Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/final_image/ATP13A3_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 159.29 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 159.29 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 159.29 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.99 MB
Based on canonical annotations, the following gene is in your area of interest: ATP13A3(-)
write fasta - Elapsed time since the previous call: 1.17 seconds
write fasta - Current memory usage: 172.99 MB
Length of region: 127 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.20 seconds
write dat - Current memory usage: 176.54 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/fasta/ATP13A3.fasta" "/disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/ct/ATP13A3.ct" --SHAPE "ATP13A3.dat"

fold - Elapsed time since the previous call: 0.22 seconds
fold - Current memory usage: 176.54 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/ct/ATP13A3.ct" "/disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/fold_FE/ATP13A3.txt" -sh "ATP13A3.dat"

efn2 - Elapsed time since the previous call: 0.57 seconds
efn2 - Current memory usage: 176.54 MB
This region has 5 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/ct/ATP13A3.ct" 1 "/disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/fold_dbn/ATP13A3_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 176.54 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/ct/ATP13A3.ct" 2 "/disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/fold_dbn/ATP13A3_temp2.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.54 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/ct/ATP13A3.ct" 3 "/disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/fold_dbn/ATP13A3_temp3.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.54 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/ct/ATP13A3.ct" 4 "/disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/fold_dbn/ATP13A3_temp4.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.54 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/ct/ATP13A3.ct" 5 "/disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/fold_dbn/ATP13A3_temp5.dbn"

ct2dot - Elapsed time since the previous call: 0.02 seconds
ct2dot - Current memory usage: 176.54 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AUCAGGGUCAAGAAGAUGAAAUGGAGAUUUAUGGUUACAAUUUGAGUCGCUGGAAGCUUGCCAUAGUUUCUUUAGGAGUGAUUUGCUCUGGUGGGUUUCUCCUCCUCCUCCUCUAUUGGAUGCCUGA', '-structureDBN', '.((((((((....(((.((...((((...((((((.....(((.((...)).)))....))))))........(((((.(((((((....))))))).))))).)))))).)))....))).)))))', '-o', '/disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/final_image/ATP13A3_fold_1.svg', '-title', 'ATP13A3, -30.5 ± 1.5\n kcal/mol, AUC: 0.691', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,5,6,7,8,12,15,17,18,22,23,24,26,28,29,30,32,33,34,35,36,41,42,43,44,46,47,49,51,52,53,56,58,59,60,64,66,67,68,69,71,72,73,75,76,78,79,80,82,83,84,85,87,89,90,91,92,93,94,95,96,97,98,100,103,106,109,112,114,116,117,118,119,121,122,125,126', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '99,101,102,104,105,74,108,77,110,111,19,120,61', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '4,37,48,81,50,21,54,86,88,25,124,63,62,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '1,65,3,70,9,10,11,13,14,16,20,27,38,39,40,107,45,113,115,55,57,123,127']
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Text: 'U', X: 415.0405197850964, Y: 529.0532682884796, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)

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Text: 'U', X: 202.3007374366411, Y: 450.9589219480374, Width: 10.5, Height: 8
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Text: 'C', X: 210.81222529855907, Y: 469.05739078869965, Width: 10.5, Height: 8
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Text: 'U', X: 219.32371316047704, Y: 487.155859629362, Width: 10.5, Height: 8
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Text: 'A', X: 236.39974000151955, Y: 490.98460711698715, Width: 10.5, Height: 8
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Text: 'U', X: 250.05243149390304, Y: 501.93239296681986, Width: 10.5, Height: 8
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Text: 'U', X: 257.4999851159287, Y: 517.7685523827595, Width: 10.5, Height: 8
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Text: 'G', X: 257.2249254703244, Y: 535.2663905975608, Width: 10.5, Height: 8
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Text: 'G', X: 249.28329730227358, Y: 550.8606376791106, Width: 10.5, Height: 8
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Text: 'A', X: 257.7947891478428, Y: 568.9591046463099, Width: 10.5, Height: 8
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Text: 'U', X: 266.306280993412, Y: 587.0575716135095, Width: 10.5, Height: 8
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Text: 'G', X: 277.0275099046344, Y: 600.8888857460555, Width: 10.5, Height: 8
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Text: 'C', X: 273.21187541239084, Y: 617.9678474657152, Width: 10.5, Height: 8
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Text: 'C', X: 273.21187541239084, Y: 637.9678474657152, Width: 10.5, Height: 8
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Text: 'U', X: 273.21187541239084, Y: 657.9678474657152, Width: 10.5, Height: 8
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Text: 'G', X: 273.21187541239084, Y: 677.9678474657152, Width: 10.5, Height: 8
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Text: 'A', X: 273.21187541239084, Y: 697.9678474657152, Width: 10.5, Height: 8
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Text: '1', X: 223.96187541239084, Y: 717.9678474657152, Width: 9.0, Height: 8
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Text: '20', X: 116.12896907255706, Y: 419.0125751101621, Width: 18.0, Height: 8
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Text: '30', X: 161.15547798779104, Y: 260.5787821761059, Width: 18.0, Height: 8
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Text: '40', X: 33.498372253081264, Y: 135.23219212038146, Width: 18.0, Height: 8
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Text: '50', X: 43.40906342570936, Y: 8.231371989078184, Width: 18.0, Height: 8
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Text: '60', X: 150.9086225600219, Y: 153.14477944556847, Width: 18.0, Height: 8
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Text: '70', X: 298.3041063236159, Y: 243.84408671027848, Width: 18.0, Height: 8
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Text: '80', X: 351.5477820312277, Y: 404.52275365140287, Width: 18.0, Height: 8
