.0875844458025, Width: 10.5, Height: 8
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Text: 'U', X: 43.42823435608287, Y: 409.94544882207157, Width: 10.5, Height: 8
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Text: 'G', X: 125.94268728984204, Y: 362.3049025479865, Width: 10.5, Height: 8
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Text: 'A', X: 125.94268728984204, Y: 342.3049025479865, Width: 10.5, Height: 8
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Text: 'A', X: 125.94268728984204, Y: 322.3049025479865, Width: 10.5, Height: 8
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Text: 'C', X: 125.94280593211352, Y: 240.01515034854054, Width: 10.5, Height: 8
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Text: 'G', X: 150.9249412887586, Y: 218.49823336726007, Width: 10.5, Height: 8
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Text: 'C', X: 158.68053315221184, Y: 200.0631907893993, Width: 10.5, Height: 8
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Text: 'U', X: 186.7366638030085, Y: 133.37343868374114, Width: 10.5, Height: 8
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Text: 'U', X: 199.11449476850584, Y: 72.0310204266525, Width: 10.5, Height: 8
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Text: 'G', X: 199.11449476850584, Y: 52.0310204266525, Width: 10.5, Height: 8
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Text: 'U', X: 231.53644511728433, Y: 19.68721390074461, Width: 10.5, Height: 8
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Text: 'G', X: 238.26266437332376, Y: 35.84298012699787, Width: 10.5, Height: 8
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Text: 'C', X: 231.61449476850584, Y: 52.0310204266525, Width: 10.5, Height: 8
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Text: 'A', X: 231.61449476850584, Y: 72.0310204266525, Width: 10.5, Height: 8
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Text: 'G', X: 245.2033840913656, Y: 82.4777962527653, Width: 10.5, Height: 8
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Text: 'U', X: 252.9597555663588, Y: 97.7628130905673, Width: 10.5, Height: 8
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Text: 'U', X: 246.34690171748463, Y: 130.53498842575823, Width: 10.5, Height: 8
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Text: 'U', X: 233.27027102344974, Y: 141.61626849088645, Width: 10.5, Height: 8
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Text: 'G', X: 216.69365216105976, Y: 145.97617047155506, Width: 10.5, Height: 8
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Text: 'A', X: 230.11844075885895, Y: 641.2676392842945, Width: 10.5, Height: 8
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Text: 'A', X: 210.76137950785431, Y: 694.1742384948781, Width: 10.5, Height: 8
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Text: 'A', X: 193.67260752661107, Y: 690.4027160930741, Width: 10.5, Height: 8
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Text: 'U', X: 181.3817880185775, Y: 677.9453381637032, Width: 10.5, Height: 8
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Text: 'G', X: 177.84061592857503, Y: 660.8073508465409, Width: 10.5, Height: 8
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Text: 'C', X: 184.18763469039658, Y: 644.4988910206921, Width: 10.5, Height: 8
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Text: 'C', X: 156.1787991480767, Y: 569.5622168780317, Width: 10.5, Height: 8
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Text: 'G', X: 112.88235214430027, Y: 586.2351326230489, Width: 10.5, Height: 8
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Text: 'C', X: 92.04348162156111, Y: 639.5109096038616, Width: 10.5, Height: 8
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Text: 'U', X: 92.04348162156111, Y: 659.5109096038616, Width: 10.5, Height: 8
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Text: 'A', X: 109.54348162156111, Y: 659.5109096038616, Width: 10.5, Height: 8
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Text: '1', X: 60.293481621561114, Y: 679.5109096038616, Width: 9.0, Height: 8
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Text: '10', X: 40.34385970570017, Y: 523.1445564191094, Width: 18.0, Height: 8
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Text: '20', X: -4.0, Y: 365.3627595838412, Width: 18.0, Height: 8
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Text: '40', X: 128.7398987108979, Y: 210.7426415038068, Width: 18.0, Height: 8
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Text: '50', X: 178.53025745518457, Y: 41.232480984728795, Width: 18.0, Height: 8
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Text: '80', X: 200.17823456909508, Y: 400.80525284629067, Width: 18.0, Height: 8
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Text: '90', X: 208.6082004397776, Y: 569.9155870890494, Width: 18.0, Height: 8
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Text: '100', X: 155.4965691667542, Y: 687.3792692662869, Width: 27.0, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_13.svg


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Text: '114', X: 101.29348162156111, Y: 679.5109096038616, Width: 27.0, Height: 8
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Text: 'CLOCK, -19.8 ± 1.1
 kcal/mol, AUC: 0.799', X: 68.88233685674348, Y: 711.974238494878, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 287.2223587473512, 711.974238494878)
Updated viewBox: -9.0 0.0 301.2223587473512 716.974238494878