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Text: '90', X: 364.0389667177401, Y: 564.7452988529246, Width: 18.0, Height: 8
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Text: '100', X: 257.77647816213545, Y: 399.2771947648533, Width: 27.0, Height: 8
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Text: '110', X: 198.3813201684371, Y: 413.17211489718346, Width: 27.0, Height: 8
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Text: '120', X: 267.6432561150422, Y: 560.4476128007408, Width: 27.0, Height: 8
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Text: '127', X: 264.96187541239084, Y: 717.9678474657152, Width: 27.0, Height: 8
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Text: 'ATP13A3, -30.5 ± 1.5
 kcal/mol, AUC: 0.691', X: 143.8952598925482, Y: 730.7678474657151, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.23137198907818401, 425.5405197850964, 730.7678474657151)
Updated viewBox: -0.25 -4.768628010921816 430.7905197850964 740.536475476637
Updated SVG: /disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/final_image/ATP13A3_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/final_image/ATP13A3_fold_final_1.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AUCAGGGUCAAGAAGAUGAAAUGGAGAUUUAUGGUUACAAUUUGAGUCGCUGGAAGCUUGCCAUAGUUUCUUUAGGAGUGAUUUGCUCUGGUGGGUUUCUCCUCCUCCUCCUCUAUUGGAUGCCUGA', '-structureDBN', '.(((((.(((......)))....((((.(((((((.....(((.((...)).)))....)))))))..)))).(((((.((...((((....))))...)))))))..(((......)))..)))))', '-o', '/disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/final_image/ATP13A3_fold_2.svg', '-title', 'ATP13A3, -30.7 ± 1.4\n kcal/mol, AUC: 0.677', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,5,6,7,8,12,15,17,18,22,23,24,26,28,29,30,32,33,34,35,36,41,42,43,44,46,47,49,51,52,53,56,58,59,60,64,66,67,68,69,71,72,73,75,76,78,79,80,82,83,84,85,87,89,90,91,92,93,94,95,96,97,98,100,103,106,109,112,114,116,117,118,119,121,122,125,126', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '99,101,102,104,105,74,108,77,110,111,19,120,61', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '4,37,48,81,50,21,54,86,88,25,124,63,62,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '1,65,3,70,9,10,11,13,14,16,20,27,38,39,40,107,45,113,115,55,57,123,127']Output file: /disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/final_image/ATP13A3_fold_2.svg


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Text: 'C', X: 212.70484764056283, Y: 467.35783893020226, Width: 10.5, Height: 8
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Text: 'G', X: 147.91395739132435, Y: 463.43384650324873, Width: 10.5, Height: 8
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Text: 'U', X: 178.2925475504718, Y: 450.864094585466, Width: 10.5, Height: 8
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Text: 'A', X: 211.92118804505031, Y: 429.2050424712484, Width: 10.5, Height: 8
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Text: 'U', X: 214.80128397083246, Y: 377.9445959304925, Width: 10.5, Height: 8
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Text: 'G', X: 237.19351371607235, Y: 351.4245908663268, Width: 10.5, Height: 8
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Text: 'A', X: 229.95584605417685, Y: 332.7801234076957, Width: 10.5, Height: 8
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Text: 'G', X: 222.71817839228135, Y: 314.1356559490647, Width: 10.5, Height: 8
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Text: 'A', X: 215.48051073038584, Y: 295.4911884904336, Width: 10.5, Height: 8
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Text: 'U', X: 184.07488918131247, Y: 254.874952366785, Width: 10.5, Height: 8
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Text: 'U', X: 155.79061793385057, Y: 226.5906811193231, Width: 10.5, Height: 8
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Text: 'G', X: 141.64848231011962, Y: 212.44854549559216, Width: 10.5, Height: 8
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Text: 'G', X: 127.50634668638867, Y: 198.3064098718612, Width: 10.5, Height: 8
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Text: 'U', X: 113.36421106265772, Y: 184.16427424813025, Width: 10.5, Height: 8
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Text: 'U', X: 96.11830693470733, Y: 187.1353927956477, Width: 10.5, Height: 8
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Text: 'A', X: 79.18108108075307, Y: 182.73321890244438, Width: 10.5, Height: 8
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Text: 'C', X: 65.5645084507832, Y: 171.74059844931253, Width: 10.5, Height: 8
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Text: 'A', X: 57.690046727407946, Y: 156.11236735360114, Width: 10.5, Height: 8
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Text: 'A', X: 56.958024492176776, Y: 138.62771985755512, Width: 10.5, Height: 8
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Text: 'U', X: 41.813902632982035, Y: 88.78388230023666, Width: 10.5, Height: 8
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Text: 'G', X: 27.433020038094526, Y: 78.81204113868148, Width: 10.5, Height: 8
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Text: 'A', X: 24.27579031836285, Y: 61.59927550221073, Width: 10.5, Height: 8
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Text: 'G', X: 13.433373498378273, Y: 44.79326474707568, Width: 10.5, Height: 8
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Text: 'U', X: 4.75, Y: 29.59952206858884, Width: 10.5, Height: 8
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Text: 'C', X: 13.019231584137344, Y: 14.176467867156703, Width: 10.5, Height: 8
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Text: 'G', X: 30.479664432436323, Y: 13.0, Width: 10.5, Height: 8
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Text: 'C', X: 40.743140975472784, Y: 27.174337414600814, Width: 10.5, Height: 8
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Text: 'U', X: 51.585557795457305, Y: 43.98034816973586, Width: 10.5, Height: 8
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Text: 'G', X: 65.966518901906, Y: 53.95220645467009, Width: 10.5, Height: 8
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Text: 'G', X: 69.12373185903266, Y: 71.16505068051924, Width: 10.5, Height: 8
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Text: 'A', X: 79.9660897788587, Y: 87.97109943501198, Width: 10.5, Height: 8
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Text: 'A', X: 90.80844769868474, Y: 104.77714818950471, Width: 10.5, Height: 8
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Text: 'G', X: 108.2931336354074, Y: 105.50910289723845, Width: 10.5, Height: 8
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Text: 'C', X: 123.92142068289047, Y: 113.3835326519237, Width: 10.5, Height: 8
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Text: 'U', X: 134.91409334702684, Y: 127.0001088625263, Width: 10.5, Height: 8
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Text: 'U', X: 139.31629847615687, Y: 143.9373633626235, Width: 10.5, Height: 8
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Text: 'G', X: 136.34518145122053, Y: 161.18330385956745, Width: 10.5, Height: 8
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Text: 'C', X: 150.48731707495148, Y: 175.3254394832984, Width: 10.5, Height: 8
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Text: 'C', X: 164.62945269868243, Y: 189.46757510702935, Width: 10.5, Height: 8
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Text: 'A', X: 178.77158832241338, Y: 203.6097107307603, Width: 10.5, Height: 8
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Text: 'U', X: 192.91372394614433, Y: 217.75184635449125, Width: 10.5, Height: 8
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Text: 'A', X: 207.05585956987528, Y: 231.8939819782222, Width: 10.5, Height: 8
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Text: 'G', X: 221.19799519360623, Y: 246.03611760195315, Width: 10.5, Height: 8
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Text: 'U', X: 238.5569908373643, Y: 250.82815435079783, Width: 10.5, Height: 8
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Text: 'A', X: 390.2137049401005, Y: 248.82074668326152, Width: 10.5, Height: 8
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Text: 'U', X: 407.4907609240014, Y: 219.80033902112814, Width: 10.5, Height: 8
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Text: 'U', X: 424.49991328023054, Y: 215.68463386496603, Width: 10.5, Height: 8
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Text: 'G', X: 441.25143027523063, Y: 220.74793033822277, Width: 10.5, Height: 8
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Text: 'C', X: 493.8234930479025, Y: 191.83118405123105, Width: 10.5, Height: 8
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Text: 'U', X: 507.12816626205756, Y: 180.46294222317647, Width: 10.5, Height: 8
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Text: 'G', X: 524.3441366635827, Y: 183.60326302373153, Width: 10.5, Height: 8
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Text: 'C', X: 388.35294140439623, Y: 286.93619708154745, Width: 10.5, Height: 8
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Text: 'C', X: 375.22727220394853, Y: 298.51060022125273, Width: 10.5, Height: 8
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Text: 'U', X: 363.47157522616106, Y: 314.6909459705388, Width: 10.5, Height: 8
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Text: 'C', X: 351.7158782483736, Y: 330.87129171982485, Width: 10.5, Height: 8
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Text: 'C', X: 339.96018127058613, Y: 347.0516374691109, Width: 10.5, Height: 8
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Text: 'U', X: 328.20448429279867, Y: 363.2319832183969, Width: 10.5, Height: 8
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Text: 'C', X: 337.68031042256536, Y: 377.944519340984, Width: 10.5, Height: 8
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Text: 'C', X: 343.08811404837826, Y: 394.58800635376616, Width: 10.5, Height: 8
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Text: 'U', X: 344.06983449885104, Y: 412.0604482253857, Width: 10.5, Height: 8
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Text: 'C', X: 363.09096636561594, Y: 418.24078337059746, Width: 10.5, Height: 8
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Text: 'C', X: 382.11209823238084, Y: 424.4211185158092, Width: 10.5, Height: 8
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Text: 'U', X: 399.20599595505166, Y: 420.67307736529574, Width: 10.5, Height: 8
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Text: 'C', X: 414.69250757607426, Y: 428.8227466611019, Width: 10.5, Height: 8
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Text: 'U', X: 421.28275264086324, Y: 445.03440363394395, Width: 10.5, Height: 8
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Text: 'A', X: 415.8749668774401, Y: 461.67787096968834, Width: 10.5, Height: 8
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Text: 'U', X: 401.01437834737123, Y: 470.9197355196078, Width: 10.5, Height: 8
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Text: 'U', X: 383.69527058791334, Y: 468.4102219740457, Width: 10.5, Height: 8
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Text: 'G', X: 372.06905362141174, Y: 455.3304577993023, Width: 10.5, Height: 8
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Text: 'G', X: 353.04792175464684, Y: 449.15012265409047, Width: 10.5, Height: 8
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Text: 'A', X: 334.0267898878819, Y: 442.9697875088787, Width: 10.5, Height: 8
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Text: 'U', X: 322.9625244667539, Y: 456.5282546306013, Width: 10.5, Height: 8
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Text: 'G', X: 308.80472834745876, Y: 466.81449831060775, Width: 10.5, Height: 8
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Text: 'C', X: 292.4908153738773, Y: 473.1474473464368, Width: 10.5, Height: 8
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Text: 'C', X: 292.4908153738773, Y: 493.1474473464368, Width: 10.5, Height: 8
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/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/final_image/ATP13A3_fold_3.svg

Text: 'U', X: 292.4908153738773, Y: 513.1474473464368, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 292.4908153738773, Y: 533.1474473464368, Width: 10.5, Height: 8
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Text: 'A', X: 292.4908153738773, Y: 553.1474473464368, Width: 10.5, Height: 8
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Text: '1', X: 243.2408153738773, Y: 573.1474473464368, Width: 9.0, Height: 8
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Text: '10', X: 204.4364577807191, Y: 493.9610803361783, Width: 18.0, Height: 8
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Text: '20', X: 184.71490755248306, Y: 413.51703030062623, Width: 18.0, Height: 8
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Text: '30', X: 166.18275355758152, Y: 269.01708799051596, Width: 18.0, Height: 8
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Text: '40', X: 33.498372253081264, Y: 135.23219212038123, Width: 18.0, Height: 8