Updated SVG: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_1.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AGUUACUCAGAUGACCUGAGGAAAGGAGGGAAAGUUCCAGCAGUUUCAUGAGAUGCAGUAUUGAGUGUUCUAGUUCCUGGAAUUAGUUGGCAGAGAAAAUGCUGCCUAGUGCUA', '-structureDBN', '.....(((((.....)))))((((....(((....))).....)))).......((((((((...(((((((((((...)))))))..)))).....)))))))).........', '-o', '/disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_13.svg', '-title', 'CLOCK, -22.5 ± 1.1\n kcal/mol, AUC: 0.641', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,3,4,7,10,12,13,17,18,20,21,25,26,28,29,30,34,35,36,40,43,44,45,46,49,50,52,54,55,58,59,61,62,63,65,66,67,68,69,71,73,74,75,78,79,80,83,84,86,87,88,89,90,93,95,100,101,103,104,107,109,110,111,113', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '97,5,6,102,105,106,16,91,92', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '32,38,39,41,76,77,112,85,22,23,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,1,70,8,9,72,11,14,15,81,82,19,24,27,94,96,33,98,99,37,42,108,47,48,114,51,53,56,57,60']
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Text: 'U', X: 157.89916608366875, Y: 184.95459076789555, Width: 10.5, Height: 8
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Text: 'G', X: 194.28181180087475, Y: 243.78901955769877, Width: 10.5, Height: 8
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Text: 'A', X: 196.41392458872713, Y: 41.02382063074401, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 215.31932876691826, Y: 47.54959206860735, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 234.2247329451094, Y: 54.075363506470694, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 253.13013712330053, Y: 60.601134944334035, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 272.03554130149166, Y: 67.12690638219749, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 289.5049101249131, Y: 66.09194120825691, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 302.6160820393894, Y: 77.68276391542702, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 303.7312096731759, Y: 95.14719892948813, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 312.5261103249125, Y: 113.10965206167702, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 321.3210109766491, Y: 131.07210519386592, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 330.11591162838573, Y: 149.03455832605485, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 347.2500077476446, Y: 152.59443896675035, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 361.07308548234226, Y: 163.32628512388962, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 368.7686252823612, Y: 179.04343076762294, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 368.7686233563999, Y: 196.54343076762288, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 361.0730800968825, Y: 212.2605747174916, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 347.25, Y: 222.992417832035, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 347.25, Y: 242.992417832035, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 347.25, Y: 262.992417832035, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 347.25, Y: 282.99241783203496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 347.25, Y: 302.99241783203496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 347.25, Y: 322.99241783203496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 347.25, Y: 342.99241783203496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 347.25, Y: 362.99241783203496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 364.75, Y: 362.99241783203496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 382.25, Y: 362.99241783203496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 399.75, Y: 362.99241783203496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 417.25, Y: 362.99241783203496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 434.75, Y: 362.99241783203496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 452.25, Y: 362.99241783203496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 469.75, Y: 362.99241783203496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 487.25, Y: 362.99241783203496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 504.75, Y: 362.99241783203496, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 5.5, Y: 382.9924178320349, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: 68.50001455787354, Y: 282.96828663377175, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: 121.0, Y: 382.9924178320349, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: 107.04655686373337, Y: 215.5747508699273, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 207.7766726993792, Y: 233.6591245636116, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 223.5, Y: 382.9924178320349, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 291.0, Y: 262.992417832035, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 239.71875581830733, Y: 106.6431832529932, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 155.9057896272973, Y: 8.0, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 326.73856345710135, Y: 104.31475140994036, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '100', X: 359.0, Y: 262.992417832035, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '110', X: 426.5, Y: 382.99241783203496, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '114', X: 496.5, Y: 382.99241783203496, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'CLOCK, -22.5 ± 1.1
 kcal/mol, AUC: 0.641', X: 188.75, Y: 395.79241783203497, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 523.5, 395.79241783203497)
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Updated SVG: /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_13.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/e3537158-23dc-4270-a700-89197b5b9150/final_image/CLOCK_fold_final_13.svg