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Text: '50', X: 43.40906342570936, Y: 8.23137198907807, Width: 18.0, Height: 8
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Text: '60', X: 150.90862256002106, Y: 153.1447794455662, Width: 18.0, Height: 8
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Text: '70', X: 267.90990547118787, Y: 295.136778336589, Width: 18.0, Height: 8
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Text: '80', X: 357.4368853311812, Y: 242.09857385367832, Width: 18.0, Height: 8
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Text: '90', X: 532.2826656270996, Y: 167.3743292735116, Width: 18.0, Height: 8
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Text: '100', X: 408.3708609793052, Y: 294.1664318006152, Width: 27.0, Height: 8
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Text: '110', X: 361.0213015108277, Y: 399.21965150383255, Width: 27.0, Height: 8
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Text: '120', X: 330.17236714649823, Y: 462.48078185984747, Width: 27.0, Height: 8
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Text: '127', X: 284.2408153738773, Y: 573.1474473464368, Width: 27.0, Height: 8
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Text: 'ATP13A3, -30.7 ± 1.4
 kcal/mol, AUC: 0.677', X: 202.76410244913575, Y: 585.9474473464368, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.23137198907807033, 550.2826656270996, 585.9474473464368)
Updated viewBox: -0.25 -4.76862801092193 555.5326656270996 595.7160753573587
Updated SVG: /disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/final_image/ATP13A3_fold_final_2.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/final_image/ATP13A3_fold_final_2.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AUCAGGGUCAAGAAGAUGAAAUGGAGAUUUAUGGUUACAAUUUGAGUCGCUGGAAGCUUGCCAUAGUUUCUUUAGGAGUGAUUUGCUCUGGUGGGUUUCUCCUCCUCCUCCUCUAUUGGAUGCCUGA', '-structureDBN', '.(((((.(((......)))...(((((.(((((((.....(((.((...)).)))....)))))))..))))).(((((.....)))))((.(((....))).))...(((......)))..)))))', '-o', '/disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/final_image/ATP13A3_fold_3.svg', '-title', 'ATP13A3, -29.6 ± 1.4\n kcal/mol, AUC: 0.635', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,5,6,7,8,12,15,17,18,22,23,24,26,28,29,30,32,33,34,35,36,41,42,43,44,46,47,49,51,52,53,56,58,59,60,64,66,67,68,69,71,72,73,75,76,78,79,80,82,83,84,85,87,89,90,91,92,93,94,95,96,97,98,100,103,106,109,112,114,116,117,118,119,121,122,125,126', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '99,101,102,104,105,74,108,77,110,111,19,120,61', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '4,37,48,81,50,21,54,86,88,25,124,63,62,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '1,65,3,70,9,10,11,13,14,16,20,27,38,39,40,107,45,113,115,55,57,123,127']
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Text: 'A', X: 281.95751061593666, Y: 377.9152276090257, Width: 10.5, Height: 8
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Text: 'U', X: 299.4436689554428, Y: 377.2199446847476, Width: 10.5, Height: 8
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Text: 'G', X: 316.28442718165695, Y: 366.43157769218567, Width: 10.5, Height: 8
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Text: 'A', X: 333.12518540787113, Y: 355.64321069962364, Width: 10.5, Height: 8
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Text: 'A', X: 328.9889704143201, Y: 338.6390428126872, Width: 10.5, Height: 8
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Text: 'A', X: 328.8550324518741, Y: 321.13955537384436, Width: 10.5, Height: 8
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Text: 'U', X: 332.7304843645361, Y: 304.0740676142565, Width: 10.5, Height: 8
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Text: 'G', X: 340.4095182962495, Y: 288.3488509901334, Width: 10.5, Height: 8
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Text: 'G', X: 326.2673826725185, Y: 274.2067153664025, Width: 10.5, Height: 8
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Text: 'A', X: 312.12524704878757, Y: 260.0645797426715, Width: 10.5, Height: 8
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Text: 'G', X: 297.9831114250566, Y: 245.92244411894058, Width: 10.5, Height: 8
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Text: 'U', X: 238.75692297133185, Y: 204.54353902627372, Width: 10.5, Height: 8
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Text: 'U', X: 202.46953173022916, Y: 187.71424204407197, Width: 10.5, Height: 8
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Text: 'G', X: 184.32583610967782, Y: 179.29959355297115, Width: 10.5, Height: 8
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Text: 'G', X: 166.18214048912648, Y: 170.8849450618702, Width: 10.5, Height: 8
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Text: 'U', X: 148.03844486857514, Y: 162.4702965707694, Width: 10.5, Height: 8
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Text: 'U', X: 131.94978858159106, Y: 171.47368279257353, Width: 10.5, Height: 8
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Text: 'A', X: 113.5488889260804, Y: 172.61942117785816, Width: 10.5, Height: 8
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Text: 'C', X: 96.46763358356884, Y: 165.68137098319937, Width: 10.5, Height: 8
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Text: 'A', X: 84.07744471410717, Y: 152.0289336784997, Width: 10.5, Height: 8
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Text: 'A', X: 78.82384265470228, Y: 134.35676657932652, Width: 10.5, Height: 8
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Text: 'U', X: 81.74375999889048, Y: 116.15292337843084, Width: 10.5, Height: 8
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Text: 'U', X: 67.60162437515942, Y: 102.01078775469989, Width: 10.5, Height: 8
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Text: 'U', X: 53.45948875142858, Y: 87.86865213096894, Width: 10.5, Height: 8
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Text: 'G', X: 37.29933148124758, Y: 81.15314640306678, Width: 10.5, Height: 8
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Text: 'A', X: 30.58382575334531, Y: 64.99298913288578, Width: 10.5, Height: 8
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Text: 'G', X: 16.44169012961447, Y: 50.85085350915483, Width: 10.5, Height: 8
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Text: 'U', X: 4.75, Y: 37.82951817803428, Width: 10.5, Height: 8
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Text: 'C', X: 9.581463284422398, Y: 21.00965627540006, Width: 10.5, Height: 8
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Text: 'G', X: 26.401325187056727, Y: 16.178192990977664, Width: 10.5, Height: 8
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Text: 'C', X: 39.42266051817728, Y: 27.86988312059202, Width: 10.5, Height: 8
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Text: 'U', X: 53.56479614190812, Y: 42.01201874432297, Width: 10.5, Height: 8
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Text: 'G', X: 69.72495341208912, Y: 48.72752447222524, Width: 10.5, Height: 8
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Text: 'G', X: 76.44045913999139, Y: 64.88768174240613, Width: 10.5, Height: 8
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Text: 'A', X: 90.58259476372223, Y: 79.02981736613708, Width: 10.5, Height: 8
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Text: 'A', X: 104.72473038745329, Y: 93.17195298986803, Width: 10.5, Height: 8
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Text: 'G', X: 120.81996471881371, Y: 90.16864171195584, Width: 10.5, Height: 8
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Text: 'C', X: 136.82411592621224, Y: 93.62459179032305, Width: 10.5, Height: 8
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Text: 'U', X: 150.24588388329448, Y: 103.00182974825509, Width: 10.5, Height: 8
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Text: 'U', X: 158.99595739985386, Y: 116.84063967787858, Width: 10.5, Height: 8
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Text: 'G', X: 161.71224866661407, Y: 132.98679118737346, Width: 10.5, Height: 8
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Text: 'C', X: 179.8559442871654, Y: 141.40143967847428, Width: 10.5, Height: 8
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Text: 'C', X: 197.99963990771676, Y: 149.8160881695752, Width: 10.5, Height: 8
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Text: 'A', X: 216.1433355282681, Y: 158.23073666067603, Width: 10.5, Height: 8
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Text: 'U', X: 234.28703114881944, Y: 166.64538515177696, Width: 10.5, Height: 8
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Text: 'A', X: 252.43072676937078, Y: 175.06003364287778, Width: 10.5, Height: 8
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Text: 'G', X: 270.5744223899221, Y: 183.47468213397872, Width: 10.5, Height: 8
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Text: 'U', X: 287.99967360404565, Y: 181.85894077946477, Width: 10.5, Height: 8
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Text: 'U', X: 302.3452646339698, Y: 191.88161597135638, Width: 10.5, Height: 8
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Text: 'U', X: 306.8219461898884, Y: 208.79933810664681, Width: 10.5, Height: 8
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Text: 'G', X: 388.10359678182346, Y: 235.1313760593962, Width: 10.5, Height: 8
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Text: 'G', X: 381.4554271770055, Y: 158.94333575974167, Width: 10.5, Height: 8
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Text: 'U', X: 420.5255471306019, Y: 142.78756953348818, Width: 10.5, Height: 8
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Text: 'G', X: 482.33450350064874, Y: 228.3500819797565, Width: 10.5, Height: 8
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Text: 'G', X: 496.47663912437974, Y: 214.20794635602556, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font./disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/final_image/ATP13A3_fold_5.svg


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Text: 'U', X: 520.2267368281457, Y: 185.43918035256615, Width: 10.5, Height: 8
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Text: 'U', X: 537.635637512514, Y: 183.65552439964563, Width: 10.5, Height: 8
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Text: 'U', X: 550.0100314693224, Y: 196.0299183564539, Width: 10.5, Height: 8
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Text: 'C', X: 548.226375516402, Y: 213.43881904082218, Width: 10.5, Height: 8
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Text: 'U', X: 533.5997451366734, Y: 223.04678112085742, Width: 10.5, Height: 8
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Text: 'C', X: 519.4576095129426, Y: 237.18891674458825, Width: 10.5, Height: 8
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Text: 'C', X: 505.3154738892115, Y: 251.3310523683192, Width: 10.5, Height: 8
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Text: 'U', X: 498.59996816130933, Y: 267.4912096385002, Width: 10.5, Height: 8
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Text: 'C', X: 482.43981089112845, Y: 274.20671536640236, Width: 10.5, Height: 8
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Text: 'C', X: 468.2976752673975, Y: 288.3488509901334, Width: 10.5, Height: 8
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Text: 'U', X: 475.16598187173526, Y: 301.88154683696655, Width: 10.5, Height: 8
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Text: 'C', X: 479.206279470577, Y: 316.50972128926503, Width: 10.5, Height: 8
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Text: 'C', X: 480.2572121375562, Y: 331.64917415334037, Width: 10.5, Height: 8
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Text: 'U', X: 478.27680914901185, Y: 346.69528649165056, Width: 10.5, Height: 8
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Text: 'C', X: 496.31512718625527, Y: 355.3335202455646, Width: 10.5, Height: 8
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Text: 'C', X: 514.3534452234985, Y: 363.97175399947866, Width: 10.5, Height: 8
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Text: 'U', X: 531.7926040349022, Y: 362.5140531489209, Width: 10.5, Height: 8
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Text: 'C', X: 546.0671807482786, Y: 372.63757089094145, Width: 10.5, Height: 8
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Text: 'U', X: 550.4587041062034, Y: 389.57757308739565, Width: 10.5, Height: 8
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Text: 'A', X: 542.9002600383717, Y: 405.3610795131723, Width: 10.5, Height: 8
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Text: 'U', X: 526.9493052904529, Y: 412.5594261600711, Width: 10.5, Height: 8
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Text: 'U', X: 510.11331508599915, Y: 407.78463970886594, Width: 10.5, Height: 8
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Text: 'G', X: 500.3163153733882, Y: 393.2840208099992, Width: 10.5, Height: 8
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Text: 'G', X: 482.27799733614484, Y: 384.64578705608506, Width: 10.5, Height: 8
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Text: 'A', X: 464.2396792989015, Y: 376.007553302171, Width: 10.5, Height: 8
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Text: 'U', X: 451.9603815051108, Y: 388.4762679789694, Width: 10.5, Height: 8
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Text: 'G', X: 437.15290105844446, Y: 397.80303177042435, Width: 10.5, Height: 8
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Text: 'C', X: 420.6035967818235, Y: 403.492542114893, Width: 10.5, Height: 8
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Text: 'C', X: 420.6035967818235, Y: 423.492542114893, Width: 10.5, Height: 8
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Text: 'U', X: 420.6035967818235, Y: 443.492542114893, Width: 10.5, Height: 8
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Text: 'G', X: 420.6035967818235, Y: 463.492542114893, Width: 10.5, Height: 8
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Text: 'A', X: 420.6035967818235, Y: 483.492542114893, Width: 10.5, Height: 8
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Text: '1', X: 371.3535967818235, Y: 503.492542114893, Width: 9.0, Height: 8
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Text: '10', X: 325.4820775027801, Y: 420.38991996697484, Width: 18.0, Height: 8
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Text: '20', X: 305.39039711629727, Y: 341.09549106840427, Width: 18.0, Height: 8
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Text: '30', X: 226.5922744802309, Y: 222.687234646825, Width: 18.0, Height: 8
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Text: '40', X: 55.11602206651618, Y: 135.65499512999673, Width: 18.0, Height: 8
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Text: '50', X: 37.95032264720661, Y: 8.000000000000057, Width: 18.0, Height: 8
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Text: '60', X: 172.58382113653593, Y: 119.34092666705726, Width: 18.0, Height: 8
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Text: '70', X: 331.35621743735027, Y: 208.79933810664676, Width: 18.0, Height: 8
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Text: '80', X: 357.70548540847847, Y: 158.8950733983454, Width: 18.0, Height: 8
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Text: '90', X: 452.3550454142685, Y: 248.52710542667091, Width: 18.0, Height: 8
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Text: '100', X: 541.0803788828504, Y: 235.39777953975613, Width: 27.0, Height: 8
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Text: '110', X: 496.70336094016943, Y: 337.29520220832126, Width: 27.0, Height: 8
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Text: '120', X: 458.29415821472486, Y: 395.8743441080995, Width: 27.0, Height: 8
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Text: '127', X: 412.3535967818235, Y: 503.492542114893, Width: 27.0, Height: 8
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Text: 'ATP13A3, -29.6 ± 1.4
 kcal/mol, AUC: 0.635', X: 211.6043520531017, Y: 516.292542114893, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 5.684341886080802e-14, 568.0803788828504, 516.292542114893)
Updated viewBox: -0.25 -4.999999999999943 573.3303788828504 526.292542114893
Updated SVG: /disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/final_image/ATP13A3_fold_final_3.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/final_image/ATP13A3_fold_final_3.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AUCAGGGUCAAGAAGAUGAAAUGGAGAUUUAUGGUUACAAUUUGAGUCGCUGGAAGCUUGCCAUAGUUUCUUUAGGAGUGAUUUGCUCUGGUGGGUUUCUCCUCCUCCUCCUCUAUUGGAUGCCUGA', '-structureDBN', '.((((((((....(((.((...((((......(((.((.......)).))).((((((......))))))...(((((.(((((((....))))))).))))).)))))).)))....))).)))))', '-o', '/disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/final_image/ATP13A3_fold_5.svg', '-title', 'ATP13A3, -28.6 ± 1.4\n kcal/mol, AUC: 0.577', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,5,6,7,8,12,15,17,18,22,23,24,26,28,29,30,32,33,34,35,36,41,42,43,44,46,47,49,51,52,53,56,58,59,60,64,66,67,68,69,71,72,73,75,76,78,79,80,82,83,84,85,87,89,90,91,92,93,94,95,96,97,98,100,103,106,109,112,114,116,117,118,119,121,122,125,126', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '99,101,102,104,105,74,108,77,110,111,19,120,61', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '4,37,48,81,50,21,54,86,88,25,124,63,62,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '1,65,3,70,9,10,11,13,14,16,20,27,38,39,40,107,45,113,115,55,57,123,127']
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Text: 'U', X: 120.58290633983384, Y: 637.083182384438, Width: 10.5, Height: 8
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Text: 'C', X: 120.58290633983384, Y: 617.083182384438, Width: 10.5, Height: 8
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Text: 'A', X: 120.58290633983384, Y: 597.083182384438, Width: 10.5, Height: 8
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Text: 'G', X: 120.58290633983384, Y: 577.083182384438, Width: 10.5, Height: 8
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Text: 'G', X: 120.58290633983384, Y: 557.083182384438, Width: 10.5, Height: 8
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Text: 'G', X: 116.7673030991559, Y: 540.0040807812823, Width: 10.5, Height: 8
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Text: 'U', X: 108.2558112535867, Y: 521.9056138140827, Width: 10.5, Height: 8
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Text: 'C', X: 99.74431940801753, Y: 503.8071468468833, Width: 10.5, Height: 8
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Text: 'A', X: 82.66828864804262, Y: 499.97840163861287, Width: 10.5, Height: 8
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Text: 'G', X: 61.568038560340455, Y: 473.19445248547095, Width: 10.5, Height: 8
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Text: 'A', X: 61.84309979878978, Y: 455.69661096999926, Width: 10.5, Height: 8
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Text: 'A', X: 69.78473222184385, Y: 440.1023623237015, Width: 10.5, Height: 8
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Text: 'G', X: 61.273244359925854, Y: 422.00389348303923, Width: 10.5, Height: 8
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Text: 'A', X: 52.76175649800791, Y: 403.905424642377, Width: 10.5, Height: 8
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Text: 'U', X: 39.83445945866339, Y: 392.109985200975, Width: 10.5, Height: 8
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Text: 'G', X: 38.99394123621667, Y: 374.63025609904213, Width: 10.5, Height: 8
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Text: 'A', X: 30.482389944576084, Y: 356.5318170887361, Width: 10.5, Height: 8
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Text: 'A', X: 16.08349187860628, Y: 346.58594126045097, Width: 10.5, Height: 8
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Text: 'A', X: 11.516481790728875, Y: 329.69241793454063, Width: 10.5, Height: 8
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Text: 'U', X: 18.94275125248504, Y: 313.8463069483319, Width: 10.5, Height: 8
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Text: 'U', X: 55.2869499193242, Y: 224.92525228879623, Width: 10.5, Height: 8
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Text: 'U', X: 61.0737439774048, Y: 189.89649250239887, Width: 10.5, Height: 8
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Text: 'A', X: 71.10126116026478, Y: 175.02623319360288, Width: 10.5, Height: 8
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Text: 'U', X: 84.92095303035182, Y: 163.5941804741986, Width: 10.5, Height: 8
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Text: 'G', X: 101.40714697334974, Y: 156.53152360604713, Width: 10.5, Height: 8
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Text: 'G', X: 101.40714697334971, Y: 136.53152360604713, Width: 10.5, Height: 8
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Text: 'U', X: 101.40714697334971, Y: 116.53152360604713, Width: 10.5, Height: 8
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Text: 'U', X: 94.72876982186045, Y: 100.3559871759644, Width: 10.5, Height: 8
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Text: 'A', X: 101.40714697334971, Y: 84.18045074588167, Width: 10.5, Height: 8
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Text: 'C', X: 101.40714697334971, Y: 64.18045074588167, Width: 10.5, Height: 8
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Text: 'A', X: 90.9550703169053, Y: 50.14462921679751, Width: 10.5, Height: 8
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Text: 'A', X: 90.8080266965529, Y: 32.645241496017206, Width: 10.5, Height: 8
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Text: 'U', X: 101.02276410927314, Y: 18.435761138957787, Width: 10.5, Height: 8
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Text: 'U', X: 117.65714697334968, Y: 13.0, Width: 10.5, Height: 8
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Text: 'U', X: 134.29152983742625, Y: 18.435761138957787, Width: 10.5, Height: 8
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Text: 'G', X: 144.50626725014652, Y: 32.645241496017206, Width: 10.5, Height: 8
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Text: 'G', X: 133.9071469733497, Y: 64.18045074588167, Width: 10.5, Height: 8
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Text: 'U', X: 133.9071469733497, Y: 84.18045074588167, Width: 10.5, Height: 8
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Text: 'C', X: 140.58552412483897, Y: 100.3559871759644, Width: 10.5, Height: 8
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Text: 'G', X: 133.9071469733497, Y: 116.53152360604713, Width: 10.5, Height: 8
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Text: 'C', X: 133.90714697334974, Y: 136.53152360604713, Width: 10.5, Height: 8
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Text: 'U', X: 133.9071469733497, Y: 156.53152360604713, Width: 10.5, Height: 8
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Text: 'G', X: 148.68843980353765, Y: 162.59022219606157, Width: 10.5, Height: 8
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Text: 'G', X: 161.46449171985174, Y: 172.1801619126632, Width: 10.5, Height: 8
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Text: 'A', X: 178.64025381440453, Y: 161.93354313028811, Width: 10.5, Height: 8
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Text: 'A', X: 195.81601590895733, Y: 151.68692434791296, Width: 10.5, Height: 8
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Text: 'G', X: 212.99177800351012, Y: 141.44030556553776, Width: 10.5, Height: 8
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Text: 'C', X: 230.16754009806291, Y: 131.19368678316255, Width: 10.5, Height: 8
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Text: 'U', X: 247.3433021926157, Y: 120.94706800078757, Width: 10.5, Height: 8
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Text: 'U', X: 255.77765177194328, Y: 105.61374158435797, Width: 10.5, Height: 8
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Text: 'G', X: 272.10827930875803, Y: 99.32408689805789, Width: 10.5, Height: 8
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Text: 'C', X: 288.64901281177583, Y: 105.03839236777299, Width: 10.5, Height: 8
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Text: 'C', X: 90.68325622600207, Y: 408.17272570742256, Width: 10.5, Height: 8
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Text: 'U', X: 99.19474408792004, Y: 426.2711945480848, Width: 10.5, Height: 8
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Text: 'A', X: 116.27077092896252, Y: 430.09994203571006, Width: 10.5, Height: 8
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Text: 'U', X: 129.92346242134604, Y: 441.04772788554277, Width: 10.5, Height: 8
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Text: 'U', X: 137.37101604337172, Y: 456.8838873014824, Width: 10.5, Height: 8
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Text: 'G', X: 137.09595639776742, Y: 474.38172551628367, Width: 10.5, Height: 8
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Text: 'G', X: 129.1543282297166, Y: 489.9759725978334, Width: 10.5, Height: 8
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Text: 'A', X: 137.66582007528578, Y: 508.07443956503283, Width: 10.5, Height: 8
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Text: 'U', X: 146.17731192085498, Y: 526.1729065322322, Width: 10.5, Height: 8
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Text: 'G', X: 156.89854083207743, Y: 540.0042206647784, Width: 10.5, Height: 8
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Text: 'C', X: 153.08290633983384, Y: 557.083182384438, Width: 10.5, Height: 8
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Text: 'C', X: 153.08290633983384, Y: 577.083182384438, Width: 10.5, Height: 8
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Text: 'U', X: 153.08290633983384, Y: 597.083182384438, Width: 10.5, Height: 8
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Text: 'G', X: 153.08290633983384, Y: 617.083182384438, Width: 10.5, Height: 8
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Text: 'A', X: 153.08290633983384, Y: 637.083182384438, Width: 10.5, Height: 8/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/final_image/ATP13A3_fold_4.svg


Warning: Font Verdana not found. Using default font.
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Text: '10', X: 70.2509201278215, Y: 518.0027386010279, Width: 18.0, Height: 8
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Text: '20', X: -4.0, Y: 358.1279100288848, Width: 18.0, Height: 8
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Text: '30', X: 39.31568961904898, Y: 181.19534440421654, Width: 18.0, Height: 8
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Text: '40', X: 67.9957817446719, Y: 26.592901667943465, Width: 18.0, Height: 8
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Text: '50', X: 150.15714697334974, Y: 136.53152360604713, Width: 18.0, Height: 8
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Text: '60', X: 268.0082718326279, Y: 79.32714976342015, Width: 18.0, Height: 8
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Text: '70', X: 191.74176405444308, Y: 209.99313177522953, Width: 18.0, Height: 8
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Text: '80', X: 224.33240459197808, Y: 355.32594656239405, Width: 18.0, Height: 8
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Text: '90', X: 220.9827558606015, Y: 515.9997575556681, Width: 18.0, Height: 8
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Text: '100', X: 131.5117503727241, Y: 341.3136797649368, Width: 27.0, Height: 8
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Text: '110', X: 78.25235109588053, Y: 352.2874498159072, Width: 27.0, Height: 8
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Text: '120', X: 147.51428704248522, Y: 499.56294771946364, Width: 27.0, Height: 8
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Text: '127', X: 144.83290633983384, Y: 657.083182384438, Width: 27.0, Height: 8
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Text: 'ATP13A3, -28.6 ± 1.4
 kcal/mol, AUC: 0.577', X: 88.56563681068963, Y: 669.883182384438, Width: 142.5, Height: 23
Calculated bounding box: (-4.0, 5.0, 308.11479183065035, 669.883182384438)
Updated viewBox: -9.0 0.0 322.11479183065035 674.883182384438
Updated SVG: /disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/final_image/ATP13A3_fold_final_5.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/final_image/ATP13A3_fold_final_5.svg
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'AUCAGGGUCAAGAAGAUGAAAUGGAGAUUUAUGGUUACAAUUUGAGUCGCUGGAAGCUUGCCAUAGUUUCUUUAGGAGUGAUUUGCUCUGGUGGGUUUCUCCUCCUCCUCCUCUAUUGGAUGCCUGA', '-structureDBN', '.((((((((....(((.((...((((......(((.((.......)).)))((((((((((((.(((....(((....)))...))).)))))))))))).))))...)).)))....))).)))))', '-o', '/disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/final_image/ATP13A3_fold_4.svg', '-title', 'ATP13A3, -28.9 ± 1.5\n kcal/mol, AUC: 0.61', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '2,5,6,7,8,12,15,17,18,22,23,24,26,28,29,30,32,33,34,35,36,41,42,43,44,46,47,49,51,52,53,56,58,59,60,64,66,67,68,69,71,72,73,75,76,78,79,80,82,83,84,85,87,89,90,91,92,93,94,95,96,97,98,100,103,106,109,112,114,116,117,118,119,121,122,125,126', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '99,101,102,104,105,74,108,77,110,111,19,120,61', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '4,37,48,81,50,21,54,86,88,25,124,63,62,31', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '1,65,3,70,9,10,11,13,14,16,20,27,38,39,40,107,45,113,115,55,57,123,127']
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Text: 'C', X: 47.424245489256094, Y: 82.59541752612074, Width: 10.5, Height: 8
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Text: 'A', X: 430.59492916092705, Y: 74.05732140416956, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 421.757549073714, Y: 89.16198006281286, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 406.8485494775035, Y: 98.32558912475986, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 389.38088664911413, Y: 99.38895891636787, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 373.47040587906, Y: 92.10153127242245, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 355.27890788008267, Y: 100.41233150785126, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 337.08740988110526, Y: 108.72313174327985, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 325.14964432578876, Y: 121.51921526701096, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 307.6616106623743, Y: 122.16626904165616, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 289.47008353661437, Y: 130.47700552121944, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 271.2785564108545, Y: 138.7877420007825, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 253.08702928509456, Y: 147.09847848034576, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 234.89550215933465, Y: 155.4092149599088, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 216.70397503357475, Y: 163.71995143947208, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 198.51244790781487, Y: 172.0306879190352, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 180.32092078205497, Y: 180.34142439859846, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 162.1293936562951, Y: 188.6521608781615, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 143.93786653053516, Y: 196.96289735772478, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 125.74633940477528, Y: 205.27363383728783, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 107.55481227901535, Y: 213.5843703168511, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 104.92524427234193, Y: 230.88568159947584, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 95.75090715475866, Y: 245.78808202534464, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 104.26244903693569, Y: 263.8865254608433, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 112.77399091911272, Y: 281.9849688963421, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 121.28553280128969, Y: 300.08341233184086, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 137.8138942621584, Y: 305.8334790635293, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 149.15538021274105, Y: 319.16092054465156, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 152.1873218038044, Y: 336.3962717214735, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 146.0749298727678, Y: 352.794096726071, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 154.5864811644084, Y: 370.89253573637706, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 167.51385374140668, Y: 382.68800258832806, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 168.35434490052833, Y: 400.16780735301114, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 176.8658327624463, Y: 418.2662761936734, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 185.37732062436427, Y: 436.3647450343356, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 202.45334746540678, Y: 440.1934925219609, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 216.10603895779028, Y: 451.1412783717936, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 223.55359257981596, Y: 466.9774377877332, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 223.27853293421165, Y: 484.4752760025345, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 215.33690476616084, Y: 500.0695230840842, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 223.84839661173, Y: 518.1679900512836, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 232.3598884572992, Y: 536.2664570184832, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 243.08111736852166, Y: 550.0977711510291, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 239.26548287627807, Y: 567.1767328706889, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'C', X: 239.26548287627807, Y: 587.1767328706889, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'U', X: 239.26548287627807, Y: 607.1767328706889, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'G', X: 239.26548287627807, Y: 627.1767328706889, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'A', X: 239.26548287627807, Y: 647.1767328706889, Width: 10.5, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '1', X: 190.01548287627807, Y: 667.1767328706889, Width: 9.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '10', X: 156.4334966642658, Y: 528.0962890872787, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '20', X: 85.08942600152702, Y: 377.3790609423176, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '30', X: -4.0, Y: 216.9242839665876, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '40', X: 14.012880260578264, Y: 45.007868448182535, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '50', X: 96.1742454892561, Y: 154.9464903862862, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '60', X: 227.52134602624125, Y: 99.34571977522603, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '70', X: 388.8336956238552, Y: 8.0, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '80', X: 450.1566172372382, Y: 90.0749741358519, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '90', X: 294.0308200161775, Y: 148.66853264697932, Width: 18.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '100', X: 113.98217106244178, Y: 227.1702136525655, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '110', X: 164.43492763232476, Y: 362.38100030215804, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '120', X: 233.69686357892945, Y: 509.65649820571446, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: '127', X: 231.01548287627807, Y: 667.1767328706889, Width: 27.0, Height: 8
Warning: Font Verdana not found. Using default font.
Text: 'ATP13A3, -28.9 ± 1.5
 kcal/mol, AUC: 0.61', X: 193.99806481929028, Y: 679.9767328706888, Width: 141.0, Height: 23
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Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/e60c67d0-00df-447c-be8e-e4c18444e38f/final_image/ATP13A3_fold_final_4.svg
